TCONS_00009990 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009990
Unique NameTCONS_00009990
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2115

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009990 ID=TCONS_00009990|Name=TCONS_00009990|organism=Clytia hemisphaerica|type=transcript|length=2115bp
GGGTTGAAATGTTTTATCGCGTACTTCGAAACGGTCAACACAAATGAACA
CCGAATCCACCGAAGTGGTTCCTCCTTGGTCGTGGATAAAACAGAACTGA
TCGGAATGCCGTACCTATGGCAACTGGTGTTGAAATCTCCTTACGGAAAT
ATCGCCGAAGAAGCGACACAGTATCTCATCGATGTCTCTTTTTCTTGGCT
CTCCAATAAACTGAAGAAGGTGGATTCGTTCAGTATACACAAGAAGTTTA
TGGGTGAATGTTGTAAACGCTTGGAACATCTTTTATCACAATTGAAAGAG
AATGAAGATTGCTCACCTAAAGAAGGGAAAATCACACGCACGTTCAAAAA
ACCTCATCCTATCAAAGGGTCAAGTATTGAAAGATCAAAGGTTTTTCTAT
CAATCGAGCGTCTGCTACACCTTACCTGTAACTATATCATCACAGTTGAA
GACGGATACGCTCTACCGCGCGCCTTCCCTTCGCACGGCTCATGTTACCA
TGGCTACCCAATACAAATTCATATCACGTGTGAAAGCAACAAAACAGAGA
TTGACGTCATGAGTCATAGCAACGAGAGGTTGTCCGCTGTCCGACAAAAA
ATCGCTAACAAATTGGACTGTCCGGTTGAGGGATTACAAATATTAATGAA
CGATAAAACGCTTCTCTCGGACAAAGACCACAAATTGCTGCTACAACTTT
CGTTCGAGAAGAAACAGAATTTAACAGCCAAACTACTGGCTACCATCAAA
GCGACTTCGGGCGGCGCCACGGGAACTTTGTTATCCGCGTCTGCATCCAG
CAGTGCCTCAAATGACGTAAGTTGGTCTTAGTTCGCTATTTATCTTCATG
ACTACCTTTAAAGGGGGAAACGGTAAAAGTCGGGTAAATCTTTTGTCGGG
AGATACTTGCTGTCACTTGCCTGAAAATCTTGTCACTTTACCCAGGTAGT
ATGGATTTCTCTTCGACTTTTTCGGCTTCAACTTTTGAATGAAGCAAACA
ACAACCATTACAAATTCCTGTACCCCAATTCTCGATATTTATGACGTAAA
TAATGAGTTTTGGAGTTTTCAACTTCGACAATTTAACTGGTGGCGGACGC
TCGTTGTTTTTCATGTGTTTCCGTATTGATTGCGCCATGAATATCACGAA
CATCTTAATACTCACCTAAAGGTTTGATGGCCCTTCATAAAACAATTCCT
TAGCTGCTGTCTAAAAGCTGTTGAACTTTTTTGAAGCATGTTATTATGAT
ATTAGTTATTGTAATAAAGGCGATTTgtatattttccttaacaattTCAC
GAAAATACTTAAAAAGTACCTTACCCTCGTTCCATCATTCATAGATTTTT
GTGAAGTTcaagaatttttcctttttagtcCGTTTCACCTGTGAATAAGA
TGGATCGAGAGAAATGTCTCCCTGGATTCCTCTTGGCTGTGGAATACAGG
ATCTTCGACAAATTGTACACCCTGGCAGAGTTAGAAGAACCACAGATCAC
CTGTGTGCTGCGTAACCTTCTCCAACAGCTTCCGACGGACGGAGACGTTC
TTCAAGCAATTGATGTGTTCAGTTTTCAGAATCCGATGCTATGTTCACCG
GGTACGCGAGCTGGTTACACTACGTCATCGACTTCCGTCCTTGAAAACTA
TTTCAAATGTACGGCACCTAAGATGTCCACTTTCCGCGTGTTGTATAATT
TACAGGTGCTAAGCAGCAAATTGATGCCAGTCCTTGGTATCGATGCTCCA
AACGTGACGCAATCATTTCGTGAGAATTGGTTAAATGCAGGTGGCTTAAG
GCTCATCATGAATATCTTGTTACCAGACACGTTACCTAGCAACGCTGATT
