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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009918 ID=TCONS_00009918|Name=TCONS_00009918|organism=Clytia hemisphaerica|type=transcript|length=2195bp
TACCATTTTATTCACTGTATTGTACtacaaatttttggtttttgtttatA
CCTGGACTACTTAGTACAGCTAATTTTGATTGAGGAGTTTGAGCGGGGTA
TATATTATGGCTTCTACTCAAACCAACAGCAATGAACTTGAGCAAATTTT
ACAGATGAAAGAAAGAGAAATAAAAGATCTTAATATTCAACTTCAATCAC
TTCAAGAGTATGTAAAGGATTCTGAAAAAATTGTTGCATTTAAAGAAAGG
ATGATTAAAGACATGCCCAAAAACCCTGCGATACAATTCTATGATCCGGT
GTTAAAACGTACAATTCAAagattatcaaaagaaaatcaatcatATAAag
acattttaaatgaaaaatataaatctAAAGAAGCTGCTGATATTACCTTG
GAAATCAAAGAGGTTAGAAAAGAGAATGAACATCTACGTGAACAGTTAGA
TTCCAAATTTAGAGACAATCAAAGGCTTCAACAATCTTTAAACTCCGAAG
ACAAAAAAAATGATAACTTGAAAAAACTAACTGATAAGTGTAGTATTTTA
CAGAATGAAAACCGAATAATAAGATCCACCCTTTTGTTACAAGACCAATC
TAATGAATACCTCAAAAAGTGTGTGGATTCACAACgtgatgaatttttga
aaatatttctgcaAATAAGTTCTGACGAGCAAGGTCAAACATTTATTGAT
GCCATTAAAAATCTTAATTCTTCACAAACAAAATTACCAATGGGACTTTT
GACACCATTAAGTAGAGACCAGTCGACAGATACCAAAGAGATTGAAGGAG
TTGAAGCTTTACGTGGAGCCATAGCTGATCAATTAAGAATCCCGAAGGGA
CCATTATTAAATAAAGGTGGAGCAGATTCTGACTCTGCAATCGCCAGTAT
GAGTGATGAAATACAATCATTGAACAAAATGCTACGCGACTCAACAGAGG
AAAATGAGTCTCTAAAGACAAAAATCGACGAagtcaactttgaaaatgag
acTTTAAAGAAAGAGAGGCAAAATCAACAAAGCAACAGTGAACAATTTAT
TGATGAACTTCTAAAAAGAACACATGTAATAGAAGGGGAATTAACAGCAG
CACGATGCACAGTTGAAATACGTGAAAAAGAAGCCAAAGATTTCTTCACT
GACATTGAAAAACACAAGactgaaaacaaacaattaaAAGAAGAACTGAg
actaatgaaaacaaaagagaaGCAACTCTTTGATTACGTTTTACAAGCTC
AAAGAAGAGATAATCCACCCCCAATACCACCTGCTTCAAGGCAGTTATCT
ACGCCTGTTGAACCatatcaacaacaacaatatgGATGGATCAGTGGTGG
TATATTTCCAGAACAATCAGGAATTTTAGTGAGGGATGGTGCAGAATCAC
CGAGCCCAAGTCCAACCAAAAGTGCTTCAATACCAAGAGACTTAGGAGCT
CAATCTAGAGATTATTATAGTAGACAGGATTCACCGCCACAACAGTCACC
TTCAAGACCACCAAAGTCTTTTTCACCAACTGAAAAAATGGAGCTTTGTG
AGTACTGTTTTCGAGAATTCCCCAAGGGAGCAGTTTTATTTGACCATATG
ATGAAATGTGACAAAAGATATCAGAGGGATAACAGATGATTTTGTAATCA
TTCAAAAAATTcaacattattttttttataaatgtttccTATAAATTTGT
ACATAGTAAATTTGTCcataatttttgttttacttttagTGCATTGGTTG
AAAATGAAACTAGCATCATTCTTTACCAAACCTAGTTATTCAAAGAGATT
ACAAGATTAAACTTTTTATTCTACTAAGGGACATGTTTGATATTATAACA
GCATGATTTTCCTTTTATAGATATAGACAAGTCATGTCAATTATGATAAA
