TCONS_00010073 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010073
Unique NameTCONS_00010073
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1932

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010073 ID=TCONS_00010073|Name=TCONS_00010073|organism=Clytia hemisphaerica|type=transcript|length=1932bp
ggggaaaaagaaaaagaaaatgaataccATAGTAGGAATCACCTTCCTAT
GTACATTAATCAGGGGAATCGCCTCAAAGAGTGATGCTTTCACTTCGATA
CACGATATTAAACAAATTTTACACAAAGAACGAGTTCTTACCAGATATCT
AAATCTCGCTATCGAAGCGGAAAAAGAAAGGTTAGGTGAACTTGAAGGGA
TGAGAGATTCGATGAAAATGAAGTTACTGAATCTTAATATATCATCAATG
GACGACTACGTTGGAAACCCTTTGAATGCATTGCACACTATAAGAAGATT
TACAGCAGACTGGAACGAAATTACAAATACTTTAAATACAACCCGAGTGC
AAGAGTTCTTTAATGAATGGGATAGAAATGTCAAATTACCAACACTTGAA
GATCAAAAAGGTGCTGTCAGTGGTATATTGAGACTTCAAAACTTCTACAA
AATAAATACAAGAAACGTCTCTAGAGGTTTTCTATCGAGTACAAATCCAA
TAAGTAAAACCGAAGAAATTGGCGTTGGGTTGATGTGGGCAATGGGCTAT
GAAGCATTCAAACAAAAAGAGTGGTTTTTGATGAAAGAATGGCTCGACCT
TGCATTAGAACGAATCGGAGATTTGGAACAGAGTGATGGTTGTAAGCGCA
GTTGGATTGTTGACTTCTTATCATATGCTGAATTTCAGCTTGGTGATTAT
GAAAGATCGCTTGACCTAGCATACCAGTGCTTGGAATATTCACCGGATGA
TCAAAAGCATCATAATAACATTGAGCAATGCAAAAAGAAGATATCAAAAG
GCAGGAAGAAATCGTCAACAAAACCCGTTGAACAATTAAGATATCAGTTG
TGCAGAGGAGAGGGAATGAGAAAACCGACAATAGACGAGGAACTACAAAT
GGTGTGTTGGTATAAGAATGATCAACCCATACTTCGTTATAAACCACAAA
AGGTTGAACGTCTTTGGGCAAGACCAGAAATTGTGATGTTTAGAGAATTA
TTGAATGATGAACAAACTGGAACATTGATCGATCTCAGTCTTCAAAAGtt
gGTAAGAGCAGGACTGAATGGACAAGATGTCACTTCCGAAAAATATACCA
ACTCTCGAGTGGCCAAACATGCCTGGCTTAGTATGAAGGAGTCACCAATC
ATCAGAAACATGGGAAAACGTGCTCAAGCAATGACTAACCTGAATATGAA
ATATGCAGAGCATTTACAAATAGCAAATTATGGTATAGGGGGACACTACG
ACGCACACTATGATTATCAAACTGGTGAAAATGTTTTCCCAGACCTGAAA
ACGGGAAACAGAATAGCAACATTAATGTACTATTTATCAGATGTTGAAGC
AGGAGGTGGCACAGCTTTCACTTTTGGTAAAACGACCGTTTACCCATCTA
AGGGAGACGCAGTGTTCTGGTGGAATTTGAAGCAAAATGGAAAAGTTGAT
GAATCATCAAAACATGCAGGATGTCCTGTTCTCATGGGACAAAAGTGGAt
tGCTAACTGGTGGATACATGAGTATGGACAAGAATTTCGAAGACCGTGTC
CACTTGATAAAACATTGTAATGTGGTCAATGAGATAATCCGGGAAATCAT
TATTTGTTAGAAATGGCAATATGTATAGAACTAAAACATTCTACCGGAGC
CACGAGGaaacttttcttattttttctaaattatttcgtccctttctcaa
aaaaaaaactttcccaAAATTTGTTACTCGTGCTGCTCCTCTCTCTAAAT
TGAGTATCAGTAGTGAGAGGATAGGTCAAATTGTAAGCAatgacagaaaa
aaaaaaatgaaattaattacaaaataccgtattactttcAACAAACACAC
CCATTTTTAAGCGCCCCCTTTGAATAACGCCCCTCCGAAAATAACAAAGA
GTGTTTGTTCGAAGTAATACACAGTATACAcg
Run BLAST on NCBI

transcript from alignment at sc0000102:207831..221243+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010073 ID=TCONS_00010073|Name=TCONS_00010073|organism=Clytia hemisphaerica|type=transcript|length=13413bp|location=Sequence derived from alignment at sc0000102:207831..221243+ (Clytia hemisphaerica)
ggggaaaaagaaaaagaaaatgaataccATAGTAGGAATCACCTTCCTAT
GTACATTAATCAGGGGAATCGCCTCAAAGAGTGATGCTTTCACTTCGATA