ACGAGTTGAGACAGTCCTGTTATTACATCATTTTGCAGCTAGCAAGGTTT
CTTCTGTGTGGTGATGAAATAGACATGGAACCCAACTCCCCACCTTACCC
TGCGGTCGTGCGAACGTACGGGCAGACATCAGCGGACGACACACCCCTTC
TACAGCACGCCGTTTCGTTGAATACGACGGCAACGGATTCACAAGCTGAC
GTTTCCATGAATTCAACCTCCACGCCCATCAAAGTCGGGAATACAAGCTC
TATTTCTAATCAAAG
Run BLAST on NCBI

transcript from alignment at sc0000101:414566..419453+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009990 ID=TCONS_00009990|Name=TCONS_00009990|organism=Clytia hemisphaerica|type=transcript|length=4888bp|location=Sequence derived from alignment at sc0000101:414566..419453+ (Clytia hemisphaerica)
GGGTTGAAATGTTTTATCGCGTACTTCGAAACGGTCAACACAAATGAACA
CCGAATCCACCGAAGTGGTTCCTCCTTGGTCGTGGATAAAACAGAACTGA
TCGGAATGCCGTACCTATGGCAACTGGTGTTGAAATCTCCTTACGGAAAT
ATCGCCGAAGAAGCGACACAGTATCTCATCGATGTCTCTTTTTCTTGGCT
CTCCAATAAACTGAAGAAGGTTAAACCGTTTACTTTTCTCGGCTATGGTA
AAGCTTTTTCATGTTCggtaatagatcttatcggagtttttaatttttct
aaaaaagcgatgcattgtgggattgtttcgggagtattacaatagaattc
cctcgagaaattcctaagagatttctattgtaatacactggaaacaatcc
cacaatgcattgcttttttagaaaaatcaaaaactccgataagatctatt
acgtaattatccgccattatggaagccaAACATTCGAATCTGTAGAAGCA
CTCTCTTGCGCAAATTgaatgtttgcttccataattGTAGAAGTAATTTA
ATTTAACCAAACATGAGAAACCTCTATAAACTACTAAGCTGTTGATAAAA
ACAATTTCGCATATGCACCTCGGTATCTTCCAAAAGTAGCTTATTTTGAG
GTTATTTGATCATTTTGTTATCCCATCCATTCCCTATCCTAAATCTAGAC
TCACAAAAAAATATGCCGTCATACTTTTGGTGTGGCACTCGGTAGGTCTC
GTCGAGATCAGTTTGGGTTTTTCAAACTTCCAATCTGTTCCTCCCTGCAA
CAGGTGGATTCGTTCAGTATACACAAGAAGTTTATGGGTGAATGTTGTAA
ACGCTTGGAACATCTTTTATCACAATTGAAAGAGAATGAAGATTGCTCAC
CTAAAGAAGGGAAAATCACACGCACGTTCAAAAAACCTCATCCTATCAAA
GGGTCAAGTATTGAAAGGTACGTTTTTTTCATCCGTTCATTTGCCTGTTT
ACTCGTTGATCTATCCGTAATTTTATCCCCGAATCTGCTCATTGAAAGGT
AATGTTTTGGTTCCTTCGTTTGCTCGTTTATTTGTTTATCTATCCGTAAT
TCTACGAAAAATTCTCGAAACTGCTCGATGCTTTCCAATTCGATTTCCAA
GGGGAATGGGATTTTTATCGATGAAGGGAGCGTATGGAATggtagagcgt
cgtttacgaTAGAGTTTCTTGCTGACTGTGACTTTATGGAGTAATACTGG
AACTCATCGAACAGTAGAGCGCTGAATTAGTGTCAACTGTAATTTATTGA
AGTGTGTTTGTCTCTTCTCCTCTCCCTTCTATATTTAAATTTACAAGAAT
TATGTACACCAGTTTGCTGTGAtatgaattttcttttaaagtACAATAGT
CTCTTAAGTCGAAAATGTTTTCCTGTTCCCTCGCtgagttaacaatgcct
tatatgACTGAACAAACGCCTCCATAATTCGAAACTTCCtgttaactcga
acaaattgtCTTCCTTGTGCGGGTCCGATCTAAAGAGACTCAACTGTAAA