TTACACACCAATTATTGTTCAGTCAGGCTGATTTAATCCTTTTTTTGAGG
GAAATGTCAGGGAAGTTTCTTATTTGTTTGTAATGTAATGAGTCATTCGG
GGCATTTTGAGTCTTTAACTACACTTTTTTGTCTTATGAGAATTGATACA
CTTTTTTGTGAGAATAACTTCTTTGAGAAGACCAGTATACCAGTGTGATA
GCTTGCATACAAGCACAAAATACAAATCCCGTCCCTCAAaccttgtctgt
acacaaacccaatatctacggctaatttcaaaattcattgccgta Run BLAST on NCBI protein sequence of TCONS_00009918-protein >TCONS_00009918-protein ID=TCONS_00009918-protein|Name=TCONS_00009918-protein|organism=Clytia hemisphaerica|type=polypeptide|length=510bp
MASTQTNSNELEQILQMKEREIKDLNIQLQSLQEYVKDSEKIVAFKERMI
KDMPKNPAIQFYDPVLKRTIQRLSKENQSYKDILNEKYKSKEAADITLEI
KEVRKENEHLREQLDSKFRDNQRLQQSLNSEDKKNDNLKKLTDKCSILQN
ENRIIRSTLLLQDQSNEYLKKCVDSQRDEFLKIFLQISSDEQGQTFIDAI
KNLNSSQTKLPMGLLTPLSRDQSTDTKEIEGVEALRGAIADQLRIPKGPL
LNKGGADSDSAIASMSDEIQSLNKMLRDSTEENESLKTKIDEVNFENETL
KKERQNQQSNSEQFIDELLKRTHVIEGELTAARCTVEIREKEAKDFFTDI
EKHKTENKQLKEELRLMKTKEKQLFDYVLQAQRRDNPPPIPPASRQLSTP
VEPYQQQQYGWISGGIFPEQSGILVRDGAESPSPSPTKSASIPRDLGAQS
RDYYSRQDSPPQQSPSRPPKSFSPTEKMELCEYCFREFPKGAVLFDHMMK
CDKRYQRDNR Run BLAST on NCBI transcript from alignment at sc0000100:524749..527522+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009918 ID=TCONS_00009918|Name=TCONS_00009918|organism=Clytia hemisphaerica|type=transcript|length=2774bp|location=Sequence derived from alignment at sc0000100:524749..527522+ (Clytia hemisphaerica)
TACCATTTTATTCACTGTATTGTACtacaaatttttggtttttgtttatA
CCTGGACTACTTAGTACAGCTAATTTTGATTGAGGAGTTTGAGCGGGGTA
TATATTATGGCTTCTACTCAAACCAACAGCAATGAACTTGAGCAAATTTT
ACAGATGAAAGAAAGAGAAATAAAAGATCTTAATATTCAACTTCAATCAC
TTCAAGAGTATGTAAAGGATTCTGAAAAAATTGTTGCATTTAAAGAAAGG
ATGATTAAAGACATGCCCAAAAACCCTGCGATACAATTCTATGATCCGGT
GTTAAAACGTACAATTCAAagattatcaaaagaaaatcaatcatATAAag
acattttaaatgaaaaatataaatctAAAGAAGCTGCTGATATTACCTTG
GAAATCAAAGAGGTTAGAAAAGAGAATGAACATCTACGTGAACAGTTAGA
TTCCAAATTTAGAGACAATCAAAGGCTTCAACAATCTTTAAACTCCGAAG
ACAAAAAAAATGATAACTTGAAAAAACTAACTGATAAGTGTAGTATTTTA
CAGAATGAAAACCGAATAATAAGATCCACCCTTTTGTTACAAGACCAATC
TAATGAATACCTCAAAAAGTGTGTGGATTCACAACgtgatgaatttttga
aaatatttctgcaAATAAGTTCTGACGAGCAAGGTCAAACATTTATTGAT
GCCATTAAAAATCTTAATTCTTCACAAACAAAATTACCAATGGGACTTTT