CACGATATTAAACAAATTTTACACAAAGAACGAGTTCTTACCAGATATCT
AAATCTCGCTATCGAAGCGGAAAAAGAAAGGTTAGGTGAACTTGAAGGGA
TGAGAGATTCGATGAAAATGAAGTTACTGAATCTTAATATATCATCAATG
GACGACTACGTTGGAAACCCTTTGAATGCATTGCACACTATAAGAAGATT
TACAGCAGACTGGAACGAAATTACAAATACTTTAAATACAACCCGAGTGC
AAGGTATAGGATActtatcaaaagttttttttcacatgACGAAAGTCTGG
CCTCCATTCTAAATCTAagatcaatacaccttttcgaccgtagtcgtgcg
gtcaggcgcgtgtcaCTAagttatttaattatccccctcaactcgatcca
atccttttttgacacatttttctattgtctttaggtgcgaaaaaaggact
ggggcGAAAGCGGAAAAATAATGTCCGTGCagtaattggcggctacggtc
gaaaaggtgtattctgcCTCAAAGTAAAAAGGAACGAAAAAGAGCCGTAC
AGGAAATAGTTGAAATCAAAGTTGAAATAGTGGTCTGGAGAAATTGCTGG
CTTTTCTCAGTTTCAAGATTGTATatgcatatgccgacatgagcattttc
gatttctttgccgatttcgggatttgccgacatgggcactttccatttct
ttgccgatgtcgggatttgccgacatgggcactttccattcctttgccgc
aaaatttaacacttctacaaagattttgtattaaatggtttgaaatgaaa
aaagataacagttttaaaagcttttctatgttgaaaaataactattcaac
aatgttcaactcaaaattatagtccttggctgatacttcatatattattc
agaaaatggAGTCAAAATCggtcgaaccttctttttttcccgtggcaaaa
taggtcgaaccttaaaaaatacgaacggcagttaaagggaTAGACTAGCT
ATAAAAaagatcaaaagttttttctctaGCTTAAATACCGGATGATAAGA
GGTTATTAATAAGAGGCCCTCTTTAACTTGCGAATTCTTTTAGAGTTCTT
TAATGAATGGGATAGAAATGTCAAATTACCAACACTTGAAGATCAAAAAG
GTGCTGTCAGTGGTATATTGAGACTTCAAAACTTCTACAAAATAAATACA
AGAAACGTCTCTAGAGGTAATACAATttaattgaaaatctttttgcacTT
TCATAATTTCGTCCCTTTAAAGTAGTGAACCTCCCTTTCCCCCTACGAAA
ATTTTTCAACTATatggaattttcaattttcaattttcactaattttggA
GGTTTAAATGACAATCCTCTTACGAAATAggaaataagaaataaaaagac
CCCCGTACGGGAATGTTTAAAAACCACACTACTCCCTAGGGTAAAAACTA
TGATGGGCTAATGAGCCTCCTCCcatcgagtttaaagcccaaattggcta
gagtagaatctctaaccattcccaggcaagaaaaagtgaagccacttatt
tcccatccagaacgcaccTAGAACACGCCTTAATCATGACAacagattgt
atctagcggtttctttgtttttgaggactgcattctTTGAAATCTAGCCG
tagattttaatttcaatctggcttttgtgtaaaaaccacgcgcaggCGTt
aaaataagtggtttcatttcccatccaggagtctcgagtctagcaattca
ggcttggaagtcaatgccTCCTCCCTCTCCCTCGAGTTCATTACTGAAGC
ATTGTGTATATTATTATCGTCCCAGCCCTCCTGTTTAGTTACCACGATTA
TTAACTAAATTATTAAGTAAACATGATAGTAGTGTTCTTAGAGTcgtaat
aattaatttttctagGTTTTCTATCGAGTACAAATCCAATAAGTAAAACC
GAAGAAATTGGCGTTGGGTTGATGTGGGCAATGGGCTATGAAGCATTCAA
ACAAAAAGAGTGGTTTTTGATGAAAGAATGGCTCGACCTTGCATTAGAAC
GAATCGGAGATTTGGAACAGAGTGATGGTTGTAAGCGCAGTTGGATTGTT
GACTTCTTATCATATGCTGAATTTCAGGTGATGATGAAATCcgaattttt
tgaatattttttgcataaaactAACGCTCTAtgatttgattttcaaaggG
AATAGGGCtttcatcgaataatggagcgtatcgaatagtagagcgtcgtt
tataagCGTTTCTCATTGACGgtgtatttcaaaattatcGAGTAATGGAG
CATATTTAataatagaacgtcgaattaaagagcgtcaactgtacagAAGA
GCAATATAACCGAGCATTCGTTGACGCCTTCGTCAGAACCTCAAATCCTT
GCATGTTTCTTGTTTCATTCAGTTAAGTTTTGTTCATTGTGGCTGCCTAG
CCATTGGCCGGTTGCAAGCGCATTTGGATCATTGATATCTCAAAACATAA
GTGTACCTGTTGAATAGAGAGACTGAAGGGAAACTTTTAGATTACAGTTT
TTGTCCGGTGGCGAAATGGCCCTTTTTGCTTCAACCTTTACAAGAAGTAT
CTAGGTTATTCTCTAAATCAGTGTTTGCCGAACTTGAGCATTATGTGAAG