ATATTACTTATCTActtatcgcattttgaagtttttcccaaacccgtgac
gtcattgggtccctttacccctaatgttatcaacggtcaattcgcaaatt
ttgaaatttttgcgttcaacaggtaccttatgccccaagggtcccaaaaa
acaaaaaaacgtcaattttttccaagggaaagtgggtttttaaatttgcg
aaagattgacactgcaacgatTTCTTCtcaaaaaacgctaattttcatga
aattttcaaagttgaaacattccagaggctaaacacAGCGGAATAGCGGA
ATAATTATCTATCTCATTCCTTTCACTCCAGATCAAAGGTTTTTCTATCA
ATCGAGCGTCTGCTACACCTTACCTGTAACTATATCATCACAGTTGAAGA
CGGATACGCTCTACCGCGCGCCTTCCCTTCGCACGGCTCATGTTACCATG
GCTACCCAATACAAATTCATATCACGTGTGAAAGCAACAAAACAGAGATT
GACGTCATGAGTCATAGCAACGAGAGGTTGTCCGCTGTCCGACAAAAAAT
CGCTAACAAATTGGACTGTCCGGTTGAGGGATTACAAATATTAATGAACG
ATAAAACGGTaaatagaattcaaaattttctacaCCTCCCTGCACCTGCT
CGTAATGGTTTTATGATTTCTGAGAAcagtgttttgtttttaagaagttc
aactttttttatgagaCTGAAGTTTAAAGAATCATTAAAAAGATTATGAT
GTCACGGATAAGACTCGTCTACGCATGTCTTCCCGAACATCCGAACGATG
TGTGAACGCGCATGCTTTTTTTTAGGACTTTATTTTTGAGATATTGCCTT
TTAGAAGGTTCTGGAAAAAAGAAAAGCCCAATAGTTTTAATTATCCAACT
CCTAGGAATTCCAAAATAAGAACACTAAAGGGTGACTATTGAAATTGATT
TCTTTCAGCTTCTCTCGGACAAAGACCACAAATTGCTGCTACAACTTTCG
TTCGAGAAGAAACAGAATTTAACAGCCAAACTACTGGCTACCATCAAAGC
GACTTCGGGCGGCGCCACGGGAACTTTGTTATCCGCGTCTGCATCCAGCA
GTGCCTCAAATGACGTAAGTTGGTCTTAGTTCGCTATTTATCTTCATGAC
TACCTTTAAAGGGGGAAACGGTAAAAGTCGGGTAAATCTTTTGTCGGGAG
ATACTTGCTGTCACTTGCCTGAAAATCTTGTCACTTTACCCAGGTAGTAT
GGATTTCTCTTCGACTTTTTCGGCTTCAACTTTTGAATGAAGCAAACAAC
AACCATTACAAATTCCTGTACCCCAATTCTCGATATTTATGACGTAAATA
ATGAGTTTTGGAGTTTTCAACTTCGACAATTTAACTGGTGGCGGACGCTC
GTTGTTTTTCATGTGTTTCCGTATTGATTGCGCCATGAATATCACGAACA
TCTTAATACTCACCTAAAGGTTTGATGGCCCTTCATAAAACAATTCCTTA
GCTGCTGTCTAAAAGCTGTTGAACTTTTTTGAAGCATGTTATTATGATAT
TAGTTATTGTAATAAAGGCGATTTgtatattttccttaacaattTCACGA
AAATACTTAAAAAGTACCTTACCCTCGTTCCATCATTCATAGATTTTTGT
GAAGTTcaagaatttttcctttttagtcCGTTTCACCTGTGAATAAGATG
GATCGAGAGAAATGTCTCCCTGGATTCCTCTTGGCTGTGGAATACAGGAT
CTTCGACAAATTGTACACCCTGGCAGAGTTAGAAGAACCACAGATCACCT
GTGTGCTGCGTAACCTTCTCCAACAGCTTCCGACGGACGGAGACGTTCTT
CAAGCAATTGATGTGTTCAGTTTTCAGGTGAGCTTTTGGCCTCttcaaat
tcgaatgtttgctTTCATGATTCAGGTTTTACCTGAATTACGTTACTTTG
TCTAATCTTGAAAACGTCTATtgtgaaaaaattgagaaattaaaGTATCC
ATTTAAAACGATTTTCCCAAGAGAATGCGATTTTGTTCGAGTTTTGACCT
CCGGATTTAGGCAATTTTTATCATAGCGACTTAATCataaattttgtctt
tttaaccTGATCGAACTGAGTTTTAAAACTTATTGTCTCATCTTCCTTTC
