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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009836 ID=TCONS_00009836|Name=TCONS_00009836|organism=Clytia hemisphaerica|type=transcript|length=825bp
CTTTTACATTGTCAATCATAATATTGTATTCCCCGTTCTTTGGAAACATT
ACACAGCAGTGATTTAATGTTACAGATGGAAAGTTGTCTTTATATGGACT
TTAAATGTCGTTTGTGtttcaaaatcatatttttggaGTCACCAAAACTT
CATTTCTGAGTGGTACTAAACTAAAAATATCTATTAAGTCTATTGTAAAT
TCCAATTTGGGACATGCTGGATAGCACCAAATCTGCAGGATTTAATCCAA
TCACATTAATGCATGTCTTTTTGAACATTACCATTATAGAAAACATTGTA
TGAAAAGATGAGAAAATGTGGTTATAATCGAACGCAAATGGAAAGAAAAG
TGGTGGAAGCAAACGAGATGGAAGAAAAGATGAACGACTATGTACAACTA
CATTCTCGcccaaagaaaataaaatttatgctAACAGAATCGGAGTTAGC
tcaatcaaaagaaatcaaagaagaaaataacAACGTACACCAAAATGTTT
CTCCTGCCATTTCCCAGCCCAATGAAGAACTTACAACAGAAGAAAGCTTT
CAGGAGGAAGCAGTTCCAGAAATATCCAAATTTTTGTCCCTATTGGACAA
AGAAATGAAGAAATCGAAACCCAATTTAACAGTTGTGAACTTGTATCttg
ataaaacattttcaacacgACGAGAACTATTACATGAGAAAGGTCAAGAA
GAATACATAAAGATGTATCCTTGTTTTAACAGCCCTGTTATGGTAAATGT
AATTTTTATTTCTGTATTATTAGCCAGAGGCAAAtacacttttgaaaatt
ttttacatgATAAAGAGTGTCCCAG Run BLAST on NCBI protein sequence of TCONS_00009836-protein >TCONS_00009836-protein ID=TCONS_00009836-protein|Name=TCONS_00009836-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
MRKCGYNRTQMERKVVEANEMEEKMNDYVQLHSRPKKIKFMLTESELAQS
KEIKEENNNVHQNVSPAISQPNEELTTEESFQEEAVPEISKFLSLLDKEM
KKSKPNLTVVNLYLDKTFSTRRELLHEKGQEEYIKMYPCFNSPVMVNVIF
ISVLLARGKYTFENFLHDKECP Run BLAST on NCBI transcript from alignment at sc0000099:36835..38233- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009836 ID=TCONS_00009836|Name=TCONS_00009836|organism=Clytia hemisphaerica|type=transcript|length=1399bp|location=Sequence derived from alignment at sc0000099:36835..38233- (Clytia hemisphaerica)
CTTTTACATTGTCAATCATAATATTGTATTCCCCGTTCTTTGGAAACATT
ACACAGCAGTGATTTAATGTTACAGATGGAAAGTTGTCTTTATATGGACT
TTAAATGTCGTTTGTGTTTCAAAATCATATTTTTGGAGTCACCAAAACTT
CATTTCTGAGTGGTACTAAACTAAAAATATCTATTAAGTCTATTGTAAAT
TCCAATTTGGGACATGCTGGATAGCACCAAATCTGCAGGATTTAATCCAA
TCACATTAATGCATGTCTTTTTGAACATTACCATTATAGAAAACATTGTA
TGAAAAGATGAGAAAATGTGGTTATAATCGAACGCAAATGGAAAGAAAAG
TGGTGGAAGCAAACGAGATGGAAGAAAAGATGAACGACTATGTACAACTA
CATTCTCGCCCAAAGAAAATAAAATTTATGCTAACAGGTAAATTAACATA
GGAACACACTTAAGTTTTTTATTTTATAAAATGTTGTTGTCTCAAAGGGG
GCATTGAAATTTAAAACTCATGCCTTCCCTAAATTCCTTACACCATTCAA
AAGCTCTCAAGGCTTTTTTAGCAAATATGGCGGCACTGAAACAAAATTAT
TTGCCAGTAAGCACTCACTTTTGAATATTCTTCTACCTAGTGTGGAATCT
TTTTGAAAGTTTAACACAGAGTCTGAATTTTCTCCTTGGGGAGAGAGCAG
GATTTTTTGATACACTTGCATAAATAGTAATCCCTAAAGCTCTCTCCTAA
ACATCTTGATTTAGAATCGGAGTTAGCTCAATCAAAAGAAATCAAAGAAG
AAAATAACAACGTACACCAAAATGTTTCTCCTGCCATTTCCCAGCCCAAT
GAAGAACTTACAACAGAAGAAAGCTTTCAGGAGGAAGCAGGTAAGTTCAA
ATACTTAGTTCAGAACATATGGTAGCTAGCTACCTTGCCCCATTCAAATT
TTAAGAAAATAAAAGTACACTTTCTTATAAGCATACAGTTAATGTGGCAG
CTCAATATTCTTAGGTAAGAGTTGATCTTGAGTATCAAATTATGCTTAAC
TTTATGAAAAAACCTCCCCCTAAGCTCAGGGGGGTGCTTCTCTGTCCGCC
ATCCGTCAAATTAATAAATTAGACCAATTTTTTTCAGTTCCAGAAATATC
CAAATTTTTGTCCCTATTGGACAAAGAAATGAAGAAATCGAAACCCAATT
TAACAGTTGTGAACTTGTATCTTGATAAAACATTTTCAACACGACGAGAA
CTATTACATGAGAAAGGTCAAGAAGAATACATAAAGATGTATCCTTGTTT
TAACAGCCCTGTTATGGTAAATGTAATTTTTATTTCTGTATTATTAGCCA
