TCONS_00010202 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010202
Unique NameTCONS_00010202
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1175

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010202 ID=TCONS_00010202|Name=TCONS_00010202|organism=Clytia hemisphaerica|type=transcript|length=1175bp
CAAAAAAATGCGAGCGTGTTTATTGGTCAAGAGCATTGACATAAATGCAA
TATTTCATATTTATGCTGTTGCATTAAGAAGAACTCTGCGATACACACAC
CAACACTTTCTACTCATAGCAGTGGTCTGATCGGATACATTTTTTCCGGA
CACGCTGTAGAGAATAATTGACTTTCCAATTTAGAGAATTGAAGCATTTT
GGTCTCAATTGAAGCGGTCACTGACTCAATGGTGGATGAACTTTTTTAAG
GACATGATTGACGATGGAACATTTGATGAATCTGATGAAATTCAAAGgga
atgtttaaaattttgttttctccaACTGATTCAAAAAGAGTTAGATGATT
TCAAACTAATACACAACACTCACAGGATTAGAAGAAGTAACACAAACGAA
ACAACTGGTGGAAAGCCGGAACTTTTGTACAGCATGCCAAATTATTTCGG
TGCCACCGACTTTATGTGGAATGTTCGTGAAGCTGAAATAAATGTTGCTG
AAGCGTATTGTCGTACACCGAACGTTTTTGGTTGTGGAAACGAAATTGAA
ACTGTTGGCTTATATTTTATGAATGAAAATAACTTGAGATTTCCAAGCTC
ATTTCAAGAAGCCAAAAGACTTTATGGCCTTCTGCTCCGATTCATTAATG
GTTTGGAAAACGCATATCATTTTTAACATTGTCCAATCTGAAGTTCAATT
agaaactttttaaactttttaaaatatatatttttattgaaCTTTTTCTC
CTCCTAAGAAATTTTATTATGCATGTCTTGTTACTACTGtataaaaatat
agaaattatCTAGAAATTTCAATACTTTTTCATAATGATATTTTCATGTA
GAAAAGGTTATGGCGTGACGGCCTCTTTAAGCTCGTACAAAAAGATCATA
TAATTTTCCCCTagttttttgatgtaaaaataaacttcaaagattttttc
tccGTATTCTGGAAACTGTCTTTTCTATCATAATATTAATTTCTATGTTT
TAGGCTTGCTAGTTTACTATTGTGTTTATATGAATATTTGCTGTTCTATA
AATCTTTCCAGGTATTCGaaagtgtttattttttatggtattaaattttg
taattttagccaagaaaaatcttttgttttaaagaccTTCATTTCACAGA
AAATCTATATTCATTATATGCATAG
Run BLAST on NCBI

protein sequence of TCONS_00010202-protein

>TCONS_00010202-protein ID=TCONS_00010202-protein|Name=TCONS_00010202-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
MNFFKDMIDDGTFDESDEIQRECLKFCFLQLIQKELDDFKLIHNTHRIRR
SNTNETTGGKPELLYSMPNYFGATDFMWNVREAEINVAEAYCRTPNVFGC
GNEIETVGLYFMNENNLRFPSSFQEAKRLYGLLLRFINGLENAYHF
Run BLAST on NCBI

