|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010204 ID=TCONS_00010204|Name=TCONS_00010204|organism=Clytia hemisphaerica|type=transcript|length=292bp
AAAGCAGGTGAAGAAGCACTGAGACCATGCCTCATCATGATAGAAGAAGG
AATGTCGCAATTCAGAAATATTTCAATGAGGGATATAGctataaaaacat
tttacggTTGCTGCAAAGACTTGGTATTGTGATCAgCATGCGAAAGTTGA
AAAGAATCTTATTCAGCCTCGGGCTTGCAAGAAGAAAACCAAATTGTTCA
CTGGCCCATGTGTGTGATACCCTTATGACTGAAATTCAAGGAAGTGGAAG
CTTGCTAGGATATAGATGTATGCATCAGAAATTGCGTgtaat Run BLAST on NCBI transcript from alignment at sc0000103:275216..279981- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010204 ID=TCONS_00010204|Name=TCONS_00010204|organism=Clytia hemisphaerica|type=transcript|length=4766bp|location=Sequence derived from alignment at sc0000103:275216..279981- (Clytia hemisphaerica)
AAAGCAGGTGAAGAAGCACTGAGACCATGCCTCATCATGATAGAAGAAGT
AAGTATTTCTTTCCAATCATTAATATTCACAACATATTAGATAATACAAC
ACCTTTTAAAGAATCCTGAACAATTAATGCGTCTTTTGTACAGAAGGGAA
GGGGTACTATGTCCAGCGTCCAGGGTGGTTGCACTCATGACAGCGTGGTG
ATCAATGAATGGGCAGATGGGAAAGGGTGATTGATAAAAAATTGTTAGGT
AANGGTGGTTGCACTTATGACAGCTTGGTGATCAATGAATGAGCAGATGG
GAAAGGGTGATCGATAAAAAATTGTTAGGTAATTCAGTCAAGAGTATGGA
TTACCTATCAATTCTGTATTTTTGCGGAACAACCGTTTTGAGGGCGCGAA
GCGCCCGAATAGGGAGTGTAGCATCCTTTCTCTAGATCTGCGCGTGGCGT
AAAAAAATCTGTATATGTACGAACATTTCTGAAAATGAGCCGGTAGGATG
GCGAAATATCGAATTTGCTTTGTGTTGGATGGGATCAAAATTAGTTTAGC
ACTATTAGAAGTATTTGTTTCGTAAAATACTTATTTTAATAGAATATNNN
NNNNNNNNNNNNNNNNNNNNNNATGAGCCGGTGGGATGGCGAAATATCGA
CTTTGCTTCGTGTTGGATGGGGTTAAAATTAGTTTAGCACTATTTGAAGT
ATTTGTTTCATAAATTACTTATTTTGATAGAATATAATCTATGTTTTGAG
TATTATAATTTAAGATCTTTTATGAAAATTGCAACTTTTGTACAAATAAT
AGTAATAGTACCAAAACTTTATCTCCTTTGCTTTTTTCCCACTTCTTCCA
GATGTCTGGGCCCAGTCTTTTTTTCTGCGTTTCATTTTCAAAACATCAAA
GATGGCCCTGAAAACCAACGAATCTCTTCGGTTTTTGAGGTGCATGCATT
AACTTTTGGACTGATTATGGCCCATTGAAAGGTAAATCTTCATTTTGTAT
TAAATTGGATTTCATCTCACAAAACAAAATGTTTTTTTCTTGGCCATGTG
TTTCATGCATGGATATCATATGGCCATGTTTTCTTCCCACAGGCTTATTT
TAATTCATATGGGTCGTGTGTTTATTTCATTTTACTCTAACTATAATTAT
TTTCATCTCTTCTGTTTTCAGGGTTCAGGTGAAGGAGCTTGATTGATGTG
ATGGGTGACTTTTAACTACCGATCGGCCGACTGGCTNCTATTCCGTGCAA
TGTTTACGAGACAAAAGAGAAGACTGTACTGGAAAGCAGAATCAAAATGA
TAATTAGTAGTTGCTATTTTCGCCATTGAAGATTTCTTTAATATTTATTC
GATAATGGAATCATTTTGATTTGGCTTGATTGATTGTTGATTCCATTATC
GCTTGCTGACTCTCGAGAGATTTTTGTTTAACATTGGAGCNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNTATGTTACTTTTGATGCTAGCTCGAAT
ATATTTTCAAACAAAATATCTTTCACAAAAAAGTGTTTTTTACTGGCGAA
TCAACTTATATTTTCATAAACTCTTTGACGTGAGATTGTAGATAACGCTT
GTTATTATTACCGCCTAATAAATAGTAATGTCATGACTTTAATATACTTA
