TCONS_00010057 (transcript) - C. hemisphaerica

Overview
NameTCONS_00010057
Unique NameTCONS_00010057
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1431

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00010057 ID=TCONS_00010057|Name=TCONS_00010057|organism=Clytia hemisphaerica|type=transcript|length=1431bp
GAAGTGTTTCATATAAGTTTTGCAGAACTTTTGGCTGTCATTTTGTTGAG
AAAAGGAAACTTTTTGCTGATATTTTAATttgattaaaataaaatggtag
aAGAAAACTTTCCAATCATAGATATATCATCACTGGTACAAACTCAATGT
CAAGATGAAACCATTTTACAAGAAGCAGCCAATCAATTGATGGATGGTTT
TAGTAAATGgggatttatttatttgaaagGTCATCCTATTCCTGAAGAAT
CGATTGCAACATTATTCAAAGAAtctgaaaatttctttacacaACCTGTC
GATAAGAAACGAGAAGTAGAAATGGACGCAACAGATAGTGATTATATTAT
GGGGTATGTTCCATTCAAAATGGAAAGAATCGATCCTAGAAAACCCTTTG
ATCTCAAAGAAGCCTTTGATTACAAACACCATATCCGACAAGATATGAAA
CAAAAATTGCCACCGCAATTTACAAAAAGCCTCGAAAATTTCTTTGACGA
ATGTTATGATTTGTCATTGCTGCTGTTCAAATTACTCAATAAATCCTTGG
ATATTGAGGATGATCAATTTTTCCCAAATTGCCACCGAAAGTCTGGTTAT
TTTGGAAATGGGACCTTGTTAAGGTCTTTATATTATCCTGGTATAGATTC
TAAAGATATTCTTCCAGAGCAAAGTAGATGTGGAGTGCATGCAGATTATG
GAACACTAACTTTGTTGTTCCAAAACGCAGAGGGTTTAGAGGTTAAATCA
CCATCAGGGAATTTCATCAAAGCGAAATTGATCGAAGGAACAATTATAGT
GAATGCAGCTGATCTTTTAGAACGTTGGTCAAGTGGACGAAtcaaatcta
ctttacatcgtgTTTCCTTACCGAAGGATACAAACCAACCAAGACAATCA
GTTGCATTCTTTGTGATGCCTGACAACGAATGTATAGTGGAATGTTTAGA
TGGCTCCAATACTTACGAACCAATCACAGCTTTCGATCATATTGACAATA
TGTACAAAGCCACATTCAGAGATTGAAAATTAACAACAGACTTTGCACCC
ACATTCCTCTTGGTTTGTTTTCATGATTTACTGACCGAAATTAACGTTTG
TGTGGCATACTCTTTGTTGTCAAAATAATTAGAAGATATTAAGTAATTAA
AGTGGtgcatattcaatttttttaaatgttcttcTACACATCCATGCATG
GACACTTGGACACAATTCCACAacacaaaatttagttttttataCTTAAA
GCTTTggcatatttttgttttctcttatatttatattttgataaaattta
tattttgataaaaccttttttttttacttgtttttatatttctcatatat
atatttttttgattagGAATTCATACAAATCTtgagtaccttaagggaac
tcgccaaaattcgccaaaattagttcccgcc
Run BLAST on NCBI

