TCONS_00010231 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010231
Unique NameTCONS_00010231
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length411

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010231 ID=TCONS_00010231|Name=TCONS_00010231|organism=Clytia hemisphaerica|type=transcript|length=411bp
AATCGCAATCAACTTCATCTACCGCTTACCGTGAAATTGAGCAAGTTAAA
GGCTACATTCAGCCAGATGATGAAATTATGGCGCATTTATACAATTGTTC
TATCATTGCCTCCAAAATTGTGCACACCGCAAAGTGCCTGATGTGTGATC
AGCACATTGTAGTTAAAGAACATTCAAAGAACACTGTCAAATGTCCAAGC
GTGGGTTGTGGTGCCACAACAATGATTTCCAAAAACGAGCAAAATTACTG
GCGTATCATAGTAAACAGCGGTTCAAATAACATTAAATTGGATATCAAGC
TACATCTTCTTCCAAATCTCAAAATTGATCAAATGCAGGTGTTTTTCTTA
AATCATAAGTTTGACATTGACTACTGTTCGGTTAGTGGTACTGTTGATAA
Gattgtcaaaa
Run BLAST on NCBI

protein sequence of TCONS_00010231-protein

>TCONS_00010231-protein ID=TCONS_00010231-protein|Name=TCONS_00010231-protein|organism=Clytia hemisphaerica|type=polypeptide|length=136bp
SQSTSSTAYREIEQVKGYIQPDDEIMAHLYNCSIIASKIVHTAKCLMCDQ
HIVVKEHSKNTVKCPSVGCGATTMISKNEQNYWRIIVNSGSNNIKLDIKL
HLLPNLKIDQMQVFFLNHKFDIDYCSVSGTVDKIVK
Run BLAST on NCBI

transcript from alignment at sc0000103:400860..401270

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010231 ID=TCONS_00010231|Name=TCONS_00010231|organism=Clytia hemisphaerica|type=transcript|length=411bp|location=Sequence derived from alignment at sc0000103:400860..401270 (Clytia hemisphaerica)
ttttgacaatCTTATCAACAGTACCACTAACCGAACAGTAGTCAATGTCA
AACTTATGATTTAAGAAAAACACCTGCATTTGATCAATTTTGAGATTTGG
AAGAAGATGTAGCTTGATATCCAATTTAATGTTATTTGAACCGCTGTTTA
CTATGATACGCCAGTAATTTTGCTCGTTTTTGGAAATCATTGTTGTGGCA
CCACAACCCACGCTTGGACATTTGACAGTGTTCTTTGAATGTTCTTTAAC
TACAATGTGCTGATCACACATCAGGCACTTTGCGGTGTGCACAATTTTGG
AGGCAATGATAGAACAATTGTATAAATGCGCCATAATTTCATCATCTGGC
TGAATGTAGCCTTTAACTTGCTCAATTTCACGGTAAGCGGTAGATGAAGT
TGATTGCGATT

Coding sequence (CDS) from alignment at sc0000103:400860..401270

>TCONS_00010231 ID=TCONS_00010231|Name=TCONS_00010231|organism=Clytia hemisphaerica|type=CDS|length=408bp|location=Sequence derived from alignment at sc0000103:400860..401270 (Clytia hemisphaerica)
tttgacaatCTTATCAACAGTACCACTAACCGAACAGTAGTCAATGTCAA
ACTTATGATTTAAGAAAAACACCTGCATTTGATCAATTTTGAGATTTGGA
AGAAGATGTAGCTTGATATCCAATTTAATGTTATTTGAACCGCTGTTTAC
TATGATACGCCAGTAATTTTGCTCGTTTTTGGAAATCATTGTTGTGGCAC
CACAACCCACGCTTGGACATTTGACAGTGTTCTTTGAATGTTCTTTAACT
ACAATGTGCTGATCACACATCAGGCACTTTGCGGTGTGCACAATTTTGGA
GGCAATGATAGAACAATTGTATAAATGCGCCATAATTTCATCATCTGGCT
GAATGTAGCCTTTAACTTGCTCAATTTCACGGTAAGCGGTAGATGAAGTT
GATTGCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005749XLOC_005749Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010231-proteinTCONS_00010231-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010231-exon-sc0000103-1491911889:400860..401270TCONS_00010231-exon-sc0000103-1491911889:400860..401270Clytia hemisphaericaexon
TCONS_00010231-exon-sc0000103-1510915933:400860..401270TCONS_00010231-exon-sc0000103-1510915933:400860..401270Clytia hemisphaericaexon
TCONS_00010231-exon-sc0000103-1575043694:400860..401270TCONS_00010231-exon-sc0000103-1575043694:400860..401270Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000103supercontigsc0000103:400860..401270 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.116808	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010231 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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