AGAATCCGATGCTATGTTCACCGGGTACGCGAGCTGGTTACACTACGTCA
TCGACTTCCGTCCTTGAAAACTATTTCAAATGTACGGCACCTAAGATGTC
CACTTTCCGCGTGTTGTATAATTTACAGGTTAGTGTCTTTATATAAATTG
ATTTCggttaagtaaaaaaaaagagacAATTTAATGATCTATTAAAAATC
TGGTCTATTTAACTACGTTAAGTCCTTAGTATGAAACTAAGAACTTTACT
TCAAAGCTAATACCATTACTTAATTTTCTTTCCAGTTGATATAGCCTCAG
TCATTATATAGTCAATAGCCTTCGTTATTTAAACTTCAGGAGTTTAAGCG
CCAAACCTACACCTGTCCTGTATCACAATATGCTATAATATCAAACCCCT
TTGACATTTCAACAGGTGCTAAGCAGCAAATTGATGCCAGTCCTTGGTAT
CGATGCTCCAAACGTGACGCAATCATTTCGTGAGAATTGGTTAAATGCAG
GTGGCTTAAGGCTCATCATGAATATCTTGTTACCAGACACGTTACCTAGC
AACGCTGATTACGAGTTGAGACAGTCCTGTTATTACATCATTTTGCAGCT
AGCAAGGTTTGTGTGCCTAGTCACAACTTTAAGGAAAAAATACATACAGG
GAATTATTAGAAGAAGACAGCTCCTCAAATAAACGCTGCAGAGCTCttta
aatttttgagattttagggCTTGGTGGTTTTTAGAGGGCGGGGCAAGGAA
ATACGGTACAGGTATGCCTTTTTAATCATCGACTTGGGGCTCTCAAATAA
CTTATCGATTCCTGTTGGAAGCCTTGGTTGGTGGTTactcattttgaatg
aaaaaatagaCGCATCGATCATCTAAGATCGGCCAAGAATAATTTCACAG
AGAAAAATCTCCGCTTGGAATCAGAACTTTGTATTCGATTAATTCTAAac
tttttcctttcttctcCAGGTTTCTTCTGTGTGGTGATGAAATAGACATG
GAACCCAACTCCCCACCTTACCCTGCGGTCGTGCGAACGTACGGGCAGAC
ATCAGCGGACGACACACCCCTTCTACAGCACGCCGTTTCGTTGAATACGA
CGGCAACGGATTCACAAGCTGACGTTTCCATGAATTCAACCTCCACGCCC
ATCAAAGTCGGGAATACAAGCTCTATTTCTAATCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005605XLOC_005605Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009990-exon-sc0000101-1491911889:414566..414784TCONS_00009990-exon-sc0000101-1491911889:414566..414784Clytia hemisphaericaexon
TCONS_00009990-exon-sc0000101-1510915933:414566..414784TCONS_00009990-exon-sc0000101-1510915933:414566..414784Clytia hemisphaericaexon
TCONS_00009990-exon-sc0000101-1575043694:414566..414784TCONS_00009990-exon-sc0000101-1575043694:414566..414784Clytia hemisphaericaexon
TCONS_00009990-exon-sc0000101-1491911889:415369..415532TCONS_00009990-exon-sc0000101-1491911889:415369..415532Clytia hemisphaericaexon
TCONS_00009990-exon-sc0000101-1510915933:415369..415532TCONS_00009990-exon-sc0000101-1510915933:415369..415532Clytia hemisphaericaexon
TCONS_00009990-exon-sc0000101-1575043694:415369..415532TCONS_00009990-exon-sc0000101-1575043694:415369..415532Clytia hemisphaericaexon
