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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010240 ID=TCONS_00010240|Name=TCONS_00010240|organism=Clytia hemisphaerica|type=transcript|length=1762bp
TGCAGTGTTCGTTGACATTTATGACATTCTAATCTCATTTTGTCGTCATC
TTTTATGCAGTTTTGTTCTGTACATCgatttgcaacattttcgatttCAT
CTCTTGTTGAGATTCTGCTAGNTGAAAAAGGACCGCTCACGGATTTACCA
GGGTTAAGTTTAATCATTATTCGCTGGATATCTTCAGGGGTAACCTCACT
AAACGAAAATGATTTGTTCGTAGACTGAGATTCGAGGATGCGAAGGACGC
TAGGATGATTTTCGAGCGGATTATTTTCAGTGTTCCCAGGAAGACTAGAT
TCTGAAGTTCTTATGCCAAGATAAGAAGCgatatttacaaaataatcATT
AAAAGTTTGAGCTATAGTAGCCTCATCATCTATCAGCTCGTTTGATTCAC
TTGAATTGTCAAGCAAGAAGATTTTTTCGTGGTGTTGGACCTTGTTTGAA
AAGTATGGTTTTGCAGATTTCCAAAAGTTTTCTGTTGTCCCTAAATCACG
AAAATACTTTCTCTTTGCTTTCCTATTCAGatttacaatataattttttt
gtttacgatATAAGGTGCTTCCGGTCttatttgctttgtttttgtaaaaa
gagCGAATCATAATAGCTTTTCGGACAGCTTTAGTTATATGGGGCTTTTG
ATTTCCCCTTATGGTTCGCTTTTTCATTGGTGCATGggcatccaaaatat
tttcaaaggtgTTGCTGAAGTCTTCAAAATCTGAGAAATCGCAATCAAAT
TTACGACTTTCGACTTACGAAACaactttcatcaaaatttttaaaagatc
taTATTCTATAATTTTGGGAGGAGCTTTTTTAAAACTAGCTTTGAACATG
CTATAAATCAAGTGATGGTAGTCACTGATTCCTGTTTCAAAAGTCCCACT
GCTTTTAAAGCNctttcatcaaaatttttaaaagatctaTATTCTATAAT
TTTGGGAGGAGCTTTTTTAAAACTAGCTTTGAACATGCTATAAATCAAGT
GATGGTAGTCACTGATTCCTGTTTCAAAAGTCCCACTGTTTTTAAAGCAA
AGAGGCCGATTTGTAAGGATCAAATCAATGCATCTACCCTTCTTTGACTT
GAAGCATGTtggggtttttatcaagcttttcagAGAATATGAATCTAAAA
AGTTTGacatattattttcaaatatctCCTCATTAAAGtcaccaaaaatt
aaaaaattatcttaTGAGGCACCGTAATGATCAAGGACTTCACTTAACTC
CTCGAGAAAGGGTTTTAGTTTTTGTAGCCTTGGATTTCGATAAATAGAAA
GGATaagccattttgattttctgaaatttaATTCCAGTGTCAAGCATTGG
ATTCCTGGTGAGAGTAATTTATCGTTGAGCTGGCGAAGTGGAAGTTGTTT
TTTTGCATAGAGCAAAAGACCTCtgcttttctttgaaaaatcgaGTCCGA
TTggctttttaaatcctttgaCAAATAGTTTAGATTCGGGAAAAGAGGAG
TCAAGCTTTGTTTCTGCCATGCAAAAGATATTTATGTGAGgcaaaattag
attttttacaTCCTTTTGTTTGTTAGGCAAAGAATTAATATTAAGGTAGG
AAAACAAAATACCATTTTCCTTTTCCAAGTTTTCAAGAGGTTTTTCAGAA
ATAATCTTACCATCGAGGTGTGATCCGTTAAATTCAAGCGATTCCCGTCA
ACAATTTATCAAGTTTCGTAGATTACTTTCAAGTTTGTTTGTTCCATCTA
TGTTCAAGTGTA Run BLAST on NCBI protein sequence of TCONS_00010240-protein >TCONS_00010240-protein ID=TCONS_00010240-protein|Name=TCONS_00010240-protein|organism=Clytia hemisphaerica|type=polypeptide|length=225bp
MKKRTIRGNQKPHITKAVRKAIMIRSFYKNKANKTGSTLYRKQKNYIVNL
NRKAKRKYFRDLGTTENFWKSAKPYFSNKVQHHEKIFLLDNSSESNELID
DEATIAQTFNDYFVNIASYLGIRTSESSLPGNTENNPLENHPSVLRILES
QSTNKSFSFSEVTPEDIQRIMIKLNPGKSVSGPFSXSRISTRDEIENVAN
RCTEQNCIKDDDKMRLECHKCQRTL Run BLAST on NCBI transcript from alignment at sc0000103:618949..620710 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010240 ID=TCONS_00010240|Name=TCONS_00010240|organism=Clytia hemisphaerica|type=transcript|length=1762bp|location=Sequence derived from alignment at sc0000103:618949..620710 (Clytia hemisphaerica)
TACACTTGAACATAGATGGAACAAACAAACTTGAAAGTAATCTACGAAAC
TTGATAAATTGTTGACGGGAATCGCTTGAATTTAACGGATCACACCTCGA
TGGTAAGATTATTTCTGAAAAACCTCTTGAAAACTTGGAAAAGGAAAATG
GTATTTTGTTTTCCTACCTTAATATTAATTCTTTGCCTAACAAACAAAAG
GAtgtaaaaaatctaattttgcCTCACATAAATATCTTTTGCATGGCAGA
AACAAAGCTTGACTCCTCTTTTCCCGAATCTAAACTATTTGtcaaaggat
ttaaaaagccAATCGGACtcgatttttcaaagaaaagcaGAGGTCTTTTG