TATGAATTAGAAGTTTTTGAATTTTATTCTGCAAGGCAAGGTTCTTGAAA
AAATTAGTTTGGGCTGGTTTGGATTGATTTTATAAATGAAACATTGGAAA
CATCTTTTTGCCGAACACACAATATCCCAAAAATAGACTCACAAATAGAC
AAAATTTCCTCATGCAAAAAATCTCACTAGTCTTGATAAGTTACTGGAAA
TTATTGCTAGGCTGCTGATTCCTTTTCGGAAAATTGATACTACATTTGAA
GTGAANATCGATTACTCATTATTAATTTTACTTTGATCCTTAGTAAAGTA
CTACATTTTCAATCAATTATTCATTGGTATAGGCGAGGCAGCCATTGAAA
AATTGTTCTGTTCACGTCTCCCGCCCGCACCATCCATATTTTTCACTGAT
TTTCCAGTGCGGAGATTCAAAAAAAATCCAGGAAAAATCCAGAAGAAACA
ACTTGTTCTTCAAATGTATAACTTTTTCTTTGGGGAAGGAGGGTTTCAGG
CGATATTTAAAAAACCCGTAAAATTTTATATAATTCAATATTTGAGACCT
TCTGGCGATGCGAACATAACTATTTTTCGATGGCCGCCATATATGTATAA
TAAATACATGTCATCTGATAATAAATCAATGATGCTGATGGATAATCAAA
GNTTATAGAGAGCTAAGTAATTGTTTCAAAAAGTCACAAAAAGATGGGAT
AAAAGTCTTCCAATTTATTCAGATAAACTACCAGCCTAAAGCCTAATGTA
ATATCTTTGTTGTTGGTCATTCAGCCATTGCACAAGAAACATGTGTGTTC
TTTTTTGTCACTTGCANTCAATCCAAAATAGCTTCCTCATAACATTATAA
AAATAAATAGAACTGTTGACTCATAACGAAGGAGCTGACTTTAAAAATCA
AGGTATTTCCCTCGTCTAGACAATTTTTGGATGGAGTATATATAAATAAT
AGATTACAGAGCTCTAAGTATATACAGGCAGTTTATAAAAGTACATCGAT
TTTTGCATAAAAAAAACTTCTACTCGTCAGATACGGAACAAAAGAAAGTG
ATAAAAAAAACAAAAGAAACACCGATGAACCCAATTTCTGGCGTATCTTT
TACGAAAAATTTGATCCGTGTTAGCAATCGAACGATATTTGATATTTTCT
TTTTAACCCATCGATGCGAAGAACAGAAAAGAAGAACTTTAGTTTTTGCC
CATCTGCTATAGAGTGTGACAAAATTCCTTATATAAAATTGTGTTGTCAT
GCTTGGAGATTGAAAAAGATTCAGGTCATAATGACAAGAGATAGCAAGAG
ATGCGAAAGATTAGGTAATTAGTAAATGTCTTAAAATTACAAATGCAGTC
GCATATATTTTTAGCATCTGTATTCTCAAGTGTATTTGGAAAAACAGTTT
TACGAGTGTGAGAGCTTGAGGAGTGTTTAATAACTTTTTCTCACTCGTTT
GGTTGCCGTAGTGAATAATAACAGTTTTGTAAGCTTTTATTTTGATGCTA
AAATCGATGTACTTTTATAAACTGACAGGATAAAACACTGGATAACATTG
TCAAATAAAAATGGGGGAGGGTAATTGGTGGTTTTTTTAGTTTCAGTGGG
GGCTTATACAGGCTTTTGCACCTCACCAGTATAATGAATGGCAGTATCTT
TGTCGGGACAACATGAAGCACACTATTTTTTTTAGTTTTCAGTTTTTTTT
TAGTTTTTTAAGTTGTCAGATTTCCGTTGTAAAGTTCCCTAAAAAATAAT
GGAATTCCGATATACTTTGGCAACAAAACTGGGTGAAATTTATGGAATTC
CCATACTTTTACCTCCATTATACTAACAGTTGGACCTATCTCCTTTTTAC
AACTGTCATTTCTTTTTCTCCTAGGGAATGTCGCAATTCAGAAATATTTC
AATGAGGGATATAGCTATAAAAACATTTTACGGTTGCTGCAAAGACTTGG
TATTGTGATCAGGTATATAAAAATATATACATTAAAGGTCAAGGTCATTG
TTATTATAGAGTACTATAACCAGACTATATAATTTTAAGTAATTAATTTC
AATTACCAGATTAAATTCTAATTAAGGAAAAATTACATCATCAAATTTGA
TATTTAGATAAATTTTAATCCCTTGATCTCCTTTTTTCTTCTTATTACGA
ATTTGGGAAAAAAGGTCTTAAATCAAGCAATCATTGCTGTTATTCTATTG
TGATAAGCTAATTGATTATATACATATAATTGGCTGACATGCTATGGTTT
TTTTTAGCATGCGAAAGTTGAAAAGAATCTTATTCAGCCTCGGGCTTGCA
AGAAGAAAACCAAATTGTTCACTGGCCCATGTGTGTGATACCCTTATGGT
ATGTTAATTTTGCAAGGTTTTTTAAATTAACCATTTTTTATTATATTACT