GACACCATTAAGTAGAGACCAGTCGACAGATACCAAAGAGATTGAAGGAG
TTGAAGCTTTACGTGGAGCCATAGCTGATCAATTAAGAATCCCGAAGGGA
CCATTATTAAATAAAGGTGGAGCAGATTCTGACTCTGCAATCGCCAGTAT
GAGTGATGAAATACAATCATTGAACAAAATGCTACGCGACTCAACAGAGG
AAAATGAGTCTCTAAAGACAAAAATCGACGAagtcaactttgaaaatgag
acTTTAAAGAAAGAGAGGCAAAATCAACAAAGCAACAGTGAACAATTTAT
TGATGAACTTCTAAAAAGAACACATGTAATAGAAGGGGAATTAACAGCAG
CACGATGCACAGTTAGTATTGTTTTATTTCAATAGACTTTATCAGAGtct
tttatttttctgaaaaagcgatgcattgtgggattgtttcgagagggaat
tctattgaaacaatcccacactgcattgcttttttagaaaaatcaaaaac
tccgataaggtctattcttaatttttccttttaacTGTTTTATGAATGGT
AATAGGGTAGAAATGAAGTGGGACAAGCAATTTTATACAAAGGGACAGTT
CTTTATCAATTGTTTAGtgttataaaactttttttaaagggtACATATTG
TATAATTAAATTATCTCAATTTTCCAGGTTGAAATACGTGAAAAAGAAGC
CAAAGATTTCTTCACTGACATTGAAAAACACAAGactgaaaacaaacaat
taaAAGAAGAACTGAgactaatgaaaacaaaagagaaGCAACTCTTTGAT
TACGTTTTACAAGCTCAAAGAAGAGATAATCCACCCCCAATACCACCTGC
TTCAAGGCAGTTATCTACGGTAAGTTTAGTGGTTTCTAAAAACTTTTTAT
AGTTAAATTTACCTTTGGTTTATCTATTATGAATCTTCTAGAAATGTTTG
ATAGTATTCCTGCGCCATCTAATTTTACTtagcttttaaaaataaaagat
ttaacATTTTAGGAACTCCTTTTTGAGATTATATATATCTAGTTGTTGCC
AACAAGTTTTTTTGAGTTAGTTTCATTTTTTCAGGAACATGAAATTTTTA
AGACAATAATTTAATGAATCACATTTTTTCAGCCTGTTGAACCatatcaa
caacaacaatatgGATGGATCAGTGGTGGTATATTTCCAGAACAATCAGG
AATTTTAGTGAGGGATGGTGCAGAATCACCGAGCCCAAGTCCAACCAAAA
GTGCTTCAATACCAAGAGACTTAGGAGCTCAATCTAGAGATTATTATAGT
AGACAGGATTCACCGCCACAACAGTCACCTTCAAGACCACCAAAGTCTTT
TTCACCAACTGAAAAAATGGAGCTTTGTGAGTACTGTTTTCGAGAATTCC
CCAAGGGAGCAGTTTTATTTGACCATATGATGAAATGTGACAAAAGATAT
CAGAGGGATAACAGATGATTTTGTAATCATTCAAAAAATTcaacattatt
ttttttataaatgtttccTATAAATTTGTACATAGTAAATTTGTCcataa
tttttgttttacttttagTGCATTGGTTGAAAATGAAACTAGCATCATTC
TTTACCAAACCTAGTTATTCAAAGAGATTACAAGATTAAACTTTTTATTC
TACTAAGGGACATGTTTGATATTATAACAGCATGATTTTCCTTTTATAGA
TATAGACAAGTCATGTCAATTATGATAAATTACACACCAATTATTGTTCA
GTCAGGCTGATTTAATCCTTTTTTTGAGGGAAATGTCAGGGAAGTTTCTT
ATTTGTTTGTAATGTAATGAGTCATTCGGGGCATTTTGAGTCTTTAACTA
CACTTTTTTGTCTTATGAGAATTGATACACTTTTTTGTGAGAATAACTTC
TTTGAGAAGACCAGTATACCAGTGTGATAGCTTGCATACAAGCACAAAAT
ACAAATCCCGTCCCTCAAaccttgtctgtacacaaacccaatatctacgg
