TCONS_00010228 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010228
Unique NameTCONS_00010228
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length439

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010228 ID=TCONS_00010228|Name=TCONS_00010228|organism=Clytia hemisphaerica|type=transcript|length=439bp
NNGGCGCAAGGGTACTGAAGAGGTGAAACAGTTCGTCAGTAAAGAGAAGT
ACAAACGCATATCAACAGAGATTGACGGCATCCTAACGTATACTGGTCGT
ATCATGCCAACAGACGAAATCAACGTGATCACTCCGATGACGAAAGTGAT
GAAAGATCTACATCAAACGACCTTCTGCGTTCCAATCATCAGCAAACATT
CACCCATCGCCTACGCCGTCCTGAGTGACGTTCACTGGTACAACAAAGTC
GTCAAACATTCCGGCATCGAAGCTACGTTACGCTATGCATCCCAGAAGGC
ATTCATCATTGAAGGACGCGAAGTTGAAAAGAAGGTCAAAGCATCTTGCA
AATTGTGTCGTTTCCTCGAAAAATCGAAAGTCAAAGTCAGCATGGGCAAA
ACACCAAGTTGTTGCAGAACGATTGCTCCTGCTTTCTAN
Run BLAST on NCBI

protein sequence of TCONS_00010228-protein

>TCONS_00010228-protein ID=TCONS_00010228-protein|Name=TCONS_00010228-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
XRKGTEEVKQFVSKEKYKRISTEIDGILTYTGRIMPTDEINVITPMTKVM
KDLHQTTFCVPIISKHSPIAYAVLSDVHWYNKVVKHSGIEATLRYASQKA
FIIEGREVEKKVKASCKLCRFLEKSKVKVSMGKTPSCCRTIAPAFX
Run BLAST on NCBI

transcript from alignment at sc0000103:385135..385573

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010228 ID=TCONS_00010228|Name=TCONS_00010228|organism=Clytia hemisphaerica|type=transcript|length=439bp|location=Sequence derived from alignment at sc0000103:385135..385573 (Clytia hemisphaerica)
NTAGAAAGCAGGAGCAATCGTTCTGCAACAACTTGGTGTTTTGCCCATGC
TGACTTTGACTTTCGATTTTTCGAGGAAACGACACAATTTGCAAGATGCT
TTGACCTTCTTTTCAACTTCGCGTCCTTCAATGATGAATGCCTTCTGGGA
TGCATAGCGTAACGTAGCTTCGATGCCGGAATGTTTGACGACTTTGTTGT
ACCAGTGAACGTCACTCAGGACGGCGTAGGCGATGGGTGAATGTTTGCTG
ATGATTGGAACGCAGAAGGTCGTTTGATGTAGATCTTTCATCACTTTCGT
CATCGGAGTGATCACGTTGATTTCGTCTGTTGGCATGATACGACCAGTAT
ACGTTAGGATGCCGTCAATCTCTGTTGATATGCGTTTGTACTTCTCTTTA
CTGACGAACTGTTTCACCTCTTCAGTACCCTTGCGCCNN

Coding sequence (CDS) from alignment at sc0000103:385135..385573

>TCONS_00010228 ID=TCONS_00010228|Name=TCONS_00010228|organism=Clytia hemisphaerica|type=CDS|length=438bp|location=Sequence derived from alignment at sc0000103:385135..385573 (Clytia hemisphaerica)
NTAGAAAGCAGGAGCAATCGTTCTGCAACAACTTGGTGTTTTGCCCATGC
TGACTTTGACTTTCGATTTTTCGAGGAAACGACACAATTTGCAAGATGCT
TTGACCTTCTTTTCAACTTCGCGTCCTTCAATGATGAATGCCTTCTGGGA
TGCATAGCGTAACGTAGCTTCGATGCCGGAATGTTTGACGACTTTGTTGT
ACCAGTGAACGTCACTCAGGACGGCGTAGGCGATGGGTGAATGTTTGCTG
ATGATTGGAACGCAGAAGGTCGTTTGATGTAGATCTTTCATCACTTTCGT
CATCGGAGTGATCACGTTGATTTCGTCTGTTGGCATGATACGACCAGTAT
ACGTTAGGATGCCGTCAATCTCTGTTGATATGCGTTTGTACTTCTCTTTA
CTGACGAACTGTTTCACCTCTTCAGTACCCTTGCGCCN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005746XLOC_005746Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010228-exon-sc0000103-1491911889:385135..385573TCONS_00010228-exon-sc0000103-1491911889:385135..385573Clytia hemisphaericaexon
TCONS_00010228-exon-sc0000103-1510915933:385135..385573TCONS_00010228-exon-sc0000103-1510915933:385135..385573Clytia hemisphaericaexon
TCONS_00010228-exon-sc0000103-1575043694:385135..385573TCONS_00010228-exon-sc0000103-1575043694:385135..385573Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010228-proteinTCONS_00010228-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000103supercontigsc0000103:385135..385573 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.89146	2.38197	1.06652	0.460915	2.17104	1.47529	1.19419	0.479914	0.572022	1.2515	0.500661	1.04887	1.13573	1.0603	0.219917	0.210651	0	0.498533	0.397719	0.808765	0.597938	0.654702	0.232801	1.48589	0.966827	1.00847	0	0	0.670114	0.636624
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010228 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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