TCONS_00009835 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009835
Unique NameTCONS_00009835
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1971

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009835 ID=TCONS_00009835|Name=TCONS_00009835|organism=Clytia hemisphaerica|type=transcript|length=1971bp
CTTGATTACCGCCCGggtgtttattaaattttttgatttttaagaggggc
gtttattcgaggggggcgtttaaaagaagggggtgtttattaAATAACTT
GTATccagggtcctttttttaaGGAAATGGGGACCTTATTTTGCCTTTTC
GTCATACTTTGAGTACAAATCTGTTTATTTAGAGATGTAGAAATAGGTCA
AAGTTACTTTGAATactaaaataatataattttaaacGTTTATCTAAGTT
TTTCTTCATATGATACTTGGTCAAAGCTACTagtttcgaataaacgcccc
tcctagagGGGAGGCGTTTTCCTTtcaggaggggcgtttattcgaggggg
cgttaaaaagaagggggcgtttattcgaagtaatacggtatgaTAAAACa
acttttatttgaaatgttttgacTTCCTTCAAGTTTTCGTACCATCATTT
CTCTACATTGCATTATTTACctttcacatttttttcttcacaaaattgaa
tttgaaaactcaatttgaaattgAGTTTTTGTTACTGAATAATGGTGGTA
AAAAAGTGCAGACAGTACAGTGAACAAAAGAAAtgacgtcacttaaacaa
tagatgtacgcttttgctaaaccccctttCCCCCTTCACTGcatacgtac
tatatggatggcccatataccttaagggaatcaTTCTTTGAGGGAACCAC
TTTTTGCAGTGTCAATCTGAGATTTTTTGTGGAActtaaatttttagaat
tttagataaccattttaatgtttttaactaAAAGATGCTGATTGTGATAA
GATaaccaaaattttttctcattttgaaagttttgctgGAACTTGACTTT
GCAGTTTGGGGTCAAATCTACAAAAAGTGCAAAATTTAGTTAGTTCCCTG
AAGGTTATTCCATAGTTCCCTGAAGGTTATtctcaaaatttgatttcttt
ttctttcactttttatttAGATGGAAAGCTGATGCATCTGATGAGCAact
taaataaaatttttggaaagctcaagAAAAAGAGTGTAAAGACTCAGCAA
ATCTTTGTTGAACTTGCTGACAATGAAGATCCCGAGGAAAAAATGTCAAC
GTGCAAAATCTCAACTTCGTGTCCCATCCTTCTCatagagaaaaataaaa
ttcatcttCTACTTCACAAGAAATTGTTGTTCAGCACTGAACGTAAATGC
ATTATTGAAGCCTTTGTCGCGTATATCGCGTCTTACTATCTGGTCAACAT
GGGTTACCCATTATCTTTGGAAATTGGCTTGTCAGTCCTACAACTCATCC
TTTTCAAAGATGATAACATCAGGAGCGAAATAAAGGAGGACGTGCTCAAA
ATCCACAAAGAGtaccaaaaattttgaacagACTACTTTAGGCTTCAGGT
ATTATGTATTTTAAACCTTTTTGATACTTAAGCCCCTGCACTATTAGTTT
TTGGTTAGGTTAGGTTACTATACCGTATTTCTTCTAATAAGCGCCGCGgc
gcttattaaattttcttgatttaagGTGCGGCGCTTAATAAAGGGCGGCG
CTTAATAGAGGGCGgcacttatttcaaaatttgaaaatttagtttttcaa
aGGGCTTCAATAGTTTCACGAAGTTGGTTAAATGTATATAGATGGTGGGT
TCTTTATACTTTAAAGCTCAGACGTTGTTGTAATGACATAGAATAATGAT
AGATTTATGATTTTAGAGTTCGCTATTGAAGGTATAAGTttgaatgtctt
cattttcaagccATTTTCTAATAAGCGCCGCATTTAGAGGTGCGGCGCTT
ATTAGAGGGCGGCGCTTATATCGAAATTTAGATTTAAGGTGCGGCGCTTA
TTGGAGGAAATACGGTACtctatttttggacctacctggaggtcctataa
attaacctttgtccgtccgtccgttcgttcgttaccagcttttctcgaga
ttggctcatttgTTTTTTTNN
Run BLAST on NCBI

transcript from alignment at sc0000099:32242..36098-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009835 ID=TCONS_00009835|Name=TCONS_00009835|organism=Clytia hemisphaerica|type=transcript|length=3857bp|location=Sequence derived from alignment at sc0000099:32242..36098- (Clytia hemisphaerica)
CTTGATTACCGCCCGGGTGTTTATTAAATTTTTTGATTTTTAAGAGGGGC