TCONS_00009990-exon-sc0000101-1491911889:416447..416723TCONS_00009990-exon-sc0000101-1491911889:416447..416723Clytia hemisphaericaexon
TCONS_00009990-exon-sc0000101-1510915933:416447..416723TCONS_00009990-exon-sc0000101-1510915933:416447..416723Clytia hemisphaericaexon
TCONS_00009990-exon-sc0000101-1575043694:416447..416723TCONS_00009990-exon-sc0000101-1575043694:416447..416723Clytia hemisphaericaexon
TCONS_00009990-exon-sc0000101-1491911889:417074..417992TCONS_00009990-exon-sc0000101-1491911889:417074..417992Clytia hemisphaericaexon
TCONS_00009990-exon-sc0000101-1510915933:417074..417992TCONS_00009990-exon-sc0000101-1510915933:417074..417992Clytia hemisphaericaexon
TCONS_00009990-exon-sc0000101-1575043694:417074..417992TCONS_00009990-exon-sc0000101-1575043694:417074..417992Clytia hemisphaericaexon
TCONS_00009990-exon-sc0000101-1491911889:418268..418393TCONS_00009990-exon-sc0000101-1491911889:418268..418393Clytia hemisphaericaexon
TCONS_00009990-exon-sc0000101-1510915933:418268..418393TCONS_00009990-exon-sc0000101-1510915933:418268..418393Clytia hemisphaericaexon
TCONS_00009990-exon-sc0000101-1575043694:418268..418393TCONS_00009990-exon-sc0000101-1575043694:418268..418393Clytia hemisphaericaexon
TCONS_00009990-exon-sc0000101-1491911889:418681..418871TCONS_00009990-exon-sc0000101-1491911889:418681..418871Clytia hemisphaericaexon
TCONS_00009990-exon-sc0000101-1510915933:418681..418871TCONS_00009990-exon-sc0000101-1510915933:418681..418871Clytia hemisphaericaexon
TCONS_00009990-exon-sc0000101-1575043694:418681..418871TCONS_00009990-exon-sc0000101-1575043694:418681..418871Clytia hemisphaericaexon
TCONS_00009990-exon-sc0000101-1491911889:419235..419453TCONS_00009990-exon-sc0000101-1491911889:419235..419453Clytia hemisphaericaexon
TCONS_00009990-exon-sc0000101-1510915933:419235..419453TCONS_00009990-exon-sc0000101-1510915933:419235..419453Clytia hemisphaericaexon
TCONS_00009990-exon-sc0000101-1575043694:419235..419453TCONS_00009990-exon-sc0000101-1575043694:419235..419453Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000101supercontigsc0000101:414566..419453 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0496039	0.0380533	0.790834	0.655464	0	0	0	0	0	0.0511976	0	0.036627	0.0363529	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.0784099	0	0