ctaatttcaaaattcattgccgta Coding sequence (CDS) from alignment at sc0000100:524749..527522+ >TCONS_00009918 ID=TCONS_00009918|Name=TCONS_00009918|organism=Clytia hemisphaerica|type=CDS|length=4599bp|location=Sequence derived from alignment at sc0000100:524749..527522+ (Clytia hemisphaerica)
ATGGCTTCTACTCAAACCAACAGCAATGAACTTGAGCAAATTTTACAGAT
GAAAGAAAGAGAAATAAAAGATCTTAATATTCAACTTCAATCACTTCAAG
AGTATGTAAAGGATTCTGAAAAAATTGTTGCATTTAAAGAAAGGATGATT
AAAGACATGCCCAAAAACCCTGCGATACAATTCTATGATCCGGTGTTAAA
ACGTACAATTCAAagattatcaaaagaaaatcaatcatATAAagacattt
taaatgaaaaatataaatctAAAGAAGCTGCTGATATTACCTTGGAAATC
AAAGAGGTTAGAAAAGAGAATGAACATCTACGTGAACAGTTAGATTCCAA
ATTTAGAGACAATCAAAGGCTTCAACAATCTTTAAACTCCGAAGACAAAA
AAAATGATAACTTGAAAAAACTAACTGATAAGTGTAGTATTTTACAGAAT
GAAAACCGAATAATAAGATCCACCCTTTTGTTACAAGACCAATCTAATGA
ATACCTCAAAAAGTGTGTGGATTCACAACgtgatgaatttttgaaaatat
ttctgcaAATAAGTTCTGACGAGCAAGGTCAAACATTTATTGATGCCATT
AAAAATCTTAATTCTTCACAAACAAAATTACCAATGGGACTTTTGACACC
ATTAAGTAGAGACCAGTCGACAGATACCAAAGAGATTGAAGGAGTTGAAG
CTTTACGTGGAGCCATAGCTGATCAATTAAGAATCCCGAAGGGACCATTA
TTAAATAAAGGTGGAGCAGATTCTGACTCTGCAATCGCCAGTATGAGTGA
TGAAATACAATCATTGAACAAAATGCTACGCGACTCAACAGAGGAAAATG
AGTCTCTAAAGACAAAAATCGACGAagtcaactttgaaaatgagacTTTA
AAGAAAGAGAGGCAAAATCAACAAAGCAACAGTGAACAATTTATTGATGA
ACTTCTAAAAAGAACACATGTAATAGAAGGGGAATTAACAGCAGCACGAT
GCACAGTTGAAATACGTGAAAAAGAAGCCAAAGATTTCTTCACTGACATT
GAAAAACACAAGactgaaaacaaacaattaaAAGAAGAACTGAgactaat
gaaaacaaaagagaaGCAACTCTTTGATTACGTTTTACAAGCTCAAAGAA
GAGATAATCCACCCCCAATACCACCTGCTTCAAGGCAGTTATCTACGCCT
GTTGAACCatatcaacaacaacaatatgGATGGATCAGTGGTGGTATATT
TCCAGAACAATCAGGAATTTTAGTGAGGGATGGTGCAGAATCACCGAGCC
CAAGTCCAACCAAAAGTGCTTCAATACCAAGAGACTTAGGAGCTCAATCT
AGAGATTATTATAGTAGACAGGATTCACCGCCACAACAGTCACCTTCAAG
ACCACCAAAGTCTTTTTCACCAACTGAAAAAATGGAGCTTTGTGAGTACT
GTTTTCGAGAATTCCCCAAGGGAGCAGTTTTATTTGACCATATGATGAAA
TGTGACAAAAGATATCAGAGGGATAACAGATGAATGGCTTCTACTCAAAC
CAACAGCAATGAACTTGAGCAAATTTTACAGATGAAAGAAAGAGAAATAA
AAGATCTTAATATTCAACTTCAATCACTTCAAGAGTATGTAAAGGATTCT
GAAAAAATTGTTGCATTTAAAGAAAGGATGATTAAAGACATGCCCAAAAA
CCCTGCGATACAATTCTATGATCCGGTGTTAAAACGTACAATTCAAagat
tatcaaaagaaaatcaatcatATAAagacattttaaatgaaaaatataaa
tctAAAGAAGCTGCTGATATTACCTTGGAAATCAAAGAGGTTAGAAAAGA
GAATGAACATCTACGTGAACAGTTAGATTCCAAATTTAGAGACAATCAAA
GGCTTCAACAATCTTTAAACTCCGAAGACAAAAAAAATGATAACTTGAAA