GTTTATTCGAGGGGGGCGTTTAAAAGAAGGGGGTGTTTATTAAATAACTT
GTATCCAGGGTCCTTTTTTTAAGGAAATGGGGACCTTATTTTGCCTTTTC
GTCATACTTTGAGTACAAATCTGTTTATTTAGAGATGTAGAAATAGGTCA
AAGTTACTTTGAATACTAAAATAATATAATTTTAAACGTTTATCTAAGTT
TTTCTTCATATGATACTTGGTCAAAGCTACTAGTTTCGAATAAACGCCCC
TCCTAGAGGGGAGGCGTTTTCCTTTCAGGAGGGGCGTTTATTCGAGGGGG
CGTTAAAAAGAAGGGGGCGTTTATTCGAAGTAATACGGTATGATAAAACA
ACTTTTATTTGAAATGTTTTGACTTCCTTCAAGTTTTCGTACCATCATTT
CTCTACATTGCATTATTTACCTTTCACATTTTTTTCTTCACAAAATTGAA
TTTGAAAACTCAATTTGAAATTGAGTTTTTGTTACTGAATAATGGTGGTA
AAAAAGTGCAGACAGTACAGTGAACAAAAGAAATGACGTCACTTAAACAA
TAGATGTACGCTTTTGCTAAACCCCCTTTCCCCCTTCACTGCATACGTAC
TATATGGATGGCCCATATACCTTAAGGGAATCATTCTTTGAGGGAACCAC
TTTTTGCAGTGTCAATCTGAGATTTTTTGTGGAACTTAAATTTTTAGAAT
TTTAGATAACCATTTTAATGTTTTTAACTAAAAGATGCTGATTGTGATAA
GATAACCAAAATTTTTTCTCATTTTGAAAGTTTTGCTGGAACTTGACTTT
GCAGTTTGGGGTCAAATCTACAAAAAGTGCAAAATTTAGTTAGTTCCCTG
AAGGTTATTCCATAGTTCCCTGAAGGTTATTCTCAAAATTTGATTTCTTT
TTCTTTCACTTTTTATTTAGATGGAAAGCTGATGCATCTGATGAGCAACT
TAAATAAAATTTTTGGAAAGCTCAAGAAAAAGAGTGTAAAGACTCAGCAA
ATCTTTGTTGAACTTGCTGTAAGTTGAAATAATTTTTTTAATTTAGTTTT
TTAATGGTCAAAGTGAATGATATTAATTCATTAACTTGTCAAGTTGGATC
ATTAACGATTGGACCTAACGATTTTTTTTTGATTGTCGATGATGGATGCA
TTTTTGGACCTAATTCATGTTATAGCATATCAAATATTGATTATAAGTCA
AGTGCTGGTTTTTTTCGGAATTCCTGAGATAAAAATCTTTCATTTAAGAG
TCATTTGTCTGTAAGAATCGGCAGTTTCTAGAAATATAGGAAGTGATGTC
CTCAGGTTTTCCTCAAATTCAAACCATTGAAAGATACCTTAAGTGTATTA
ATTTTGGCAGGGATTAAATTTGGTTTTTGGTAAAATACACCAAATTAAAT
ACCCGCCAAAATTTTGAAAATTCACCGTCCGCCAAATTAAATACCCGCCA
AAATTAACAAAGTCCTTTTAGGATAGAAATTCTATCAAAAATCAGCATTT
TTTAGTTGAAAACATTAAAATTTTTGATCTACAAGCCCCCAAAATTTTCC
AAACCGCCAAATTTTACAAAATTTGCCATCTGCCAAATTAAATACCCGCC
AAAATTGGCACTTTGGCCGACCGCCAAATCAAGTACACGCCAAAATTAAT
ACACCTAAGGTATTATGGATTTGAGCAATTCCTGAACAATTTTTTTCATT
TCGACCAAATTCAGGATTTTACGGCATTTTCAAATTTGACATGTTTTACC
CATTTTTTGGGACCATGGCTTAACACCAACTTTGTCATTGCCGAAAATCT
GAATGAGACTTATTGAGATGGATTTTTTACTGAAAGTGGTAGTATCAATG
GGTTACTTCAGGTTTTGGCCAAAAAAAGGTGTCGTCCGCCGGACTCTAGG
TGGCTAGAAATAATTGATCAAAACCACCTTTCCAAAACGACTGATAAAAA
ATATCTTGAGTTTGGAGGCCCGTTCAGGGGCTCATAAAATCTATTTTAAG
CATCAAAATGCAACAAAACCTTTTGTAATGTGAAATATCAATAAAATACT
ACAAATCTAGCAAATAATAAGCACTTTGAACGATGGTGGTTTTGGGCTAT
GACCACTAGAAATATGAACCAGCCACAAGGTTTACTAGGTTCTAGACCCT
TTTTGGCAACCGGACAGCATTTGAAAAACTGGATCTGGAGCGTACTTTGA
ACAACTCGAGAGTGATGGCAAGACAAGCAAACCCTCTCAAATCCCTGAAA
AAATTCATAACCATGTCAGGTATCAGGTTTGGTTTGAATTTGAGCAAAAT
CTGAGGATATCACTTCCTAGCCCTGCCTGATTCTTACAGACAATGGCTCT
TAAGCCATATTCAAGCAGAGTCTGATTCAAGCTCCTAATTTTCCAAACCC
AGCAAAAGTGATGACGTCAGACGGGGACCAGTCAAATTTTCAAAATCGAT
TTCATCATCCCTTTTCTGCTGCCATCTTATTACCTTTTAATTTTGGCGTG
TACTTAATTTGGCGGATGGCAAATTTGTTAAAATTTGGCGGGTATTTAAT
TTGGCGGATCGGGAAATTTTAGGTCCTTGTAGATCAAAAATATTAATGTT