TCCGAACTTAAGCTTCATATTCAGTTATTTTCTTGCTACATAATATTATT
TATTTTATTGAAGGGTGTTTTTTTACATGGGGCTGGAATTGTTGGTTTGC
CGTCACCCGACCCTAGATTCTTGAGGTGGGTGGGTCAGTCGAAAAAAAAA
TTATTATTTTGAGGATTTATGAAATCTTTATCCGCACAGCTTTACATCTA
GGTAATTTTGAATGGAAAACGGAAGAGCGCTAGCAGGGAATTCACGATTC
TTATGCTTGAGACAGACAAGATATGAGTTCTTCTTAAAAATGGCAATAAA
ATATTTTGGGTTGGAAGTCCTGCCTGGTTGGTTGTCAATCTATAAAGCAA
TTAACCCCATTCACCATATTTTTCTACCAATGAATTTTAAATTCTTCTAA
ATTTTCAATCAATAATCTATTTTCTACATAATATTACCCTGTTCTTTCTA
GACTGAAATTCAAGGAAGTGGAAGCTTGCTAGGATATAGATGTATGCATC
AGAAATTGCGTGTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010204-exon-sc0000103-1575043694:279934..279981 | TCONS_00010204-exon-sc0000103-1575043694:279934..279981 | Clytia hemisphaerica | exon |
| TCONS_00010204-exon-sc0000103-1575043694:276170..276257 | TCONS_00010204-exon-sc0000103-1575043694:276170..276257 | Clytia hemisphaerica | exon |
| TCONS_00010204-exon-sc0000103-1575043694:275784..275874 | TCONS_00010204-exon-sc0000103-1575043694:275784..275874 | Clytia hemisphaerica | exon |
| TCONS_00010204-exon-sc0000103-1575043694:275216..275280 | TCONS_00010204-exon-sc0000103-1575043694:275216..275280 | Clytia hemisphaerica | exon |
| TCONS_00010204-exon-sc0000103-1510915933:279934..279981 | TCONS_00010204-exon-sc0000103-1510915933:279934..279981 | Clytia hemisphaerica | exon |
| TCONS_00010204-exon-sc0000103-1510915933:276170..276257 | TCONS_00010204-exon-sc0000103-1510915933:276170..276257 | Clytia hemisphaerica | exon |
| TCONS_00010204-exon-sc0000103-1510915933:275784..275874 | TCONS_00010204-exon-sc0000103-1510915933:275784..275874 | Clytia hemisphaerica | exon |
| TCONS_00010204-exon-sc0000103-1510915933:275216..275280 | TCONS_00010204-exon-sc0000103-1510915933:275216..275280 | Clytia hemisphaerica | exon |
| TCONS_00010204-exon-sc0000103-1491911889:279934..279981 | TCONS_00010204-exon-sc0000103-1491911889:279934..279981 | Clytia hemisphaerica | exon |
| TCONS_00010204-exon-sc0000103-1491911889:276170..276257 | TCONS_00010204-exon-sc0000103-1491911889:276170..276257 | Clytia hemisphaerica | exon |
| TCONS_00010204-exon-sc0000103-1491911889:275784..275874 | TCONS_00010204-exon-sc0000103-1491911889:275784..275874 | Clytia hemisphaerica | exon |
| TCONS_00010204-exon-sc0000103-1491911889:275216..275280 | TCONS_00010204-exon-sc0000103-1491911889:275216..275280 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000103 | supercontig | sc0000103:275216..279981 - |
Blast
The following BLAST results are available for this feature:
|