GAGGCAAATACACTTTTGAAAATTTTTTACATGATAAAGAGTGTCCCAG Coding sequence (CDS) from alignment at sc0000099:36835..38233- >TCONS_00009836 ID=TCONS_00009836|Name=TCONS_00009836|organism=Clytia hemisphaerica|type=CDS|length=1548bp|location=Sequence derived from alignment at sc0000099:36835..38233- (Clytia hemisphaerica)
TTCCAGAAATATCCAAATTTTTGTCCCTATTGGACAAAGAAATGAAGAAA
TCGAAACCCAATTTAACAGTTGTGAACTTGTATCTTGATAAAACATTTTC
AACACGACGAGAACTATTACATGAGAAAGGTCAAGAAGAATACATAAAGA
TGTATCCTTGTTTTAACAGCCCTGTTATGGTAAATGTAATTTTTATTTCT
GTATTATTAGCCAGAGGCAAATACACTTTTGAAAATTTTTTACATGATAA
AGAGTGTCCCAATCGGAGTTAGCTCAATCAAAAGAAATCAAAGAAGAAAA
TAACAACGTACACCAAAATGTTTCTCCTGCCATTTCCCAGCCCAATGAAG
AACTTACAACAGAAGAAAGCTTTCAGGAGGAAGCAGATGAGAAAATGTGG
TTATAATCGAACGCAAATGGAAAGAAAAGTGGTGGAAGCAAACGAGATGG
AAGAAAAGATGAACGACTATGTACAACTACATTCTCGCCCAAAGAAAATA
AAATTTATGCTAACAGTTCCAGAAATATCCAAATTTTTGTCCCTATTGGA
CAAAGAAATGAAGAAATCGAAACCCAATTTAACAGTTGTGAACTTGTATC
TTGATAAAACATTTTCAACACGACGAGAACTATTACATGAGAAAGGTCAA
GAAGAATACATAAAGATGTATCCTTGTTTTAACAGCCCTGTTATGGTAAA
TGTAATTTTTATTTCTGTATTATTAGCCAGAGGCAAATACACTTTTGAAA
ATTTTTTACATGATAAAGAGTGTCCCAATCGGAGTTAGCTCAATCAAAAG
AAATCAAAGAAGAAAATAACAACGTACACCAAAATGTTTCTCCTGCCATT
TCCCAGCCCAATGAAGAACTTACAACAGAAGAAAGCTTTCAGGAGGAAGC
AGATGAGAAAATGTGGTTATAATCGAACGCAAATGGAAAGAAAAGTGGTG
GAAGCAAACGAGATGGAAGAAAAGATGAACGACTATGTACAACTACATTC
TCGCCCAAAGAAAATAAAATTTATGCTAACAGTTCCAGAAATATCCAAAT
TTTTGTCCCTATTGGACAAAGAAATGAAGAAATCGAAACCCAATTTAACA
GTTGTGAACTTGTATCTTGATAAAACATTTTCAACACGACGAGAACTATT
ACATGAGAAAGGTCAAGAAGAATACATAAAGATGTATCCTTGTTTTAACA
GCCCTGTTATGGTAAATGTAATTTTTATTTCTGTATTATTAGCCAGAGGC
AAATACACTTTTGAAAATTTTTTACATGATAAAGAGTGTCCCAATCGGAG
TTAGCTCAATCAAAAGAAATCAAAGAAGAAAATAACAACGTACACCAAAA
TGTTTCTCCTGCCATTTCCCAGCCCAATGAAGAACTTACAACAGAAGAAA
GCTTTCAGGAGGAAGCAGATGAGAAAATGTGGTTATAATCGAACGCAAAT
GGAAAGAAAAGTGGTGGAAGCAAACGAGATGGAAGAAAAGATGAACGACT
ATGTACAACTACATTCTCGCCCAAAGAAAATAAAATTTATGCTAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009836-exon-sc0000099-1575043694:37797..38233 | TCONS_00009836-exon-sc0000099-1575043694:37797..38233 | Clytia hemisphaerica | exon |
| TCONS_00009836-exon-sc0000099-1575043694:37344..37469 | TCONS_00009836-exon-sc0000099-1575043694:37344..37469 | Clytia hemisphaerica | exon |
| TCONS_00009836-exon-sc0000099-1575043694:36835..37096 | TCONS_00009836-exon-sc0000099-1575043694:36835..37096 | Clytia hemisphaerica | exon |
| TCONS_00009836-exon-sc0000099-1510915933:37797..38233 | TCONS_00009836-exon-sc0000099-1510915933:37797..38233 | Clytia hemisphaerica | exon |
| TCONS_00009836-exon-sc0000099-1510915933:37344..37469 | TCONS_00009836-exon-sc0000099-1510915933:37344..37469 | Clytia hemisphaerica | exon |
| TCONS_00009836-exon-sc0000099-1510915933:36835..37096 | TCONS_00009836-exon-sc0000099-1510915933:36835..37096 | Clytia hemisphaerica | exon |
| TCONS_00009836-exon-sc0000099-1491911889:37797..38233 | TCONS_00009836-exon-sc0000099-1491911889:37797..38233 | Clytia hemisphaerica | exon |
| TCONS_00009836-exon-sc0000099-1491911889:37344..37469 | TCONS_00009836-exon-sc0000099-1491911889:37344..37469 | Clytia hemisphaerica | exon |
| TCONS_00009836-exon-sc0000099-1491911889:36835..37096 | TCONS_00009836-exon-sc0000099-1491911889:36835..37096 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000099 | supercontig | sc0000099:36835..38233 - |
Blast
The following BLAST results are available for this feature:
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