TCONS_00010125 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010125
Unique NameTCONS_00010125
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1113

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010125 ID=TCONS_00010125|Name=TCONS_00010125|organism=Clytia hemisphaerica|type=transcript|length=1113bp
TAAAAATAAAACCATAGAGATAAAGAATTCCTGATCAACATGAAGGGATG
TGTATGACTcttttttggtataaaaatttgtatcaagatacatcaaaaca
tgaactgtaaaattgaataaaaaatataacaaatctaTTTTAAGTTTTGT
ATGTTTGCCATTTCTCGTTCCGTAGACTTTTGTATGTCATAGTATCAACA
TAGAGGTTTCCCTGCAAATGGTCCATCTCGTGTTGTATAATTCTTGCAGT
CCATCCACTTGCATGTAAGTCAATGTGCTGTCCATCAGGGTTTAACCCTT
CCACTTTAATCTCTTGATGCCGTGGTACTAAGGCTGAATAGTTTTCAATA
CTTAAACAACTCTCACGTAATATTGTTGTCCTTGAATCAAGTATTTTCAT
TTTCGGATTCACAAGAACCGTCAAAGGACATAAAGTCATTTGCATTTTAG
AAATACCTTTACTACCATATTTATCCATAGCTAATTTAATATCGTGTCCT
GTCACCTCAAATGCTATAATTTGTAATGAAATGCCAATTTGAGGAGCACA
GATTCCAGCTCCGTTAGATTTTCGCATCATAGAAACTAGTTCATCAACAA
TGTATTTGAACTCTGGGGTAACAAACGCTGCCTGTTCAACTGGTTTTGCA
AGTTCCCGTAAAACAGGATCACCTATTTGTCTGATCTTTACTTCTTTCTT
GCCTTGAAGAAAGTTCATAACCGATACAGCCCAGTTGGATGATTTACGAG
TAGCATCTCTTCGATGCATTTTCACTACCTTAGTCAGGAGCATTCTGATT
Gtttaatatataatatatttaccaactatattttgaaattcattaaagct
ttttaagtaTTAAAATAGGTTACTGATATATAcataaatttaaagaaaaa
attatatcaGAAACTTATGCTGAATTCACAAAGTTTTATATCCAAACCCA
TTATAATTAACAAAATCAtgtctgaaataaaaaatttccgagctaatttt
gttatttagcgaagaataaaaaaatacaataatgGGGTATATACACCTTG
TTAAATCAATTATTAAaactacatattttttttataagcattgcacttgt
aagcatatctagg
Run BLAST on NCBI

protein sequence of TCONS_00010125-protein

>TCONS_00010125-protein ID=TCONS_00010125-protein|Name=TCONS_00010125-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
MLLTKVVKMHRRDATRKSSNWAVSVMNFLQGKKEVKIRQIGDPVLRELAK
PVEQAAFVTPEFKYIVDELVSMMRKSNGAGICAPQIGISLQIIAFEVTGH
DIKLAMDKYGSKGISKMQMTLCPLTVLVNPKMKILDSRTTILRESCLSIE
NYSALVPRHQEIKVEGLNPDGQHIDLHASGWTARIIQHEMDHLQGNLYVD
TMTYKSLRNEKWQTYKT
Run BLAST on NCBI

transcript from alignment at sc0000102:128256..129368

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010125 ID=TCONS_00010125|Name=TCONS_00010125|organism=Clytia hemisphaerica|type=transcript|length=1113bp|location=Sequence derived from alignment at sc0000102:128256..129368 (Clytia hemisphaerica)
cctagatatgcttacaagtgcaatgcttataaaaaaaatatgtagttTTA
ATAATTGATTTAACAAGGTGTATATACCCcattattgtatttttttattc
ttcgctaaataacaaaattagctcggaaattttttatttcagacaTGATT
TTGTTAATTATAATGGGTTTGGATATAAAACTTTGTGAATTCAGCATAAG
TTTCtgatataattttttctttaaatttatgTATATATCAGTAACCTATT
TTAAtacttaaaaagctttaatgaatttcaaaatatagttggtaaatata
ttatatattaaaCAATCAGAATGCTCCTGACTAAGGTAGTGAAAATGCAT
CGAAGAGATGCTACTCGTAAATCATCCAACTGGGCTGTATCGGTTATGAA
CTTTCTTCAAGGCAAGAAAGAAGTAAAGATCAGACAAATAGGTGATCCTG
TTTTACGGGAACTTGCAAAACCAGTTGAACAGGCAGCGTTTGTTACCCCA
GAGTTCAAATACATTGTTGATGAACTAGTTTCTATGATGCGAAAATCTAA
CGGAGCTGGAATCTGTGCTCCTCAAATTGGCATTTCATTACAAATTATAG
CATTTGAGGTGACAGGACACGATATTAAATTAGCTATGGATAAATATGGT
AGTAAAGGTATTTCTAAAATGCAAATGACTTTATGTCCTTTGACGGTTCT
TGTGAATCCGAAAATGAAAATACTTGATTCAAGGACAACAATATTACGTG
AGAGTTGTTTAAGTATTGAAAACTATTCAGCCTTAGTACCACGGCATCAA
GAGATTAAAGTGGAAGGGTTAAACCCTGATGGACAGCACATTGACTTACA
TGCAAGTGGATGGACTGCAAGAATTATACAACACGAGATGGACCATTTGC
AGGGAAACCTCTATGTTGATACTATGACATACAAAAGTCTACGGAACGAG
AAATGGCAAACATACAAAACTTAAAAtagatttgttatattttttattca
attttacagttcatgttttgatgtatcttgatacaaatttttataccaaa
aaagAGTCATACACATCCCTTCATGTTGATCAGGAATTCTTTATCTCTAT
GGTTTTATTTTTA