CATTAGAGAATTTAAGGGCTACGATCATCATGGTCTTTGGCCAATGTTCC
ATAGAAGATTTCCCCCAGATTTGCCAGCTCCCCATACTTGTCAAGGTTAA
CCAAGACAGCTCCTGGACTATTGGCAGACTAGTCATcaacaaaaatcttt
aaaatctggAGCATTCTAGAAACTACTGTTTTAGCAGGTTTCATTGTGAT
CAAGGGGTTTCAACGTATCTTTGTCTTTTGTTTTATAGCTTGGTGATTAT
GAAAGATCGCTTGACCTAGCATACCAGTGCTTGGAATATTGTAAGAAAGA
GAGCCTAGATATCTACTCTGTATTTCATAATTCTGATGTTTACTACTAGA
TGTTTGTTAACCCAGGGTCAGTAAATTCGTAGCTATGAATAATAATGGAA
TGTATAACAAGCTGTTCttaagttgttgttgttgaccGAAATTAATCTCG
CGTAGGTACTGTTTCaataaaaatccataaaatggggggggtgATTTTGA
GGTGGCGATTACGTCATCTCATCGATGtcgaaattttcaccaaagatgcc
aaTTTATATTTGATGCACACTTGCAAAATTTCCAGTTtttggataaatat
ttcaaaatttgaatatggatGTGTTATAGTTCTAAAATATTACCACAGCT
ACAattaactctctctaattcgaatctctgctattaaaatcattttataa
ttcgaactaaaatatggTCCTCTCAGCTATAGAAATTAGCATAAATTAGC
AttaatctttctctaattcgaagaaaattccaGGTCCctcgaagatcgaa
ttagagagagtcatcTGTATCTTTCTTTTAGCACCGGATGATCAAAAGCA
TCATAATAACATTGAGCAATGCAAAAAGAAGATATCAAAAGGCAGGAAGA
AATCGTCAACAAAACCCGTTGAACAATTAAGATATCAGTTGTGCAGAGGA
GAGGGAATGAGAAAACCGGTAAGTCTATATAGAAAGAAATatagaagaaa
atattttgtggATAGTTCCTATCGCAGAAAAGACATCGTTAAAAGCTGCA
ATTTATTTTGCTTATACcaaattctaaaaaagaattctCAAACTAACCGA
AAATCATTTGGTAAAAATATTCGTGTTTAAAAGATTTCGTCACCCAAACt
attttttcgtcacttttaaccctttaagtgccacttttttctaagttttt
ttaacgaaaatctcttgttcaaactttaaaggcttatatctccggatcta
gaaggagttagtaGCTCGTTTATAGTTCggtttttgcttgaccatgaagc
ccaatccaattcctacgagttataccaaaaatgacgatttctaacttaaa
actgggcattacaggagggcctCAATCTCCTACATaacccatgtctgata
tatacgacattgacacttaaagggttaactgGCGAATTTTCTAACGATAA
GTATGTCTAcgtcactgaaaaaaaaatgcaaagacCGTAGTCTAGTTTAA
ATACCTTATAGGGAAAAACttcatcggggaaaattttcgtcggtaaaaat
tcgtcacttgctggtagttggtaaacgcattaaggccgggggaaattttc
gtcggggagaatattcgtcacttgtccaaaatttcgccgtcacttttccc
cgacgaataAGGTATGCAAGATTGAGAACGGGGAATTACGGCCGTCGTTC
TGAATAGCAAGTTAGCCGCAGAAGGCACTAAATACAACTCGATGGTTAGT
CAAAATATGATACTTTAATGGAATAAGTTTTTgcgaggattaaattttgc
ggatttcctAATGGAAAATTGGAAAGGTCCTATCCGAGAAATATTTTTgg
tcaaaacagaaaaaatgtcaGATAATTACTTTCAAAAGGTTAactgacat
caaaaaagtttagaGTTGCGATAGTAAAGtaaagtttaaaaattgaaaag
tataTCACACTTTCCCGTTTCAGACAATAGACGAGGAACTACAAATGGTG
TGTTGGTATAAGAATGATCAACCCATACTTCGTTATAAACCACAAAAGGT
TGAACGTCTTTGGGCAAGACCAGAAATTGTGATGTTTAGAGAATTATTGA
ATGATGAACAAACTGGAACATTGATCGATCTCAGTCTTCAAAAGGTAACC
CTTAacaccttaagggaactaattttcttttttttgtcgcGAAAGCCGCA
ACAATTAGTTCCCACGAATTAccaattttgccatttttcatcaaaagatt
tgaaaaaatgaaagaaatgtgtccaaaatagggcaaaagcacgaaaatta
gtagaccttatcggagtttttgatttctctaaaaaaacgttgcattgtgg
gattgtttcgagtgtattaaaATAGAATTCCCTtaaggaattcctaagag
atttccattgtaatacactcgaaacaatcccacaatgcatcgctttttta
gaaaaatcaaaaactccgataaggtctattcccgcgaaatgcgaaaattg
tGATATCGCTTTTGTTTGTATTGATAAACATTTGGACGACGCAAAAGGCT
CATAAAACCTATTAGAATCAAACCTAGAAACGATGAAGATCAAACCTAAA
AACGATGAAGGATACTTAACTGATTCTATACCNCGGACGACGCAAAAGGC