AAACTAACTGATAAGTGTAGTATTTTACAGAATGAAAACCGAATAATAAG
ATCCACCCTTTTGTTACAAGACCAATCTAATGAATACCTCAAAAAGTGTG
TGGATTCACAACgtgatgaatttttgaaaatatttctgcaAATAAGTTCT
GACGAGCAAGGTCAAACATTTATTGATGCCATTAAAAATCTTAATTCTTC
ACAAACAAAATTACCAATGGGACTTTTGACACCATTAAGTAGAGACCAGT
CGACAGATACCAAAGAGATTGAAGGAGTTGAAGCTTTACGTGGAGCCATA
GCTGATCAATTAAGAATCCCGAAGGGACCATTATTAAATAAAGGTGGAGC
AGATTCTGACTCTGCAATCGCCAGTATGAGTGATGAAATACAATCATTGA
ACAAAATGCTACGCGACTCAACAGAGGAAAATGAGTCTCTAAAGACAAAA
ATCGACGAagtcaactttgaaaatgagacTTTAAAGAAAGAGAGGCAAAA
TCAACAAAGCAACAGTGAACAATTTATTGATGAACTTCTAAAAAGAACAC
ATGTAATAGAAGGGGAATTAACAGCAGCACGATGCACAGTTGAAATACGT
GAAAAAGAAGCCAAAGATTTCTTCACTGACATTGAAAAACACAAGactga
aaacaaacaattaaAAGAAGAACTGAgactaatgaaaacaaaagagaaGC
AACTCTTTGATTACGTTTTACAAGCTCAAAGAAGAGATAATCCACCCCCA
ATACCACCTGCTTCAAGGCAGTTATCTACGCCTGTTGAACCatatcaaca
acaacaatatgGATGGATCAGTGGTGGTATATTTCCAGAACAATCAGGAA
TTTTAGTGAGGGATGGTGCAGAATCACCGAGCCCAAGTCCAACCAAAAGT
GCTTCAATACCAAGAGACTTAGGAGCTCAATCTAGAGATTATTATAGTAG
ACAGGATTCACCGCCACAACAGTCACCTTCAAGACCACCAAAGTCTTTTT
CACCAACTGAAAAAATGGAGCTTTGTGAGTACTGTTTTCGAGAATTCCCC
AAGGGAGCAGTTTTATTTGACCATATGATGAAATGTGACAAAAGATATCA
GAGGGATAACAGATGAATGGCTTCTACTCAAACCAACAGCAATGAACTTG
AGCAAATTTTACAGATGAAAGAAAGAGAAATAAAAGATCTTAATATTCAA
CTTCAATCACTTCAAGAGTATGTAAAGGATTCTGAAAAAATTGTTGCATT
TAAAGAAAGGATGATTAAAGACATGCCCAAAAACCCTGCGATACAATTCT
ATGATCCGGTGTTAAAACGTACAATTCAAagattatcaaaagaaaatcaa
tcatATAAagacattttaaatgaaaaatataaatctAAAGAAGCTGCTGA
TATTACCTTGGAAATCAAAGAGGTTAGAAAAGAGAATGAACATCTACGTG
AACAGTTAGATTCCAAATTTAGAGACAATCAAAGGCTTCAACAATCTTTA
AACTCCGAAGACAAAAAAAATGATAACTTGAAAAAACTAACTGATAAGTG
TAGTATTTTACAGAATGAAAACCGAATAATAAGATCCACCCTTTTGTTAC
AAGACCAATCTAATGAATACCTCAAAAAGTGTGTGGATTCACAACgtgat
gaatttttgaaaatatttctgcaAATAAGTTCTGACGAGCAAGGTCAAAC
ATTTATTGATGCCATTAAAAATCTTAATTCTTCACAAACAAAATTACCAA
TGGGACTTTTGACACCATTAAGTAGAGACCAGTCGACAGATACCAAAGAG
ATTGAAGGAGTTGAAGCTTTACGTGGAGCCATAGCTGATCAATTAAGAAT
CCCGAAGGGACCATTATTAAATAAAGGTGGAGCAGATTCTGACTCTGCAA
TCGCCAGTATGAGTGATGAAATACAATCATTGAACAAAATGCTACGCGAC
TCAACAGAGGAAAATGAGTCTCTAAAGACAAAAATCGACGAagtcaactt
tgaaaatgagacTTTAAAGAAAGAGAGGCAAAATCAACAAAGCAACAGTG
AACAATTTATTGATGAACTTCTAAAAAGAACACATGTAATAGAAGGGGAA
