TCONS_00009837 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009837
Unique NameTCONS_00009837
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1562

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009837 ID=TCONS_00009837|Name=TCONS_00009837|organism=Clytia hemisphaerica|type=transcript|length=1562bp
CCAACATCTTTTCCAGACCCGATCCATTGAAACTAATCGAACCAAATTTT
TATCGAACTAATCAAACCCGGTCAAACCTAATCGAACGATTAGAGTTTGA
TTAATCGTAATAATTGAACTGTCAGGGTTTTCTTATAAAATTAGTTTGAC
TAAAAATCAGTACGGTTAGTGTCCAACCACACAGCAAATTTTTATCTTCT
TCCTATTTCTTCCCTTTTCACCACTTACATTCACAATTTCGTTAGCACAA
TCTTCTTCATCACTGCTGTCACTACTATCAGAGCTTGAATACAATCTTGG
GATATTTAATTCCTGGTCATTTGCATCATCATCATATTCAATGTCACTCA
TATTATGGTCATCATCATTGTCATTTAAAAGACCGCCATGATCATCATTA
GGCCCAGGAACTTCATCATCAATAGTAATATCCTGGTTCATTTCATCATT
TGGATCTGCTCGAATACCTATGTTTTTGTATACCTCATTATGGTGCCTTA
TAACATGTCTGTAATACGAATTATAACGTTTGAATATAGAAGGGCAGCCT
CCAACATTACACTTGATTGAGAAGTTCAGCTGGTTAGAATGTACCAAGTT
GATATGATTCATATAACGTCGCAATGTGCGTGCTTTAAATGTATTACAAA
GATTACAGCTGTATGTTTCCATATTTCAGtataaagttcaaaattttaga
GTCAATAAAAACCTGTGGGGTAATGACGACAAggtggccattttagtttt
tgaCGCGCGCAGCGTTTGTGGTTTTAGGCTATAGATATTAGATGTTTCAA
AGCAAATCATATTTGTTCAAGATCTGGAAGAAGCTCTTTTATAAATTTTG
GTGTAATGTAAACAttgaaaaatgatcaaaatcaaTCTATGAAACATTAT
AGTTCAAATTTGGGATCTACTAATTTTCGCTGGTGATGATTATCAAATAC
TTTCTGAAGGTTTATGTCTGACTTGTTTTCTTATGACCATATTTGGTAAT
TAAATTACCCAAGACCCTTTGCGGAGTCGTCAATTTCGCGGCAAACATCA
ACTTGCCCGTTTGCTTCCAAGAACTTCAACGACAACGTACACGTGTGGAG
AGAATTTACCATCATCATTGATCGTTGTAAATGATGGAATTGCTAGACAA
AATAATAGACCAATACCCGGAGATTGGGGAATTCCTAATTGAATCAAATT
ACTCCAGCCATAGTATTCTGATGTTAGAATACAAGGAACTCAAAACACTT
TTGGTTGACTTTGATGCAAAGTTGAGATGTAAAGTCTGGAGACTAATTGA
CgaCCATTCTAAATCATGTGATACACCACCTATAAGTGTTAAGTCTGACA
ACTCTCCGCTGAGTCGAGAAGTTTCAAATATCACAAGCTCTAAGCGAAAA
TTATCAGACAAAGAGAATCAATCTCCACCCATGAACAAAGAATTCCATTT
CAACACAGCAAATCAAGGCCCTTCCACCAAACAAGACTTGCCGAGCTCCA
GCCGAGACATGCCGAGCTCCAGCCAAGACATGCCAAGCTCAAGCCGTGAA
TTGCTAAGCCNN
Run BLAST on NCBI

transcript from alignment at sc0000099:40527..42971-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009837 ID=TCONS_00009837|Name=TCONS_00009837|organism=Clytia hemisphaerica|type=transcript|length=2445bp|location=Sequence derived from alignment at sc0000099:40527..42971- (Clytia hemisphaerica)
CCAACATCTTTTCCAGACCCGATCCATTGAAACTAATCGAACCAAATTTT
TATCGAACTAATCAAACCCGGTCAAACCTAATCGAACGATTAGAGTTTGA
TTAATCGTAATAATTGAACTGTCAGGGTTTTCTTATAAAATTAGTTTGAC
TAAAAATCAGTACGGTTAGTGTCCAACCACACAGCAAATTTTTATCTTCT
TCCTATTTCTTCCCTTTTCACCACTTACATTCACAATTTCGTTAGCACAA
TCTTCTTCATCACTGCTGTCACTACTATCAGAGCTTGAATACAATCTTGG
GATATTTAATTCCTGGTCATTTGCATCATCATCATATTCAATGTCACTCA
TATTATGGTCATCATCATTGTCATTTAAAAGACCGCCATGATCATCATTA
GGCCCAGGAACTTCATCATCAATAGTAATATCCTGGTTCATTTCATCATT
TGGATCTGCTCGAATACCTATGTTTTTGTATACCTCATTATGGTGCCTTA
TAACATGTCTGTAATACGAATTATAACGTTTGAATATAGAAGGGCAGCCT
CCAACATTACACTTGATTGAGAAGTTCAGCTGGTTAGAATGTACCAAGTT
GATATGATTCATATAACGTCGCAATGTGCGTGCTTTAAATGTATTACAAA
GATTACAGCTGTATGTTTCCATATTTCAGTATAAAGTTCAAAATTTTAGA
GTCAATAAAAACCTGTGGGGTAATGACGACAAGGTGGCCATTTTAGTTTT
TGACGCGCGCAGCGTTTGTGGTTTTAGGCTATAGATATTAGATGTTTCAA
AGCAAATCATATTTGTTCAAGATCTGGAAGAAGCTCTTTTATAAATTTTG
GTGTAATGTAAACATTGAAAAATGATCAAAATCAATCTATGAAACATTAT
AGTTCAAATTTGGGATCTACTAATTTTCGCTGGTGATGATTATCAAATAC
TTTCTGAAGGTTTATGTCTGACTTGTTTTCTTATGACCATATTTGGTAAT
TAAATTACCCAAGACCCTTTGCGGAGTCGTCAATTTCGCGGCAAACATCA