TATAAATTAAAGATGCTGATTTTTCGGTAGAATTTCTACCTAAAAGTATT
TTGTTAAATTTGGCGGGTATTTAATTTGGCGGACGTTCAATTCTTAAAAT
TTTGGCGGGTATTTAATTTGGCGGATTTTACCAAAAATGGCCAAATCTGC
CAAATTTAATCCCCGCCAAAATTAATACACTTAAGGTATTTAGAATACAT
TTTAGTGACCTTTCTTAATTTTTACCCTGCTGGATAAGTTGGGTTAAACT
TCAGTTTATAGCAAAATTAAAATGATCTAAATGATGACTCTGCTTTCATT
TTAGGACAATGAAGATCCCGAGGAAAAAATGTCAACGTGCAAAATCTCAA
CTTCGTGTCCCATCCTTCTCATAGAGAAAAATAAAATTCATCTTCTACTT
CACAAGAAATTGTTGTTCAGCACTGAACGTAAATGCATTATTGAAGCCTT
TGTCGCGTATATCGCGTCTTACTATCTGGTCAACATGGGTTACCCATTAT
CTTTGGAAATTGGCTTGTCAGTCCTACAACTCATCCTTTTCAAAGATGAT
AACATCAGGAGCGAAATAAAGGAGGACGTGCTCAAAATCCACAAAGAGTA
CCAAAAATTTTGAACAGACTACTTTAGGCTTCAGGTATTATGTATTTTAA
ACCTTTTTGATACTTAAGCCCCTGCACTATTAGTTTTTGGTTAGGTTAGG
TTACTATACCGTATTTCTTCTAATAAGCGCCGCGGCGCTTATTAAATTTT
CTTGATTTAAGGTGCGGCGCTTAATAAAGGGCGGCGCTTAATAGAGGGCG
GCACTTATTTCAAAATTTGAAAATTTAGTTTTTCAAAGGGCTTCAATAGT
TTCACGAAGTTGGTTAAATGTATATAGATGGTGGGTTCTTTATACTTTAA
AGCTCAGACGTTGTTGTAATGACATAGAATAATGATAGATTTATGATTTT
AGAGTTCGCTATTGAAGGTATAAGTTTGAATGTCTTCATTTTCAAGCCAT
TTTCTAATAAGCGCCGCATTTAGAGGTGCGGCGCTTATTAGAGGGCGGCG
CTTATATCGAAATTTAGATTTAAGGTGCGGCGCTTATTGGAGGAAATACG
GTACTCTATTTTTGGACCTACCTGGAGGTCCTATAAATTAACCTTTGTCC
GTCCGTCCGTTCGTTCGTTACCAGCTTTTCTCGAGATTGGCTCATTTGTT
TTTTTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005500XLOC_005500Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009835-exon-sc0000099-1575043694:35031..36098TCONS_00009835-exon-sc0000099-1575043694:35031..36098Clytia hemisphaericaexon
TCONS_00009835-exon-sc0000099-1575043694:32242..33144TCONS_00009835-exon-sc0000099-1575043694:32242..33144Clytia hemisphaericaexon
TCONS_00009835-exon-sc0000099-1510915933:35031..36098TCONS_00009835-exon-sc0000099-1510915933:35031..36098Clytia hemisphaericaexon
TCONS_00009835-exon-sc0000099-1510915933:32242..33144TCONS_00009835-exon-sc0000099-1510915933:32242..33144Clytia hemisphaericaexon
TCONS_00009835-exon-sc0000099-1491911889:35031..36098TCONS_00009835-exon-sc0000099-1491911889:35031..36098Clytia hemisphaericaexon
TCONS_00009835-exon-sc0000099-1491911889:32242..33144TCONS_00009835-exon-sc0000099-1491911889:32242..33144Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000099supercontigsc0000099:32242..36098 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.12394	0.275799	0.609165	1.13351	1.46247	1.18868	0.839795	1.04423	0.446192	0.647673	0.376703	0.928611	0.537467	0.64202	0.610381	0.585322	0.348904	0.214569	0.197626	0.346673	0.539244	1.0521	0.177634	0.226093	0.532274	0.534422	0.344307	0.363013	0.481472	0.175194
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009835 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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