TTATAAAACCTATTAGAATCAAACCTAGAAACGATGAAGGATACTTAACT
GATTCTATATCATGTTAGACTAttttcagacgttacggttccactccgtt
ccgaaacgaaacggtctcaacacaagtgtgaacgtcaaaaaagaagacgt
tacaaaacaaaacagatcgaaacggttttgcaccacttttttcatcggag
cAGAACTACTCCGAAACGTTCCGTAACctatatgaacacactcgatccgt
aacgaaaatcgtaccggagcgaaacggaacagtaacgtgtgaacatggtc
ttaagcTTGTAATAAGTATGACTTCCTCCCTAAATTGCGTAttgacaaaa
aacttttaattttcagttgGTAAGAGCAGGACTGAATGGACAAGATGTCA
CTTCCGAAAAATATACCAACTCTCGAGTGGCCAAACATGCCTGGCTTAGT
ATGAAGGAGTCACCAATCATCAGAAACATGGGAAAACGTGCTCAAGCAAT
GACTAACCTGAATATGAAATATGCAGGTATAAAAAATCCTCGCTAATTCG
ACTCTCTTTTAATCGAATCTATCTATGGAGGTTTTTTACATGTTTTGTCA
GTGATATTCACCATTATGGAAGAAAGCGTTCGAGGAAAATAAGAGGGGAA
TAAGTGTGGTTTTGGAATCCTACTGGTaaaaaccactgacctttatatat
ccatggaccaagctatatccgccatctttgatcgaagggATATATAAACA
GTGgtaaactagccgtattgtataagggttgcgaagcgatccagactcta
cctcaattcgcaagttgctagcaaaaatAAGAGCCACTTTGATAAAACCC
TAAAAGAGACAGGGTCTTAAGCCTTATAATACCCCAAACACACCATAAAA
AACCACAGcagcacaacacccgccgccccGCGAAACGCTCTTTCTTTCCT
TCTCTTAGTTCTTCtaatgtaaatggtgccttaaaaaATCGAACGACATT
CGTCGAACGTTCGAACATTTTGTTATTCTAATCGTCTGttgaaatcatca
aaagtaaacaaaagcaaaaaaaatctacaaaagatggcttgttgttgGTT
CTTGGCCAGTTTTGATTTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNttttgcaaggtaagtttagtTCACTTA
AAAGAGCACCCCTCCCGCCCGCGCGACCTGCAAAAACTTCTCATTtttat
tgaccttatttgatacttaatagttacttttaaaagtcaaggaatgatga
agatcctttctgtaataagtattatttttatcaatatttcgtcgcatcaa
aataaaaaagctccaagtctatttttgttgttttgagaaaaaagacttta
aattatttttcattgaatcatgtaaaaaaccattaacatttgaaatattt
ttgtgttaaaaaggCCTTAAGTCCAAAATTGTTTCCACGCTGGACTTGAG
GCTTTTTTTGCCCTAAACTGATGTGACTTAATGCTTTTTtaccttgaaaa
taaaaaattcttatttttctaaaaaatggggtgtaaagcatcggtatggt
cataactcaattttcccaaaaaaatggacttaaagcttttttaatttGAT
GCGACGATTTATTTTAGAGCATTTACAAATAGCAAATTATGGTATAGGGG
GACACTACGACGCACACTATGATTATCAAACTGGTGAAAATGTTTTCCCA
GACCTGAAAACGGGAAACAGAATAGCAACATTAATGTACTATGTAAGTAT
AAATCATTCCCATATACTCTTCTATTATATTCgtatctttctataattcg
accTTATTCTCAGTTCCCGTCATGTACTCTCTTAAAATACTCTATGTAAT
TCAAATCTCTGTTATTCGggcaaataagattccccgtttTTGAGTTCGAA
TTACTGAGAGtcaaattgggcttttccagaaaaaaaccgtacaccccttg
ttgaggagtccatttccattccaagggggtatggtttgaaatgcagtgga
attccatagcagtagacaaaaatccgtcataaataagtggaattccatgg
gggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNATaagtggaattccatgggggt
aatgaatgaaaatctgtaaaaattcggaattccagaggggtatgatccta
aaattgcctggaattccaagggggtggTAATTTACAAAAGGTTGGAGCTC
CTCAACACggggtgtacggtttttttctggaaaagcccattgtcaTGACA
TGGATTATAAACGGCTTTAATGTACGGGTCCTGAGGGATGGTCCCTTACA
AAGAATTACCTCCATCcggaaaaataattaaaaaataaaacaattttttc
tttaatagTTATCAGATGTTGAAGCAGGAGGTGGCACAGCTTTCACTTTT
GGTAAAACGACCGTTTACCCATCTAAGGTAAGAAAACAGGCTATGTTTAT
TTTTCCGAACTAAGATTCAACTGGCAACTTTCCAACGAAAAAAGACTAAA
AGATTAAGGTAAGTCAAGGAAAAGTCTGCAGGATCGATGTCCGAGAAAGA
