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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010061 ID=TCONS_00010061|Name=TCONS_00010061|organism=Clytia hemisphaerica|type=transcript|length=1091bp
GACAAAGAGCTTGTATGAGTTTGTATACATGCGAAGTAAAAATCGAACGG
AAAAACCAAGTTTTTTAATATCATATGACTGAGAATCTAACAATATTTAA
CAACATTGAGATATTACATATTACAAGGACTTGTCAACATTGGATAATTC
AGTATTGTAAAGAAGCAAAATGACCAGATTCAAGGAGAAATTTTGTAATA
AAGATCTTATCAACCTCATACCAAAATTTGTGTTGATTGGAGCATGTTCT
ATCACTTTTATTGTCATTCTGGTATCAGTGACGTCCAACTGTTGGGCTAA
CAGTAAAATTCATTATGAATCAAGAGgTCTGTGGAAATTCTGTCATCACA
TTGACGACGATCCAGACAAAGCAGTATTGTGCCCAAGTATCAATAACGCC
TCAGTCATACAAATATACGAAAAACGACCGCCCACAACGCCCGAATGGAT
ACGAGAAGGATATATCCCTGATTGGTTAATGGCTGTTCGAGTTGTCATGA
TAATGGCTGCTGTGTTTGAGTTTATCGCCATAATGGCAGCAGTTTTCACA
CTTTTCATCAAGAAGTTTCATGGTTATATTACCAGCATCTTTAGTTCCAT
TGCGTTTGCTTTACTGCTTGTTGGAGTCTATTTGTATTCCGATCGAACGA
ATTTCGCCGTTGAGGAGTATGCTTGTGGTGTTGGATGGGGCATGGGATTT
TTAGCGGTTATCTTTTCATTCTTGTCAGCTTTCATTGGACTTTGTACGTT
TTAGAATTCCCTTGGAATGTGGCAGAGAAGGGCCATAAGTCcctaatttt
tttataatttatctcagtgtaaagtatttttttactgGTTATCATTATGA
TCATGTTAAAATAAACTATTAAAGATTATTGTTACATAAACTTTATCTTa
catataccttaagggaactaattttaccgagaactaattttcgcggtcga
aaaaatattcaaaaagaatTACATTTTTAGCGTCCtacatttctttttat
aagcaagtgtctgccccttggtcaggctcatatatgcttaagttttcaaa
atgcttacgaatttttgtgaaatttcagaaattttgtaaaa Run BLAST on NCBI protein sequence of TCONS_00010061-protein >TCONS_00010061-protein ID=TCONS_00010061-protein|Name=TCONS_00010061-protein|organism=Clytia hemisphaerica|type=polypeptide|length=194bp
MTRFKEKFCNKDLINLIPKFVLIGACSITFIVILVSVTSNCWANSKIHYE
SRGLWKFCHHIDDDPDKAVLCPSINNASVIQIYEKRPPTTPEWIREGYIP
DWLMAVRVVMIMAAVFEFIAIMAAVFTLFIKKFHGYITSIFSSIAFALLL
VGVYLYSDRTNFAVEEYACGVGWGMGFLAVIFSFLSAFIGLCTF Run BLAST on NCBI transcript from alignment at sc0000102:47194..48627+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00010061 ID=TCONS_00010061|Name=TCONS_00010061|organism=Clytia hemisphaerica|type=transcript|length=1434bp|location=Sequence derived from alignment at sc0000102:47194..48627+ (Clytia hemisphaerica)
GACAAAGAGCTTGTATGAGTTTGTATACATGCGAAGTAAAAATCGAACGG
AAAAACCAAGTTTTTTAATATCATATGACTGAGAATCTAACAATATTTAA
CAACATTGAGATATTACATATTACAAGGACTTGTCAACATTGGATAATTC
AGTATTGTAAAGAAGCAAAATGACCAGATTCAAGGAGAAATTTTGTAATA
AAGATCTTATCAACCTCATACCAAAATTTGTGTTGATTGGAGCATGTTCT
ATCACTTTTATTGTCATTCTGGTATCAGTGACGTCCAACTGTTGGGCTAA
CAGTAAAATTCATTATGAATCAAGAGGTATATTTTTATCAATTGCTTTTG
TTAGGGCTATTTTGAAAGTACTTCTGCAAGTATCAAGAGAATGAGATCTC
CAGTATTACCTTTCTTTCTATGACTGTTGCTTGttttaatattaaaaaat
aatcacgTAGGACCATAATTAAagtcaaaaatttaattctaattttgatt
caaaattttgacgttATTTTGTTATCTTGTCAAGGATAAAATATCTGAAA
TGGAAAAAAGGCTTCTTATCCCCCTCTTATCCTCACTAGAACAAAAGATA
AGAACAGCTAGAGCTAATTCAAAATGATTCTTAACACCAATAACCAAACC
AttcatttcaacttttcaggTCTGTGGAAATTCTGTCATCACATTGACGA
CGATCCAGACAAAGCAGTATTGTGCCCAAGTATCAATAACGCCTCAGTCA
TACAAATATACGAAAAACGACCGCCCACAACGCCCGAATGGATACGAGAA
GGATATATCCCTGATTGGTTAATGGCTGTTCGAGTTGTCATGATAATGGC
TGCTGTGTTTGAGTTTATCGCCATAATGGCAGCAGTTTTCACACTTTTCA
TCAAGAAGTTTCATGGTTATATTACCAGCATCTTTAGTTCCATTGCGTTT