Coding sequence (CDS) from alignment at sc0000102:128256..129368

>TCONS_00010125 ID=TCONS_00010125|Name=TCONS_00010125|organism=Clytia hemisphaerica|type=CDS|length=654bp|location=Sequence derived from alignment at sc0000102:128256..129368 (Clytia hemisphaerica)
ATGCTCCTGACTAAGGTAGTGAAAATGCATCGAAGAGATGCTACTCGTAA
ATCATCCAACTGGGCTGTATCGGTTATGAACTTTCTTCAAGGCAAGAAAG
AAGTAAAGATCAGACAAATAGGTGATCCTGTTTTACGGGAACTTGCAAAA
CCAGTTGAACAGGCAGCGTTTGTTACCCCAGAGTTCAAATACATTGTTGA
TGAACTAGTTTCTATGATGCGAAAATCTAACGGAGCTGGAATCTGTGCTC
CTCAAATTGGCATTTCATTACAAATTATAGCATTTGAGGTGACAGGACAC
GATATTAAATTAGCTATGGATAAATATGGTAGTAAAGGTATTTCTAAAAT
GCAAATGACTTTATGTCCTTTGACGGTTCTTGTGAATCCGAAAATGAAAA
TACTTGATTCAAGGACAACAATATTACGTGAGAGTTGTTTAAGTATTGAA
AACTATTCAGCCTTAGTACCACGGCATCAAGAGATTAAAGTGGAAGGGTT
AAACCCTGATGGACAGCACATTGACTTACATGCAAGTGGATGGACTGCAA
GAATTATACAACACGAGATGGACCATTTGCAGGGAAACCTCTATGTTGAT
ACTATGACATACAAAAGTCTACGGAACGAGAAATGGCAAACATACAAAAC
TTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005679XLOC_005679Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010125-proteinTCONS_00010125-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010125-exon-sc0000102-1491911889:128256..129368TCONS_00010125-exon-sc0000102-1491911889:128256..129368Clytia hemisphaericaexon
TCONS_00010125-exon-sc0000102-1510915933:128256..129368TCONS_00010125-exon-sc0000102-1510915933:128256..129368Clytia hemisphaericaexon
TCONS_00010125-exon-sc0000102-1575043694:128256..129368TCONS_00010125-exon-sc0000102-1575043694:128256..129368Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000102supercontigsc0000102:128256..129368 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.0347	16.5144	5.42113	3.30397	8.15037	6.23142	6.55928	6.09348	5.32447	5.44822	7.98357	4.99219	8.04577	8.37574	13.1034	12.5793	8.5166	8.42669	6.63326	6.34108	6.60018	6.23185	34.3484	29.6935	5.81476	5.94463	5.27368	5.12514	16.0983	20.9662
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR023635Peptide_deformylase
Blast
[Close]
BLAST of TCONS_00010125 vs. Swiss-Prot (Human)
Match: DEFM (Peptide deformylase, mitochondrial OS=Homo sapiens GN=PDF PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 4.234e-44
Identity = 72/174 (41.38%), Postives = 105/174 (60.34%), Query Frame = -3 
Query:  158 QIGDPVLRELAKPVEQAAFVTPEFKYIVDELVSMMRKSNGAGICAPQIGISLQIIAFEVTGHDIKLAMDKYGSKGISKMQMTLCPLTVLVNPKMKILDSRTTILRESCLSIENYSALVPRHQEIKVEGLNPDGQHIDLHASGWTARIIQHEMDHLQGNLYVDTMTYKSLRNEKW 679
            Q+GDPVLR +A PVE+A    PE + +   LV +MR+    G+ APQ+G+  Q++A E+     +    +   +  +  QM   PL V VNP +++LDSR     E C S+  + A VPR Q +++ GL+P+G+ +   ASGW ARIIQHEMDHLQG L++D M  ++  N  W
Sbjct:   69 QVGDPVLRGVAAPVERAQLGGPELQRLTQRLVQVMRRRRCVGLSAPQLGVPRQVLALELP----EALCRECPPRQRALRQMEPFPLRVFVNPSLRVLDSRLVTFPEGCESVAGFLACVPRFQAVQISGLDPNGEQVVWQASGWAARIIQHEMDHLQGCLFIDKMDSRTFTNVYW 238
The following BLAST results are available for this feature:
BLAST of TCONS_00010125 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DEFM4.234e-4441.38Peptide deformylase, mitochondrial OS=Homo sapiens... [more]
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