TTGATGAATAGAGAGtttttcgaataaaaaaattaacctTAATTATAACC
TTTAGTGTCCTTATGTAGAAGACCCCTAAAATGTAGATCatgtttgattg
gttcattATTTGAACAGTGGGTTCGACTGACAATTCCTGGATTAATAACA
TACAGGCGTGATTTATCGTTGTTTTAACTATGTAGTTAAAAGTCTCCGca
ataaacaaagaggaatctAAATATTGGGGGCAAACTATCCGGATCGGGGT
TGTAGATGGTATAATTTGTCGTTCCTTTTGAATTTTCTCGTTCTATGTGG
TCCTTTTTGTCTATTCTTAGTAAATGCTGGATTCTTAAGAATAAGCCAAT
CTAAATGACGACCTAAAGTTTTGGCACTCTTTACcgtaaatgaaaataaa
atctacaaATACTAGATATTCATAAAATTTACGATGTAATGTTTTATGTG
GAAGCACAAAATAGCCCGGATAATTGCCACTAGTtatattgtttaaattc
aaaattattggTAAACACCCGGGTATTTTTATGGGTGCCTCCGTATTAAA
CAATACGTCATGAAAATCACAATTTAGAGTGACATCCATGCAATTGGTAc
tacaatctcggtcaaaatatattgagaattttggctaattcctcgttttt
agcaacTTAAAGTTCGGGGGAGAAAGTCGcgtttgggctaattgataaat
ttattcaaatatttcaattcgagaggggtttatagacttccaggctatat
tctgagccctattggatcattcttggacttttggatcctcagatcctaag
gtcataagtcttaagtctagcgttaaaactcagagttaaaactctaccct
tcgaacctaatttaaatcgtttgtggttgtaagattttgtgggaatttcc
cttttttctcaaatattacaacTTTGATTGTAGGGAGACGCAGTGTTCTG
GTGGAATTTGAAGCAAAATGGAAAAGTTGATGAATCATCAAAACATGCAG
GATGTCCTGTTCTCATGGGACAAAAGTGGAGTAGgtaatttttgtaagaa
aactgAGATTGAGTGAGAAGGGAGTTTGTCCCGGGAGATGTATCGTTGAA
AAgcttaatttttttcaacagTGCCAGTGTTATGATTAGGGTTCCATAAA
GACGACATTAAAAAATTCTCACCCTTGTAGTGTCTGGACCTTTTTTGTAA
AGATTTAGGaataaatagaaaattttgagaGCATTTAGCCCAAGGGATAC
TAGTTTGATTTATATCAAGTTTCTGGATAACAAAGATACATGCAGATCAT
TATAATGTTGCATTTCAtatatcttttttatattttagttGCTAACTGGT
GGATACATGAGTATGGACAAGAATTTCGAAGACCGTGTCCACTTGATAAA
ACATTGTAATGTGGTCAATGAGATAATCCGGGAAATCATTATTTGTTAGA
AATGGCAATATGTATAGAACTAAAACATTCTACCGGAGCCACGAGGaaac
ttttcttattttttctaaattatttcgtccctttctcaaaaaaaaaactt
tcccaAAATTTGTTACTCGTGCTGCTCTTCTCTCTAAATTGAGTATCAGT
AGTGAGAGGATAGGTCAAATTGTAAGCTAtgacagaaaaaaaaatgaaat
taattacaaaataccgtattactttcAACAAACACACCCATTTTTTAAGC
GCCCCCTCGGCAATAACGCCCCTCCGAAAAAAACAAAGAGTGTTTGTTCG
AAGTAATACACAGTATACACAGTATACAcgtattttaaaagaacaaaggc
ttagatggccaaaatgttaagaacaaattaagaacattttaaggctttgt
ggactcaaaaacatcatttttcttatgaaaatggTCAAACATACTTCacg
aaatggtcaaaataagaacatgttagaaacatttttaggcttaaaaatca
agttaagaacttccaaaggcttcaaaaattttggaagttcttataaaaaa
acgtgcatttgTTTGAAAGATTAAGAAGACTCACCAGCTCACTTGCCACT
TGTAGAACACCGATCAAATAATCATCCAAATCCAAATAAAATCCGTCTTC
CCAACGTAACTTAACtgtaacaaaaaatatttaattttatttttacattt
ttctaaatACAAACAAACAACttcctctaattcgaacctctattactcga
tGTTATCTATAATATGACTTTCTTAAAGAATATTAGTCCCTTCGAAtcgt
tctctaattcgaagaaagttCTTAGTCCTGTGAAGACCGAATTTGAGAGA
TTCAACTTCAGCACTATTATAGTTGCATAATCGAGCTCGTCGCGATTTAT
TTTTATAGATtatgacattttttaaaaacaatttaattaaatatattttt
attctaattttatgaaaatgaaatgattttaaTTTAAACAATTATTCTAA
CATGCAAACTCCTTCTGTCCTTCGAAGCCCAATGATTTGGAATTAAAACA
CAGAGGCCTATTTAAAAAGTTGAAGGGTTTAAAAACATTCAGANCcgttt
tttaactttaaacatagacatattatataccaatcgttcacaaattttat
gctgattaagaaaaatgtcagaaccatggtctgaaaatttcgttatctgg