transcript from alignment at sc0000103:270003..272161-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010202 ID=TCONS_00010202|Name=TCONS_00010202|organism=Clytia hemisphaerica|type=transcript|length=2159bp|location=Sequence derived from alignment at sc0000103:270003..272161- (Clytia hemisphaerica)
CAAAAAAATGCGAGCGTGTTTATTGGTCAAGAGCATTGACATAAATGCAA
TATTTCATATTTATGCTGTTGCATTAAGAAGAACTCTGCGATACACACAC
CAACACTTTCTACTCATAGCAGTGGTCTGATCGGATACATTTTTTCCGGA
CACGCTGTAGAGAATAATTGACTTTCCAATTTAGAGAATTGAAGCATTTT
GGTCTCAATTGAAGCGGTCACTGACTCAATGGTGGATGAACTTTTTTAAG
GTAATTTATTCCCTCATTGTTTCCCAACAACCCAGATAATTTTGGCTGAA
ATCTTTTGTAATTTATTCTTGCATTAGTACCTGGTAGAGTTTCTTCTGAC
TTTAAATCCTGAAATTGACAGAATTGCTTTTTGTGGGGATAATTTTTTTA
AGAGATACCAAAATCGAGCCAGTTCGATGAACAAGGTTGACAGTTTTGAC
CAATCATACTGCAGCTGTTTTTTATTACATGTATATGAATTTTCCAGGAC
ATGATTGACGATGGAACATTTGATGAATCTGATGAAATTCAAAGGTACGC
GAGAATATAAATTATTGTCAATAGAAAAACAATAGAAAATGGATTCAATT
TAATGGATTTAATTTTTGAAAAATGAAAGCTCTGCTCGCCCTCTCTCTGA
ATGAATTGAATGAATTCTAACCGGTGAAGAGTTTTGACCTAAATTCAATG
GACTTTGATTTCTGACCAAAAATTATGACCAGACCAGCAATAGCGAGTGG
CCACGGATTTGAAAAGTGAAATTAAAATGTAACATTTAAAAGAAAATGAG
ATCCAGATAAACTGAATTGACCCCCACGCGAACTTTTTTAAATCATTTTC
AAGTCTTTTGAATTGTTATAATTCTAAAAATGTTTGCATTTAAAAGAGCA
ATTTTACACAAATAACGATTTTAAAAATATAAATTACATTCCGCCAATAG
TACTTGTTATCTACCGTAACGCTCTCCTGTTCTCCTTTTAAGTAAAATTA
ATGGTACAATTATTTATTTTTAGGGAATGTTTAAAATTTTGTTTTCTCCA
ACTGATTCAAAAAGAGTTAGATGATTTCAAACTAATACACAACACTCACA
GGATTAGAAGAAGTAACACAAACGAAACAACTGGTGGAAAGCCGGAACTT
TTGTACAGCATGCCAAATTATTTCGGTAAGCTGTAACATTTGGTTACATT
CGGTACTTAAGTCCATCGAAAAACTATGTGGAAACTTCACATTTAATGTT
GTAGCTCCTTCAAGTGGGTCTAATTGCCTATTTTTTGGCCATTTAGGCCT
ACTTTGTAGCGCTGTAATTTATCACTTGCAAAACATAAACAGGTAGAAAA
CGGAGGTGCACACTATGGCAGGAATACCTTACGAGTTTTAAAAGCTCTAT
GTTATAATCTATGATTGGCTATTCGCAATTCAGGTGCCACCGACTTTATG
TGGAATGTTCGTGAAGCTGAAATAAATGTTGCTGAAGCGTATTGTCGTAC
ACCGAACGTTTTTGGTTGTGGAAACGAAATTGAAACTGTTGGCTTATATT
TTATGAATGAAAATAACTTGAGATTTCCAAGCTCATTTCAAGAAGCCAAA
AGACTTTATGGCCTTCTGCTCCGATTCATTAATGGTTTGGAAAACGCATA
TCATTTTTAACATTGTCCAATCTGAAGTTCAATTAGAAACTTTTTAAACT
TTTTAAAATATATATTTTTATTGAACTTTTTCTCCTCCTAAGAAATTTTA
TTATGCATGTCTTGTTACTACTGTATAAAAATATAGAAATTATCTAGAAA
TTTCAATACTTTTTCATAATGATATTTTCATGTAGAAAAGGTTATGGCGT
GACGGCCTCTTTAAGCTCGTACAAAAAGATCATATAATTTTCCCCTAGTT
TTTTGATGTAAAAATAAACTTCAAAGATTTTTTCTCCGTATTCTGGAAAC
TGTCTTTTCTATCATAATATTAATTTCTATGTTTTAGGCTTGCTAGTTTA
CTATTGTGTTTATATGAATATTTGCTGTTCTATAAATCTTTCCAGGTATT
CGAAAGTGTTTATTTTTTATGGTATTAAATTTTGTAATTTTAGCCAAGAA
AAATCTTTTGTTTTAAAGACCTTCATTTCACAGAAAATCTATATTCATTA
TATGCATAG