ACTTGCCCGTTTGCTTCCAAGAACTTCAACGACAACGTACACGTGTGGAG
AGAATTTACCATCATCATTGATCGTTGTAAATGATGGAATTGCTAGACAA
AATAATAGACCAATACCCGGAGATTGGGGAATTCCTAATTGGTGAGTATC
TATATACATTTTTTGGCTGACATCACTTCCATTCATTTATCTTAAATAAA
ATAAATCAAGACTTGAACAGACAGATAAATGAAATGTGTGTTTTCCTGCA
AAAGGCAGCCTGATTGAATATGTATTCTTCTTCTGAAATTTATAAAAAAT
TTTTCACAGGCAATTCTCTCTTTCTAGAGTGGGTGGGTACTACTCTCGGG
TACCTGATAAGCCCCCCGCTAATTAATTTTTCGAAAGTTTTCCCCTGCTT
ATTAATATTTGGGAAAATATTTTTGATAGTTCTCTATTTTGCCCTAATTC
TTCTGTATAAGCCTCCTTTTCAAAAATTTTCCACCCAGGAATTCAAATTC
CAACCCCCCCCCCGCTTAAGTTTTGAGATTTTTTCTGCCCACCCCGCTTA
TTCCAAACCCCCTGTTTAGAAGCTACCCGAGAGTACCCTTCCAGACAAAA
TTATAAGATAAAATCAAGGCCACAGTCACAAATAACTTGCGTTTGTGTCA
TTTACAGCCCAAAATTGTGAGTCTGTTGGTCTGTTGTTTGATTTTAATTT
TGATTAAGTTATAATCATAGGGCAGCACTAACCCAAAATTTTACCTTACT
TGCTTACTTGAGTTCTAAACTTAAATCCTCTAGATAAAAAATTCTGAATA
CAGTTTATGTTTGTTCTTACGTTTAGAATCAAATTACTCCAGCCATAGTA
TTCTGATGTTAGAATACAAGGAACTCAAAACACTTTTGGTTGACTTTGAT
GCAAAGTTGAGATGTAAAGTCTGGAGACTAATTGACGTAAGAGATAATTG
TTTATTCCACCGTTTATTCAATAATGAAAGGCCAGGCCTAGTCATGAGGC
AAACCACGCTTCCGTGCAATAATAGCCTGATTTTTTCCCTAAAAATGCCA
AATCTTCACTGATTTGCATTTTGTTACATAGTTATTTGTTCTTCTGACCA
TTCATCTTAAAGAATACAATTTTCATATTTTCAGGACCATTCTAAATCAT
GTGATACACCACCTATAAGTGTTAAGTCTGACAACTCTCCGCTGAGTCGA
GAAGTTTCAAATATCACAAGCTCTAAGCGAAAATTATCAGACAAAGAGAA
TCAATCTCCACCCATGAACAAAGAATTCCATTTCAACACAGCAAATCAAG
GCCCTTCCACCAAACAAGACTTGCCGAGCTCCAGCCGAGACATGCCGAGC
TCCAGCCAAGACATGCCAAGCTCAAGCCGTGAATTGCTAAGCCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005502XLOC_005502Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009837-exon-sc0000099-1575043694:41781..42971TCONS_00009837-exon-sc0000099-1575043694:41781..42971Clytia hemisphaericaexon
TCONS_00009837-exon-sc0000099-1575043694:40986..41095TCONS_00009837-exon-sc0000099-1575043694:40986..41095Clytia hemisphaericaexon
TCONS_00009837-exon-sc0000099-1575043694:40527..40787TCONS_00009837-exon-sc0000099-1575043694:40527..40787Clytia hemisphaericaexon
TCONS_00009837-exon-sc0000099-1510915933:41781..42971TCONS_00009837-exon-sc0000099-1510915933:41781..42971Clytia hemisphaericaexon
TCONS_00009837-exon-sc0000099-1510915933:40986..41095TCONS_00009837-exon-sc0000099-1510915933:40986..41095Clytia hemisphaericaexon
TCONS_00009837-exon-sc0000099-1510915933:40527..40787TCONS_00009837-exon-sc0000099-1510915933:40527..40787Clytia hemisphaericaexon
TCONS_00009837-exon-sc0000099-1491911889:41781..42971TCONS_00009837-exon-sc0000099-1491911889:41781..42971Clytia hemisphaericaexon
TCONS_00009837-exon-sc0000099-1491911889:40986..41095TCONS_00009837-exon-sc0000099-1491911889:40986..41095Clytia hemisphaericaexon
TCONS_00009837-exon-sc0000099-1491911889:40527..40787TCONS_00009837-exon-sc0000099-1491911889:40527..40787Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000099supercontigsc0000099:40527..42971 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.264516	0.376212	0.176402	0.32141	3.93648	3.41433	2.19819	2.78258	1.28763	2.3161	0.930924	1.88292	1.23155	0.901355	0.393505	0.536261	0.80069	0.500951	0.314225	0.633764	0.744995	0.454878	0.583494	0.608648	1.97203	1.75361	0.25107	0.337075	0.364668	0.341294
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009837 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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