agatatgaagcactttcggttttgattttttgaaatgactaattttggtt
ccaaatttgcgtggctgtaacatttgattggcttacttgatttacttgaa
attttcggagggtcttgcctaccgttcaaataataaaattcaggaaaatt
tatttttctacgtgaatttcgaaatccataatggcggattcaaaactttt
tttcgtcACATGGACacttaggctctgctagcctaagaaaaatatttgag
cttaaaaccctgcatatataccaatcgatcagaaattttatgctgattaa
gaaaaaggtcagaaccatggtctgaaaattttgctatctcgagctatgaa
gtactttcgttttcaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTGGACCTTTTTTGTAAAGATTTAG
GaataaatagaaaattttgagaGCATTTAGCCCAAGGGATACTAGTTTGA
TTTATATCAAGTTTCTGGATAACAAAGATACATGCAGATCATTATAATGT
TGCATTTCAtatatcttttttatattttagttGCTAACTGGTGGATACAT
GAGTATGGACAAGAATTTCGAAGACCGTGTCCACTTGATAAAACATTGTA
ATGTGGTCAATGAGATAATCCGGGAAATCATTATTTGTTAGAAATGGCAA
TATGTATAGAACTAAAACATTCTACCGGAGCCACGAGGaaacttttctta
ttttttctaaattatttcgtccctttctcaaaaaaaaaactttcccaAAA
TTTGTTACTCGTGCTGCTCCTCTCTCTAAATTGAGTATCAGTAGTGAGAG
GATAGGTCAAATTGTAAGCAatgacagaaaaaaaaaaatgaaattaatta
caaaataccgtattactttcAACAAACACACCCATTTTTAAGCGCCCCCT
TTGAATAACGCCCCTCCGAAAATAACAAAGAGTGTTTGTTCGAAGTAATA
CACAGTATACAcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005649XLOC_005649Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010073-exon-sc0000102-1491911889:207831..208183TCONS_00010073-exon-sc0000102-1491911889:207831..208183Clytia hemisphaericaexon
TCONS_00010073-exon-sc0000102-1510915933:207831..208183TCONS_00010073-exon-sc0000102-1510915933:207831..208183Clytia hemisphaericaexon
TCONS_00010073-exon-sc0000102-1575043694:207831..208183TCONS_00010073-exon-sc0000102-1575043694:207831..208183Clytia hemisphaericaexon
TCONS_00010073-exon-sc0000102-1491911889:209024..209146TCONS_00010073-exon-sc0000102-1491911889:209024..209146Clytia hemisphaericaexon
TCONS_00010073-exon-sc0000102-1510915933:209024..209146TCONS_00010073-exon-sc0000102-1510915933:209024..209146Clytia hemisphaericaexon
TCONS_00010073-exon-sc0000102-1575043694:209024..209146TCONS_00010073-exon-sc0000102-1575043694:209024..209146Clytia hemisphaericaexon
TCONS_00010073-exon-sc0000102-1491911889:209846..210057TCONS_00010073-exon-sc0000102-1491911889:209846..210057Clytia hemisphaericaexon
TCONS_00010073-exon-sc0000102-1510915933:209846..210057TCONS_00010073-exon-sc0000102-1510915933:209846..210057Clytia hemisphaericaexon
TCONS_00010073-exon-sc0000102-1575043694:209846..210057TCONS_00010073-exon-sc0000102-1575043694:209846..210057Clytia hemisphaericaexon
TCONS_00010073-exon-sc0000102-1491911889:210819..210870TCONS_00010073-exon-sc0000102-1491911889:210819..210870Clytia hemisphaericaexon
TCONS_00010073-exon-sc0000102-1510915933:210819..210870TCONS_00010073-exon-sc0000102-1510915933:210819..210870Clytia hemisphaericaexon
TCONS_00010073-exon-sc0000102-1575043694:210819..210870TCONS_00010073-exon-sc0000102-1575043694:210819..210870Clytia hemisphaericaexon