Coding sequence (CDS) from alignment at sc0000103:270003..272161-

>TCONS_00010202 ID=TCONS_00010202|Name=TCONS_00010202|organism=Clytia hemisphaerica|type=CDS|length=1764bp|location=Sequence derived from alignment at sc0000103:270003..272161- (Clytia hemisphaerica)
GTGCCACCGACTTTATGTGGAATGTTCGTGAAGCTGAAATAAATGTTGCT
GAAGCGTATTGTCGTACACCGAACGTTTTTGGTTGTGGAAACGAAATTGA
AACTGTTGGCTTATATTTTATGAATGAAAATAACTTGAGATTTCCAAGCT
CATTTCAAGAAGCCAAAAGACTTTATGGCCTTCTGCTCCGATTCATTAAT
GGTTTGGAAAACGCATATCATTTTTAAGGAATGTTTAAAATTTTGTTTTC
TCCAACTGATTCAAAAAGAGTTAGATGATTTCAAACTAATACACAACACT
CACAGGATTAGAAGAAGTAACACAAACGAAACAACTGGTGGAAAGCCGGA
ACTTTTGTACAGCATGCCAAATTATTTCGGACATGATTGACGATGGAACA
TTTGATGAATCTGATGAAATTCAAAGATGAACTTTTTTAAGGTGCCACCG
ACTTTATGTGGAATGTTCGTGAAGCTGAAATAAATGTTGCTGAAGCGTAT
TGTCGTACACCGAACGTTTTTGGTTGTGGAAACGAAATTGAAACTGTTGG
CTTATATTTTATGAATGAAAATAACTTGAGATTTCCAAGCTCATTTCAAG
AAGCCAAAAGACTTTATGGCCTTCTGCTCCGATTCATTAATGGTTTGGAA
AACGCATATCATTTTTAAGGAATGTTTAAAATTTTGTTTTCTCCAACTGA
TTCAAAAAGAGTTAGATGATTTCAAACTAATACACAACACTCACAGGATT
AGAAGAAGTAACACAAACGAAACAACTGGTGGAAAGCCGGAACTTTTGTA
CAGCATGCCAAATTATTTCGGACATGATTGACGATGGAACATTTGATGAA
TCTGATGAAATTCAAAGATGAACTTTTTTAAGGTGCCACCGACTTTATGT
GGAATGTTCGTGAAGCTGAAATAAATGTTGCTGAAGCGTATTGTCGTACA
CCGAACGTTTTTGGTTGTGGAAACGAAATTGAAACTGTTGGCTTATATTT
TATGAATGAAAATAACTTGAGATTTCCAAGCTCATTTCAAGAAGCCAAAA
GACTTTATGGCCTTCTGCTCCGATTCATTAATGGTTTGGAAAACGCATAT
CATTTTTAAGGAATGTTTAAAATTTTGTTTTCTCCAACTGATTCAAAAAG
AGTTAGATGATTTCAAACTAATACACAACACTCACAGGATTAGAAGAAGT
AACACAAACGAAACAACTGGTGGAAAGCCGGAACTTTTGTACAGCATGCC
AAATTATTTCGGACATGATTGACGATGGAACATTTGATGAATCTGATGAA
ATTCAAAGATGAACTTTTTTAAGGTGCCACCGACTTTATGTGGAATGTTC
GTGAAGCTGAAATAAATGTTGCTGAAGCGTATTGTCGTACACCGAACGTT
TTTGGTTGTGGAAACGAAATTGAAACTGTTGGCTTATATTTTATGAATGA
AAATAACTTGAGATTTCCAAGCTCATTTCAAGAAGCCAAAAGACTTTATG
GCCTTCTGCTCCGATTCATTAATGGTTTGGAAAACGCATATCATTTTTAA
GGAATGTTTAAAATTTTGTTTTCTCCAACTGATTCAAAAAGAGTTAGATG
ATTTCAAACTAATACACAACACTCACAGGATTAGAAGAAGTAACACAAAC
GAAACAACTGGTGGAAAGCCGGAACTTTTGTACAGCATGCCAAATTATTT
CGGACATGATTGACGATGGAACATTTGATGAATCTGATGAAATTCAAAGA
TGAACTTTTTTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005724XLOC_005724Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010202-exon-sc0000103-1575043694:271912..272161TCONS_00010202-exon-sc0000103-1575043694:271912..272161Clytia hemisphaericaexon
TCONS_00010202-exon-sc0000103-1575043694:271618..271664TCONS_00010202-exon-sc0000103-1575043694:271618..271664Clytia hemisphaericaexon
TCONS_00010202-exon-sc0000103-1575043694:270987..271138TCONS_00010202-exon-sc0000103-1575043694:270987..271138Clytia hemisphaericaexon
TCONS_00010202-exon-sc0000103-1575043694:270003..270728TCONS_00010202-exon-sc0000103-1575043694:270003..270728Clytia hemisphaericaexon
TCONS_00010202-exon-sc0000103-1510915933:271912..272161TCONS_00010202-exon-sc0000103-1510915933:271912..272161Clytia hemisphaericaexon
TCONS_00010202-exon-sc0000103-1510915933:271618..271664TCONS_00010202-exon-sc0000103-1510915933:271618..271664Clytia hemisphaericaexon
TCONS_00010202-exon-sc0000103-1510915933:270987..271138TCONS_00010202-exon-sc0000103-1510915933:270987..271138Clytia hemisphaericaexon
TCONS_00010202-exon-sc0000103-1510915933:270003..270728TCONS_00010202-exon-sc0000103-1510915933:270003..270728Clytia hemisphaericaexon
TCONS_00010202-exon-sc0000103-1491911889:271912..272161TCONS_00010202-exon-sc0000103-1491911889:271912..272161Clytia hemisphaericaexon
TCONS_00010202-exon-sc0000103-1491911889:271618..271664TCONS_00010202-exon-sc0000103-1491911889:271618..271664Clytia hemisphaericaexon
TCONS_00010202-exon-sc0000103-1491911889:270987..271138TCONS_00010202-exon-sc0000103-1491911889:270987..271138Clytia hemisphaericaexon
TCONS_00010202-exon-sc0000103-1491911889:270003..270728TCONS_00010202-exon-sc0000103-1491911889:270003..270728Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010202-proteinTCONS_00010202-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000103supercontigsc0000103:270003..272161 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.97514	2.27147	0.404003	0.882291	19.169	11.9201	17.4502	14.9264	10.9912	8.24694	10.2299	6.40144	4.98465	6.06711	4.82628	5.29488	5.60476	5.10407	8.17472	9.69403	7.22128	7.71409	4.73887	6.31806	1.49319	2.78331	5.24908	3.72136	5.4334	4.03048
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010202 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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