TTAACAGCAGCACGATGCACAGTTGAAATACGTGAAAAAGAAGCCAAAGA
TTTCTTCACTGACATTGAAAAACACAAGactgaaaacaaacaattaaAAG
AAGAACTGAgactaatgaaaacaaaagagaaGCAACTCTTTGATTACGTT
TTACAAGCTCAAAGAAGAGATAATCCACCCCCAATACCACCTGCTTCAAG
GCAGTTATCTACGCCTGTTGAACCatatcaacaacaacaatatgGATGGA
TCAGTGGTGGTATATTTCCAGAACAATCAGGAATTTTAGTGAGGGATGGT
GCAGAATCACCGAGCCCAAGTCCAACCAAAAGTGCTTCAATACCAAGAGA
CTTAGGAGCTCAATCTAGAGATTATTATAGTAGACAGGATTCACCGCCAC
AACAGTCACCTTCAAGACCACCAAAGTCTTTTTCACCAACTGAAAAAATG
GAGCTTTGTGAGTACTGTTTTCGAGAATTCCCCAAGGGAGCAGTTTTATT
TGACCATATGATGAAATGTGACAAAAGATATCAGAGGGATAACAGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009918-exon-sc0000100-1491911889:524749..525859 | TCONS_00009918-exon-sc0000100-1491911889:524749..525859 | Clytia hemisphaerica | exon |
| TCONS_00009918-exon-sc0000100-1510915933:524749..525859 | TCONS_00009918-exon-sc0000100-1510915933:524749..525859 | Clytia hemisphaerica | exon |
| TCONS_00009918-exon-sc0000100-1575043694:524749..525859 | TCONS_00009918-exon-sc0000100-1575043694:524749..525859 | Clytia hemisphaerica | exon |
| TCONS_00009918-exon-sc0000100-1491911889:526176..526367 | TCONS_00009918-exon-sc0000100-1491911889:526176..526367 | Clytia hemisphaerica | exon |
| TCONS_00009918-exon-sc0000100-1510915933:526176..526367 | TCONS_00009918-exon-sc0000100-1510915933:526176..526367 | Clytia hemisphaerica | exon |
| TCONS_00009918-exon-sc0000100-1575043694:526176..526367 | TCONS_00009918-exon-sc0000100-1575043694:526176..526367 | Clytia hemisphaerica | exon |
| TCONS_00009918-exon-sc0000100-1491911889:526631..527522 | TCONS_00009918-exon-sc0000100-1491911889:526631..527522 | Clytia hemisphaerica | exon |
| TCONS_00009918-exon-sc0000100-1510915933:526631..527522 | TCONS_00009918-exon-sc0000100-1510915933:526631..527522 | Clytia hemisphaerica | exon |
| TCONS_00009918-exon-sc0000100-1575043694:526631..527522 | TCONS_00009918-exon-sc0000100-1575043694:526631..527522 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000100 | supercontig | sc0000100:524749..527522 + |
Blast
The following BLAST results are available for this feature:
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