TCONS_00010073-exon-sc0000102-1491911889:211412..211548TCONS_00010073-exon-sc0000102-1491911889:211412..211548Clytia hemisphaericaexon
TCONS_00010073-exon-sc0000102-1510915933:211412..211548TCONS_00010073-exon-sc0000102-1510915933:211412..211548Clytia hemisphaericaexon
TCONS_00010073-exon-sc0000102-1575043694:211412..211548TCONS_00010073-exon-sc0000102-1575043694:211412..211548Clytia hemisphaericaexon
TCONS_00010073-exon-sc0000102-1491911889:212554..212724TCONS_00010073-exon-sc0000102-1491911889:212554..212724Clytia hemisphaericaexon
TCONS_00010073-exon-sc0000102-1510915933:212554..212724TCONS_00010073-exon-sc0000102-1510915933:212554..212724Clytia hemisphaericaexon
TCONS_00010073-exon-sc0000102-1575043694:212554..212724TCONS_00010073-exon-sc0000102-1575043694:212554..212724Clytia hemisphaericaexon
TCONS_00010073-exon-sc0000102-1491911889:213597..213756TCONS_00010073-exon-sc0000102-1491911889:213597..213756Clytia hemisphaericaexon
TCONS_00010073-exon-sc0000102-1510915933:213597..213756TCONS_00010073-exon-sc0000102-1510915933:213597..213756Clytia hemisphaericaexon
TCONS_00010073-exon-sc0000102-1575043694:213597..213756TCONS_00010073-exon-sc0000102-1575043694:213597..213756Clytia hemisphaericaexon
TCONS_00010073-exon-sc0000102-1491911889:215048..215172TCONS_00010073-exon-sc0000102-1491911889:215048..215172Clytia hemisphaericaexon
TCONS_00010073-exon-sc0000102-1510915933:215048..215172TCONS_00010073-exon-sc0000102-1510915933:215048..215172Clytia hemisphaericaexon
TCONS_00010073-exon-sc0000102-1575043694:215048..215172TCONS_00010073-exon-sc0000102-1575043694:215048..215172Clytia hemisphaericaexon
TCONS_00010073-exon-sc0000102-1491911889:215889..215957TCONS_00010073-exon-sc0000102-1491911889:215889..215957Clytia hemisphaericaexon
TCONS_00010073-exon-sc0000102-1510915933:215889..215957TCONS_00010073-exon-sc0000102-1510915933:215889..215957Clytia hemisphaericaexon
TCONS_00010073-exon-sc0000102-1575043694:215889..215957TCONS_00010073-exon-sc0000102-1575043694:215889..215957Clytia hemisphaericaexon
TCONS_00010073-exon-sc0000102-1491911889:217014..217110TCONS_00010073-exon-sc0000102-1491911889:217014..217110Clytia hemisphaericaexon
TCONS_00010073-exon-sc0000102-1510915933:217014..217110TCONS_00010073-exon-sc0000102-1510915933:217014..217110Clytia hemisphaericaexon
TCONS_00010073-exon-sc0000102-1575043694:217014..217110TCONS_00010073-exon-sc0000102-1575043694:217014..217110Clytia hemisphaericaexon
TCONS_00010073-exon-sc0000102-1491911889:220811..221243TCONS_00010073-exon-sc0000102-1491911889:220811..221243Clytia hemisphaericaexon
TCONS_00010073-exon-sc0000102-1510915933:220811..221243TCONS_00010073-exon-sc0000102-1510915933:220811..221243Clytia hemisphaericaexon