GCTTTACTGCTTGTTGGAGTCTATTTGTATTCCGATCGAACGAATTTCGC
CGTTGAGGAGTATGCTTGTGGTGTTGGATGGGGCATGGGATTTTTAGCGG
TTATCTTTTCATTCTTGTCAGCTTTCATTGGACTTTGTACGTTTTAGAAT
TCCCTTGGAATGTGGCAGAGAAGGGCCATAAGTCcctaatttttttataa
tttatctcagtgtaaagtatttttttactgGTTATCATTATGATCATGTT
AAAATAAACTATTAAAGATTATTGTTACATAAACTTTATCTTacatatac
cttaagggaactaattttaccgagaactaattttcgcggtcgaaaaaata
ttcaaaaagaatTACATTTTTAGCGTCCtacatttctttttataagcaag
tgtctgccccttggtcaggctcatatatgcttaagttttcaaaatgctta
cgaatttttgtgaaatttcagaaattttgtaaaa Coding sequence (CDS) from alignment at sc0000102:47194..48627+ >TCONS_00010061 ID=TCONS_00010061|Name=TCONS_00010061|organism=Clytia hemisphaerica|type=CDS|length=1170bp|location=Sequence derived from alignment at sc0000102:47194..48627+ (Clytia hemisphaerica)
ATGACCAGATTCAAGGAGAAATTTTGTAATAAAGATCTTATCAACCTCAT
ACCAAAATTTGTGTTGATTGGAGCATGTTCTATCACTTTTATTGTCATTC
TGGTATCAGTGACGTCCAACTGTTGGGCTAACAGTAAAATTCATTATGAA
TCAAGAGgTCTGTGGAAATTCTGTCATCACATTGACGACGATCCAGACAA
AGCAGTATTGTGCCCAAGTATCAATAACGCCTCAGTCATACAAATATACG
AAAAACGACCGCCCACAACGCCCGAATGGATACGAGAAGGATATATCCCT
GATTGGTTAATGGCTGTTCGAGTTGTCATGATAATGGCTGCTGTGTTTGA
GTTTATCGCCATAATGGCAGCAGTTTTCACACTTTTCATCAAGAAGTTTC
ATGGTTATATTACCAGCATCTTTAGTTCCATTGCGTTTGCTTTACTGCTT
GTTGGAGTCTATTTGTATTCCGATCGAACGAATTTCGCCGTTGAGGAGTA
TGCTTGTGGTGTTGGATGGGGCATGGGATTTTTAGCGGTTATCTTTTCAT
TCTTGTCAGCTTTCATTGGACTTTGTACGTTTTAGATGACCAGATTCAAG
GAGAAATTTTGTAATAAAGATCTTATCAACCTCATACCAAAATTTGTGTT
GATTGGAGCATGTTCTATCACTTTTATTGTCATTCTGGTATCAGTGACGT
CCAACTGTTGGGCTAACAGTAAAATTCATTATGAATCAAGAGgTCTGTGG
AAATTCTGTCATCACATTGACGACGATCCAGACAAAGCAGTATTGTGCCC
AAGTATCAATAACGCCTCAGTCATACAAATATACGAAAAACGACCGCCCA
CAACGCCCGAATGGATACGAGAAGGATATATCCCTGATTGGTTAATGGCT
GTTCGAGTTGTCATGATAATGGCTGCTGTGTTTGAGTTTATCGCCATAAT
GGCAGCAGTTTTCACACTTTTCATCAAGAAGTTTCATGGTTATATTACCA
GCATCTTTAGTTCCATTGCGTTTGCTTTACTGCTTGTTGGAGTCTATTTG
TATTCCGATCGAACGAATTTCGCCGTTGAGGAGTATGCTTGTGGTGTTGG
ATGGGGCATGGGATTTTTAGCGGTTATCTTTTCATTCTTGTCAGCTTTCA
TTGGACTTTGTACGTTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00010061-exon-sc0000102-1491911889:47194..47519 | TCONS_00010061-exon-sc0000102-1491911889:47194..47519 | Clytia hemisphaerica | exon |
| TCONS_00010061-exon-sc0000102-1510915933:47194..47519 | TCONS_00010061-exon-sc0000102-1510915933:47194..47519 | Clytia hemisphaerica | exon |
| TCONS_00010061-exon-sc0000102-1575043694:47194..47519 | TCONS_00010061-exon-sc0000102-1575043694:47194..47519 | Clytia hemisphaerica | exon |
| TCONS_00010061-exon-sc0000102-1491911889:47863..48627 | TCONS_00010061-exon-sc0000102-1491911889:47863..48627 | Clytia hemisphaerica | exon |
| TCONS_00010061-exon-sc0000102-1510915933:47863..48627 | TCONS_00010061-exon-sc0000102-1510915933:47863..48627 | Clytia hemisphaerica | exon |
| TCONS_00010061-exon-sc0000102-1575043694:47863..48627 | TCONS_00010061-exon-sc0000102-1575043694:47863..48627 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000102 | supercontig | sc0000102:47194..48627 + |
Blast
The following BLAST results are available for this feature:
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