TCONS_00009959 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009959
Unique NameTCONS_00009959
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length251

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009959 ID=TCONS_00009959|Name=TCONS_00009959|organism=Clytia hemisphaerica|type=transcript|length=251bp
gtCAAGTTTTGATATGTCAAGATTTGCCACTGACAATGGTCACTGGTGCT
GAGAGCTGAAGAAAATCATTTCCACACCCAGCAACATTCATTATAAATTC
TTTcgaatcgaatacaatcaaatttcagtttACTTTCAATCGTATGTCAA
TTTACATTCTACAATTCAATTTATGTCACATTTTCAAACAAGCGATCACA
AACCACGTCGAACCGCCAATAAAAACAATAACAAACAAACAGTTCTCATT
T
Run BLAST on NCBI

transcript from alignment at sc0000100:408654..408904

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009959 ID=TCONS_00009959|Name=TCONS_00009959|organism=Clytia hemisphaerica|type=transcript|length=251bp|location=Sequence derived from alignment at sc0000100:408654..408904 (Clytia hemisphaerica)
AAATGAGAACTGTTTGTTTGTTATTGTTTTTATTGGCGGTTCGACGTGGT
TTGTGATCGCTTGTTTGAAAATGTGACATAAATTGAATTGTAGAATGTAA
ATTGACATACGATTGAAAGTaaactgaaatttgattgtattcgattcgAA
AGAATTTATAATGAATGTTGCTGGGTGTGGAAATGATTTTCTTCAGCTCT
CAGCACCAGTGACCATTGTCAGTGGCAAATCTTGACATATCAAAACTTGa
c
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005589XLOC_005589Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009959-exon-sc0000100-1491911889:408654..408904TCONS_00009959-exon-sc0000100-1491911889:408654..408904Clytia hemisphaericaexon
TCONS_00009959-exon-sc0000100-1510915933:408654..408904TCONS_00009959-exon-sc0000100-1510915933:408654..408904Clytia hemisphaericaexon
TCONS_00009959-exon-sc0000100-1575043694:408654..408904TCONS_00009959-exon-sc0000100-1575043694:408654..408904Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000100supercontigsc0000100:408654..408904 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.07148	0	2.13946	0	1.8625	0.259691	0.416694	1.02049	0	0	0	0	2.4007	0	0.3026	1.13297	0	2.4065	0.343548	0.26624	2.13524	0	0	4.72985	4.00352	0	0	0.578879	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009959 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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