TCONS_00010073-exon-sc0000102-1575043694:220811..221243TCONS_00010073-exon-sc0000102-1575043694:220811..221243Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000102supercontigsc0000102:207831..221243 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.209824	0.182471	1.4211	0.187162	0.225803	0.422788	1.03601	1.4666	0.177939	1.87152	0.46723	1.09175	0.897569	3.31779	0.39554	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
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BLAST of TCONS_00010073 vs. Swiss-Prot (Human)
Match: P4HA1 (Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapiens GN=P4HA1 PE=1 SV=2)

HSP 1 Score: 266.544 bits (680), Expect = 5.259e-80
Identity = 168/515 (32.62%), Postives = 284/515 (55.15%), Query Frame = 2 
Query:   89 FTSIHDIKQILHKERVLTRYLNLAIEAEKERLGELEGMRDSMKMKLLNLNISSMDDYVGNPLNALHTIRRFTADWNEITNTLNTTRVQEFFNEWD-RNVKLPTLEDQKGAVSGILRLQNFYKINTRNVSRGFLSSTNPISKTEEIGVGLMWAMGYEAFKQKEWFLMKEWLDLALERIGDLEQSDGCKRSWIVDFLSYAEFQLGDYERSLDLAYQCLEYSPDDQKHHNNIEQCXXXXXXXXXXXXXX---------------------PVEQLRYQLCRGEGMRKPTIDEELQMVCWYK--NDQPILRYKPQKVERLWARPEIVMFRELLNDEQTGTLIDLSLQKLVRAGLNGQDVTSEKYTNSRVAKHAWLSMKESPIIRNMGKRAQAMTNLNMKYAEHLQIANYGIGGHYDAHYDYQTGE--NVFPDLKTGNRIATLMYYLSDVEXXXXXXXXXXXXXVYPSKGDAVFWWNLKQNGKVDESSKHAGCPVLMGQKWIANWWIHEYGQEFRRPCPL 1555
            FTSI  +  ++H E+ L   L   I+AE+++L +++   + +  +L +      + +VG+P+NA   ++R   +W+E+ N +       F +    +    P  EDQ GA   +LRLQ+ Y ++T  +S+G L     +     +     + +G  A+ + +++  + W++ AL ++ + E S   K S ++D+LSYA +Q GD +++L L  + LE  P+ Q+ + N++  +  ++K +  + +                      P  Q    LCRGEG+ K T   + ++ C Y   N  P     P K E  W +P I+ F ++++D +   + DL+  +L RA ++       +  + R++K AWLS  E+P++  +  R Q +T L++  AE LQ+ANYG+GG Y+ H+D+   +  + F +L TGNRIAT ++Y+SDV AGG T F     +V+P KG AVFW+NL  +G+ D S++HA CPVL+G KW++N W+HE GQEFRRPC L
Sbjct:   22 FTSIGQMTDLIHTEKDLVTSLKDYIKAEEDKLEQIKKWAEKLD-RLTSTATKDPEGFVGHPVNAFKLMKRLNTEWSELENLVLKDMSDGFISNLTIQRQYFPNDEDQVGAAKALLRLQDTYNLDTDTISKGNLPG---VKHKSFLTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVS-VLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIMAKEKDVNKSASDDQSDQKTTPKKKGVAVDYLPERQKYEMLCRGEGI-KMTPRRQKKLFCRYHDGNRNPKFILAPAKQEDEWDKPRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPITGDLETVHYRISKSAWLSGYENPVVSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFKELGTGNRIATWLFYMSDVSAGGATVFPEVGASVWPKKGTAVFWYNLFASGEGDYSTRHAACPVLVGNKWVSNKWLHERGQEFRRPCTL 530
The following BLAST results are available for this feature:
BLAST of TCONS_00010073 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
P4HA15.259e-8032.62Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapie... [more]
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