CTCTATGCAAAAAAACAACTTCCACTTCGCCAGCTCAACGATAAATTACT
CTCACCAGGAATCCAATGCTTGACACTGGAATtaaatttcagaaaatcaa
aatggcttATCCTTTCTATTTATCGAAATCCAAGGCTACAAAAACTAAAA
CCCTTTCTCGAGGAGTTAAGTGAAGTCCTTGATCATTACGGTGCCTCAta
agataattttttaatttttggtgaCTTTAATGAGGagatatttgaaaata
atatgtCAAACTTTTTAGATTCATATTCTctgaaaagcttgataaaaacc
ccaACATGCTTCAAGTCAAAGAAGGGTAGATGCATTGATTTGATCCTTAC
AAATCGGCCTCTTTGCTTTAAAAACAGTGGGACTTTTGAAACAGGAATCA
GTGACTACCATCACTTGATTTATAGCATGTTCAAAGCTAGTTTTAAAAAA
GCTCCTCCCAAAATTATAGAATAtagatcttttaaaaattttgatgaaag
NGCTTTAAAAGCAGTGGGACTTTTGAAACAGGAATCAGTGACTACCATCA
CTTGATTTATAGCATGTTCAAAGCTAGTTTTAAAAAAGCTCCTCCCAAAA
TTATAGAATAtagatcttttaaaaattttgatgaaagttGTTTCGTAAGT
CGAAAGTCGTAAATTTGATTGCGATTTCTCAGATTTTGAAGACTTCAGCA
AcacctttgaaaatattttggatgccCATGCACCAATGAAAAAGCGAACC
ATAAGGGGAAATCAAAAGCCCCATATAACTAAAGCTGTCCGAAAAGCTAT
TATGATTCGctctttttacaaaaacaaagcaaataaGACCGGAAGCACCT
TATatcgtaaacaaaaaaattatattgtaaatCTGAATAGGAAAGCAAAG
AGAAAGTATTTTCGTGATTTAGGGACAACAGAAAACTTTTGGAAATCTGC
AAAACCATACTTTTCAAACAAGGTCCAACACCACGAAAAAATCTTCTTGC
TTGACAATTCAAGTGAATCAAACGAGCTGATAGATGATGAGGCTACTATA
GCTCAAACTTTTAATgattattttgtaaatatcGCTTCTTATCTTGGCAT
AAGAACTTCAGAATCTAGTCTTCCTGGGAACACTGAAAATAATCCGCTCG
AAAATCATCCTAGCGTCCTTCGCATCCTCGAATCTCAGTCTACGAACAAA
TCATTTTCGTTTAGTGAGGTTACCCCTGAAGATATCCAGCGAATAATGAT
TAAACTTAACCCTGGTAAATCCGTGAGCGGTCCTTTTTCANCTAGCAGAA
TCTCAACAAGAGATGaaatcgaaaatgttgcaaatcGATGTACAGAACAA
AACTGCATAAAAGATGACGACAAAATGAGATTAGAATGTCATAAATGTCA
ACGAACACTGCA Coding sequence (CDS) from alignment at sc0000103:618949..620710 >TCONS_00010240 ID=TCONS_00010240|Name=TCONS_00010240|organism=Clytia hemisphaerica|type=CDS|length=675bp|location=Sequence derived from alignment at sc0000103:618949..620710 (Clytia hemisphaerica)
ATGAAAAAGCGAACCATAAGGGGAAATCAAAAGCCCCATATAACTAAAGC
TGTCCGAAAAGCTATTATGATTCGctctttttacaaaaacaaagcaaata
aGACCGGAAGCACCTTATatcgtaaacaaaaaaattatattgtaaatCTG
AATAGGAAAGCAAAGAGAAAGTATTTTCGTGATTTAGGGACAACAGAAAA
CTTTTGGAAATCTGCAAAACCATACTTTTCAAACAAGGTCCAACACCACG
AAAAAATCTTCTTGCTTGACAATTCAAGTGAATCAAACGAGCTGATAGAT
GATGAGGCTACTATAGCTCAAACTTTTAATgattattttgtaaatatcGC
TTCTTATCTTGGCATAAGAACTTCAGAATCTAGTCTTCCTGGGAACACTG
AAAATAATCCGCTCGAAAATCATCCTAGCGTCCTTCGCATCCTCGAATCT
CAGTCTACGAACAAATCATTTTCGTTTAGTGAGGTTACCCCTGAAGATAT
CCAGCGAATAATGATTAAACTTAACCCTGGTAAATCCGTGAGCGGTCCTT
TTTCANCTAGCAGAATCTCAACAAGAGATGaaatcgaaaatgttgcaaat
cGATGTACAGAACAAAACTGCATAAAAGATGACGACAAAATGAGATTAGA
ATGTCATAAATGTCAACGAACACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010240-exon-sc0000103-1491911889:618949..620710 | TCONS_00010240-exon-sc0000103-1491911889:618949..620710 | Clytia hemisphaerica | exon |
| TCONS_00010240-exon-sc0000103-1510915933:618949..620710 | TCONS_00010240-exon-sc0000103-1510915933:618949..620710 | Clytia hemisphaerica | exon |
| TCONS_00010240-exon-sc0000103-1575043694:618949..620710 | TCONS_00010240-exon-sc0000103-1575043694:618949..620710 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000103 | supercontig | sc0000103:618949..620710 . |
Blast
The following BLAST results are available for this feature:
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