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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00010016 ID=TCONS_00010016|Name=TCONS_00010016|organism=Clytia hemisphaerica|type=transcript|length=2987bpRun BLAST on NCBI transcript from alignment at sc0000101:186219..202778- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00010016 ID=TCONS_00010016|Name=TCONS_00010016|organism=Clytia hemisphaerica|type=transcript|length=16560bp|location=Sequence derived from alignment at sc0000101:186219..202778- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00010016 vs. Swiss-Prot (Human)
Match: PTPRA (Receptor-type tyrosine-protein phosphatase alpha OS=Homo sapiens GN=PTPRA PE=1 SV=2) HSP 1 Score: 428.328 bits (1100), Expect = 1.539e-134 Identity = 235/595 (39.50%), Postives = 351/595 (58.99%), Query Frame = 1
Query: 163 YKPIQLMDFSERCEELRKDSHHELSEEYKALHSGQLHDWSEAVIPEI-RTKNRYANIVAYNHSRVKLKTLNDI-NSNYVNASFIHGYRKPNTYIASQGPNQASMNDFWQMIWEQEVSVIVMATNLVEKNKKKCECYWPQKGSIAYGSIVVTVNTMDTYADFVIRSFTLQQ----NNNKEIRTLQQYHYLSWPDHGVPEFPSDILSLRHKIRKDHPVNMTHSPILVHCSAGVGRTGTFICIDNLLQLAAEENIVDVFNFVNFMRTRRIHMVQTEEQYMFIYKSLLESFTCGITEIDVSKFGNEYQRLLRPNQNGTTKNGFHLQFERLN--KVTNDLXXXXXXXXXXXXXVNKNRT-SILPRDTSRVFLRASIYEEHHGSNYINAIFVNGYKQKDAFIATQHPLESTIIDFWKMVFEKDVSTIVMLNALYEEDQ-AYETFWPSSEESLVLNEMQVVCLSEDRSNIKETRRFELSHKDNAEKTLHTTLFNYVKWPHDGAPQNPSDIIQLLSSIEATQSENPEKPIIVICSDGAGRSGTFIAISILMEQLKLEHSIDVFQTIKKIRSTRPEFVQNEVQYQFCYNMIKEYMDSFSTYSNF 1917
Y P+ + E D + EE+ AL + + EA E + KNRY NI+ Y+HSRV L + + +S+Y+NASFI+GY++ N +IA+QGP + ++NDFW+MIWEQ + IVM TNL E+ + KC YWP +G YG+I V+V + D+ +R F +QQ N K R + Q+H+ SWPD GVP P +L K++ +P I+VHCSAGVGRTGTF+ ID +L + E VDV+ FV+ +R +R MVQT+ QY+FIY++LLE + G TE++V+ Q++ GT+ NG +F++L K+ ND + N N+ KNR I+P + +RV + EE+ ++Y+NA F++GY+QKD++IA+Q PL TI DFW+M++E +IVML L E Q +WPS + LV V L ++ T R L K+ F++ WP G P + +I ++++++ Q ++ PI V CS GAGR+GTF A+S ++E++K E +DVFQT+K +R RP VQ QY+FCY +++EY+D+FS Y+NF
Sbjct: 218 YPPLPVDKLEEEINRRMADDNKLFREEFNALPACPIQATCEAASKEENKEKNRYVNILPYDHSRVHLTPVEGVPDSDYINASFINGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCWTYGNIRVSVEDVTVLVDYTVRKFCIQQVGDMTNRKPQRLITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNP--QYAGAIVVHCSAGVGRTGTFVVIDAMLDMMHTERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLEHYLYGDTELEVTSLETHLQKIYN-KIPGTSNNGLEEEFKKLTSIKIQND----KMRTGNLPANMKKNRVLQIIPYEFNRVIIPVKRGEEN--TDYVNASFIDGYRQKDSYIASQGPLLHTIEDFWRMIWEWKSCSIVMLTELEERGQEKCAQYWPS--DGLVSYGDITVELKKEEECESYTVRDLLVTNTRENKSRQIRQFHFHGWPEVGIPSDGKGMISIIAAVQKQQQQSGNHPITVHCSAGAGRTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQYEFCYKVVQEYIDAFSDYANF 801 The following BLAST results are available for this feature:
BLAST of TCONS_00010016 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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