Blast
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BLAST of TCONS_00009990 vs. Swiss-Prot (Human)
Match: UBP24 (Ubiquitin carboxyl-terminal hydrolase 24 OS=Homo sapiens GN=USP24 PE=1 SV=3)

HSP 1 Score: 181.03 bits (458), Expect = 6.857e-47
Identity = 105/252 (41.67%), Postives = 148/252 (58.73%), Query Frame = 1 
Query:    1 GLKCFIAYFETVNTNEHRIHRSGSSLVVDKTELIGMPYLWQLVLKSPYGNIAEEATQYLIDVSFSWLSNKLKKVDSFSIHKKFMGECCKRLEHLLSQLKENEDCSPK-EGKITRTFK----KPHPIKGSSIE---RSKVFLSIERLLHLTCNYIITVEDGYALPRAFPSHGSCYHGYPIQIHITCESNKTEIDVMSHSNERLSAVRQKIANKLDCPVEGLQILMNDKTLLSDKDHKLLLQLSFEKKQNLTAK 732
            G   F  +FE VN  +HR+ R G+ L V+K ELIGM ++W++ ++SP   IA EA Q +I+ S+  L+ +LKK DS S+HKKF+ +C  RLE   S L       P     +TR  K       P   +S++   RS   + IERLL L   Y+IT+ED Y++PR    HG+ +HG+ + +++T ES K    V +HSNE + +VR KIA +L  PV+ +QI  ND  L  +KD KLL QL F  +Q LT K
Sbjct:  788 GFNLFKTFFENVNLCDHRLKRQGAQLYVEKLELIGMDFIWKIAMESPDEEIANEAIQLIINYSYINLNPRLKK-DSVSLHKKFIADCYTRLEAASSALG-----GPTLTHAVTRATKMLTATAMPTVATSVQSPYRSTKLVIIERLLLLAERYVITIEDFYSVPRTILPHGASFHGHLLTLNVTYESTKDTFTVEAHSNETIGSVRWKIAKQLCSPVDNIQIFTNDSLLTVNKDQKLLHQLGFSDEQILTVK 1033

HSP 2 Score: 149.058 bits (375), Expect = 8.632e-37
Identity = 86/185 (46.49%), Postives = 117/185 (63.24%), Query Frame = 2 
Query: 1400 MDREKCLPGFLLAVEYRIFDKLYTLAELEEPQITCVLRNLLQQLPTDGDVLQAIDVFS-------------FQNPMLCSPGTRAGYTTSSTSVLENYFKCTAPKMSTFRVLYNLQVLSSKLMPVLGID-APNVTQSFRENWLNAGGLRLIMNILLPDTLPSNADYELRQSCYYIILQLARFLLCG 1912
            M++EK LPG ++A+   +FD LY LA LEEP+IT  +R LL  +PTD  + +A+D                 Q+    S  ++  +  S++S+LE+ F+  AP MSTFRVLYNL+VLSSKLMP    D A +  +SF EN+L AGGL L++N++  D++PS  DYE RQ  Y I LQLARFLL G
Sbjct: 1065 MEQEKSLPGVVMALVCNVFDMLYQLANLEEPRITLRVRKLLLLIPTDPAIQEALDQLDSLGRKKTLLSESSSQSSKSPSLSSKQQHQPSASSILESLFRSFAPGMSTFRVLYNLEVLSSKLMPTADDDMARSCAKSFCENFLKAGGLSLVVNVMQRDSIPSEVDYETRQGVYSICLQLARFLLVG 1249
The following BLAST results are available for this feature:
BLAST of TCONS_00009990 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBP246.857e-4741.67Ubiquitin carboxyl-terminal hydrolase 24 OS=Homo s... [more]
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