TCONS_00009964 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009964
Unique NameTCONS_00009964
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length453

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009964 ID=TCONS_00009964|Name=TCONS_00009964|organism=Clytia hemisphaerica|type=transcript|length=453bp
AACCatatcaacaacaacaatatgGATGGATCAGTGGTGGTTTATTTCCA
GAACAATCAGGAATTTTAGTCAGGGATGGTGCAGAATCACCGAACCCAAG
TCCAACCGAAAGTGCTTCAATACCAAGAGACTTAGGAGCTCAATCATGAG
ATTATTATAGTAGACAGGATTCACCGCCACAACAGTCACCTTCAAGACCA
CCAAAGTCTTTTTCACCAACTGAAAAAATGGAACTTTGTGAGTATTGTTT
TCGAGAATTCCCCAAGGGAGCAGTTTTATTTGACCATATGATGAAATGTG
ACAAAAGATATCAGAGGGACAACAGATGATTTTGTAATCATTCAattcaa
tacacgttttttcttttattagaacccagtttataagaacattgaggctg
aaattcgtcgaaaaattaagaacatcgtaagaacatgcccagcctcagtt
tgg
Run BLAST on NCBI

transcript from alignment at sc0000100:544145..544597

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009964 ID=TCONS_00009964|Name=TCONS_00009964|organism=Clytia hemisphaerica|type=transcript|length=453bp|location=Sequence derived from alignment at sc0000100:544145..544597 (Clytia hemisphaerica)
ccaaactgaggctgggcatgttcttacgatgttcttaatttttcgacgaa
tttcagcctcaatgttcttataaactgggttctaataaaagaaaaaacgt
gtattgaatTGAATGATTACAAAATCATCTGTTGTCCCTCTGATATCTTT
TGTCACATTTCATCATATGGTCAAATAAAACTGCTCCCTTGGGGAATTCT
CGAAAACAATACTCACAAAGTTCCATTTTTTCAGTTGGTGAAAAAGACTT
TGGTGGTCTTGAAGGTGACTGTTGTGGCGGTGAATCCTGTCTACTATAAT
AATCTCATGATTGAGCTCCTAAGTCTCTTGGTATTGAAGCACTTTCGGTT
GGACTTGGGTTCGGTGATTCTGCACCATCCCTGACTAAAATTCCTGATTG
TTCTGGAAATAAACCACCACTGATCCATCcatattgttgttgttgatatG
GTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005594XLOC_005594Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009964-exon-sc0000100-1491911889:544145..544597TCONS_00009964-exon-sc0000100-1491911889:544145..544597Clytia hemisphaericaexon
TCONS_00009964-exon-sc0000100-1510915933:544145..544597TCONS_00009964-exon-sc0000100-1510915933:544145..544597Clytia hemisphaericaexon
TCONS_00009964-exon-sc0000100-1575043694:544145..544597TCONS_00009964-exon-sc0000100-1575043694:544145..544597Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000100supercontigsc0000100:544145..544597 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.5807	8.78387	10.1733	11.0671	16.0434	6.49139	8.74881	7.342	2.35515	3.70958	2.86516	2.09403	3.49189	3.3697	3.18111	2.81759	2.52616	2.77537	8.88699	4.31439	4.16078	5.54433	6.52637	5.85804	0	0	8.61435	9.70844	7.60865	9.0783
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009964 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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