transcript from alignment at sc0000102:39940..43304+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00010057 ID=TCONS_00010057|Name=TCONS_00010057|organism=Clytia hemisphaerica|type=transcript|length=3365bp|location=Sequence derived from alignment at sc0000102:39940..43304+ (Clytia hemisphaerica)
GAAGTGTTTCATATAAGTTTTGCAGAACTTTTGGCTGTCATTTTGTTGAG
AAAAGGAAACTTTTTGCTGATATTTTAATttgattaaaataaaatggtag
aAGAAAACTTTCCAATCATAGATATATCATCACTGGTACAAACTCAATGT
CAAGATGAAACCATTTTACAAGAAGCAGCCAATCAATTGATGGATGGTTT
TAGTAAATGgggatttatttatttgaaagGTCATCCTATTCCTGAAGAAT
CGATTGCAACATTATTCAAAGAAtctgaaaatttctttacacaACCTGTC
GATAAGAAACGAGAAGTAGAAATGGACGCAACAGATAGTGATTATATTAT
GGGGTATGTTCCATTCAAAATGGAAAGAATCGATCCTAGAAAACCCTTTG
ATCTCAAAGAAGCCTTTGATTACAAACACCATATCCGACAAGATATGAAA
CAAAAATTGCCACCGCAATTTACAAAAAGCCTCGAAAATTTCTTTGACGA
ATGTTATGATTTGTCATTGCTGCTGTTCAAATTACTCAATAAATCCTTGG
ATATTGAGGATGATCAATTTTTCCCAAATTGCCACCGAAAGTCTGGTTAT
TTTGGAAATGGGACCTTGTTAAGGTCTTTATATTATCCTGGTATAGATTC
TAAAGATATTCTTCCAGAGCAAAGTAGATGTGGAGTGCATGCAGATTATG
GAACACTAACTTTGTTGTTCCAAAACGCAGAGGGTTTAGAGGTAAAACTA
TTCAGTGTTCAAAGTtttcgagtctgctaaattgcgtgggttgcgtgggt
gcgtgggtcaatatttttgcgtgggttgATATTTTTGcatgggtcatttt
tttgcgtgggtgcgtgggtcaaaatattttttgcgtgggtcaattttttt
gcgtgggtcaattttttttgcgtgggtcaaattttttgcgtgggtcattt
tttttgcgtgggtaaaaaattttgcgtgggccatatttttttgcatgggt
cattattttttgcgtgggtcatattttttgcgtgggtcattattttttgc
gtgggtcaaagtttttgagtgggtcactattttttggtgattttttagct
aactcgatttttttaccaaattaaaactttcgagttagcttagacgtttt
ttttgtcaaatcttggtcaagttaaaattttcaagttatcttatacaaaa
atgtgttgtgtataaatctacgaaaactaaacaaaagcacacagttttta
tgtagtaacaccttgtggtttattttacatagctgcacttatttactata
acattatacagaatcaacacacacccgcctaatttttgtagacacacttc
aggatcacacttttgaattttagcatgctatatttcaagattccagtgtc
atggaaataaacactataactttaattttctcCTCCCTTTTCtattgctt
tgaaaaaaagtacagcgtctttatttcgtccaattttttaaattggcctt
taatgtacttaaatcaaagaaattacaagtgGNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCGGTCG
CCTAATGAATAtaacttttgtagaaaaattttcagattttgtcgcCATTT
GCTTTGTTCTTTAACACTCAAAGGAAACCCAAAAGATTAAAGCGTTGCTA
TAAGAAGCTTTAAAGCTTCTAAAAAgattctacacgtttttttatataag
aacaaactatataaaaacataaggcttcaaatccaaaaaactaagaacat
ccaaaggcttcgaaaattgttgacgttcttataaaaaaaacgtgtataaa
gcttcctcttataaaaagacagcTACAGCTATgcaacataaacaaaataa
ccaaaacgtgttatgtaaaacacatccaacattttggatgtgaccagttc
gaatttcaagggaaggtattttttcgaattacagagagaatttcgaccca
cgcaaaaattttgacccacgcaaaaaatatgacccacgcaaaaaaaattg
acccacgcaaaaaatattttgacccacgcaaaaaatttgacccacgcaaa
atttttgacccacgcaaaaaatattttgacccacgcacccacgcaaaaaa
ttgacccacgcaaaaatatcgacccacgcacccacgcaacccacgcaatt
tagcagactcaaagTTTTcccgtctcagacggatttccgtctcagcgagg
tacaaaaaaagacttttccgtctccaaattcaacaaaattctgcaaaaca
tGAATAATATGGCCAGATTTGTTGTTCAAAGTCCATTTCCGTCTGTGatg
aaaattttgctttgaccactgctATATTTATGATCATTTCTAACTTTTTT
ACTGGCTTATACATTTGTATTAGAAGGTCGTATAAGAAGTAAATAGTGTC
CTCTAGTGGTGTCAGCCAGGACTTGTCCATTTAAGTCTTTTTTTAACAAC
TTACTTTTAATTCTAGCTTTTAAAGGACTTTGATGCAATGATATAACTAA
AAAATTAGTGTCATCTTTCCCTCAGGTTAAATCACCATCAGGGAATTTCA
TCAAAGCGAAATTGATCGAAGGAACAATTATAGTGAATGCAGCTGATCTT
TTAGAACGTTGGTCAAGTGGACGAAtcaaatctactttacatcgtgTTTC
CTTACCGAAGGATACAAACCAACCAAGACAATCAGTTGCATTCTTTGTGA
TGCCTGACAACGAATGTATAGTGGAATGTTTAGATGGCTCCAATACTTAC
GAACCAATCACAGCTTTCGATCATATTGACAATATGTACAAAGCCACATT
CAGAGATTGAAAATTAACAACAGACTTTGCACCCACATTCCTCTTGGTTT
GTTTTCATGATTTACTGACCGAAATTAACGTTTGTGTGGCATACTCTTTG
TTGTCAAAATAATTAGAAGATATTAAGTAATTAAAGTGGtgcatattcaa
tttttttaaatgttcttcTACACATCCATGCATGGACACTTGGACACAAT
TCCACAacacaaaatttagttttttataCTTAAAGCTTTggcatattttt
gttttctcttatatttatattttgataaaatttatattttgataaaacct
tttttttttacttgtttttatatttctcatatatatatttttttgattag
GAATTCATACAAATCTtgagtaccttaagggaactcgccaaaattcgcca
aaattagttcccgcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005642XLOC_005642Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00010057-exon-sc0000102-1491911889:39940..40680TCONS_00010057-exon-sc0000102-1491911889:39940..40680Clytia hemisphaericaexon
TCONS_00010057-exon-sc0000102-1510915933:39940..40680TCONS_00010057-exon-sc0000102-1510915933:39940..40680Clytia hemisphaericaexon
TCONS_00010057-exon-sc0000102-1575043694:39940..40680TCONS_00010057-exon-sc0000102-1575043694:39940..40680Clytia hemisphaericaexon
TCONS_00010057-exon-sc0000102-1491911889:42615..43304TCONS_00010057-exon-sc0000102-1491911889:42615..43304Clytia hemisphaericaexon
TCONS_00010057-exon-sc0000102-1510915933:42615..43304TCONS_00010057-exon-sc0000102-1510915933:42615..43304Clytia hemisphaericaexon
TCONS_00010057-exon-sc0000102-1575043694:42615..43304TCONS_00010057-exon-sc0000102-1575043694:42615..43304Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000102supercontigsc0000102:39940..43304 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.3042	10.6495	5.04758	4.16057	4.79484	2.9055	9.80682	10.9058	5.34752	4.08952	4.31788	3.48131	1.68385	1.66114	2.96948	4.07698	2.96535	3.41046	0.40967	0.837375	1.6924	1.66175	10.7932	7.86062	1.12773	1.34221	2.22216	1.81409	5.81066	6.10114
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00010057 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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