TCONS_00009820 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009820
Unique NameTCONS_00009820
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1388

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009820 ID=TCONS_00009820|Name=TCONS_00009820|organism=Clytia hemisphaerica|type=transcript|length=1388bp
TCAGACAATACATTGAACTGGAATTTTTGGCAAGAGAAATGGTTGGAAAG
ATTATTGCAATATTAAGTTTCTTCTGGACAGCATTGGTAGTCTGCTGCAC
TGTTTCAAGCAAAGGAATCGAGATCTCAGTGATCACACCGTTTGAAGGAC
CGTTTTACGAGGTTGGGCAAGAAGTTATGATTATTTGGACAATCGAAAAG
AATGggaaatcatttttttatcGAAATGCCGTTAATTTCTCTATCAAAAA
AGATGGTATCACAACAGATTTGGATATGTTTTCGTTCCCGTTTGACCCAA
GCATACAAAACGCAGATAATGTTTACATATGGTTTGGTCCTTCAACAATT
AATGTGTTGATACCAAACCTTCGGTACAACGATACATACGAATTTATTTG
CCAGACAGTTCTCACACTGGAGaacaaagaaataaagaaatccGTGGTCT
CCCTTGCAAAAATTTACGGTGGTGTTAAAAACTGTGGCATCATGCAATTT
GAAGATAGATACATCTTTACAGAAAGTTCATCTCCAACAATATGGGTGAC
TTTGTGTGGAAATCCACAACCTGATTTGAAATACACGTGGAACGGCGAAA
CAAGGCTCGCATCTTTAGGCGAAACAATCGATTCAGAAACGAAGATGTAC
AAATATGCAATGGAGCTGGAAAACATCAGTAGAATGCATTGTGGTACACA
AATCAAATTCGTTGCCACTGGATATGAAAGATTGGAAAAGACAGCTAAAG
TTTATGTATTGTATAAACCTGATGCAGGCGATTTTGAAGTTGTTAAAGAA
ACAAATCGTCATGGCGACGGAAAGAACTGCACCGTTTACAACTTCCCTAA
CTTTAACACAGGATGTCGAGAGCGTTACAATATCTATTTTTTTGATAAGT
GGGAAAGAGTTTTGAAAGTGTCGGTGAATTTATCAATCGGTTTTTATGAA
TATGAAGACTGCAATCACCATACATCTAGATACTCCTTCGACGACGTCGC
GTTTACAAGAGTTCAAGTCATCAGATGGGACGGCCTAACGGGAGAAATGT
CAGACTTAAAAAGAATCGATGAGAAAAAAATAGttttagagaACGGACAA
AGTGTTGTTAGTCGAAAAAGCATCATCTTACTTGCAATCGTCTGTTTTGT
CAGTGTTGTGGCGATCGTTGTCGTTGTGCTCAGCTGTCGGTGGACACATT
GTTCAAAAAATATCGAAGAAAATCATGCCAAGAAACTGAAGGAAAGTCAA
ATGAATGAAGAAGACACAGAAGAAGAACgagaagatgaaaagaaaactga
TTCCAAAGAAGTCTTCTTCTATCAAACAAAACCGACAGCCGTCAAAATAG
ACGATTTATTGTGAAAGcgaattttcaaaatgtggAAG
Run BLAST on NCBI

transcript from alignment at sc0000099:441431..446295+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009820 ID=TCONS_00009820|Name=TCONS_00009820|organism=Clytia hemisphaerica|type=transcript|length=4865bp|location=Sequence derived from alignment at sc0000099:441431..446295+ (Clytia hemisphaerica)
TCAGACAATACATTGAACTGGAATTTTTGGCAAGAGAAATGGTTGGAAAG
ATTATTGCAATATTAAGTTTCTTCTGGACAGCATTGGTAGTCTGCTGCAC
TGTTTCAAGCAAAGGTTAGTTAAATACAGCAGACTCTCTctgattcgatt
ttcaaggggctaacaattttatatgaattaaatattcgaattacaaaaag
tAATTTAACCTACTGTCCAGCAAAGTAGGTTCAACATttcagttcgaatt
acagaaagattcgaataatgtaggttcgaattagagagagttgactgtaa
ttAGGTTTATTATACCAATAGTGATGATGACGATTAACAGAAAATGTCCT
AGGCTAGTGAACACACGAAATGTGATTGATCGAAACACACTAGCCTGTCC
GCTCGTGTAGTGTAGTGAAAACTTGTTGAACGGAGGTTATACATCACGTC
TGACACTCTGGCTACGTTGTTTACTGTttattgtataattttttataata
aacTTAGGGGGGAAGGAGCCTTGTAATATGATTCTAGCGAACTCAGATCG
AGGCTTCTCTCAGGGTTTCTAATGCTTTGATGGATGGgagtttttaaatg
aaaatttttttgtgtcCTGGGACGGCAGGGGAGATCAGGCTACGGTATCT
ACTGACTTCCCCTTCCTTCTCTATCCCCTTCTTATTTTCCTTTCGATTTT
TCTCTGTATGTTTGAAAGTATAATTCGTATCTATAATCCATCCATAGGAA
TCGAGATCTCAGTGATCACACCGTTTGAAGGACCGTTTTACGAGGTTGGG
CAAGAAGTTATGATTATTTGGACAATCGAAAAGAATGggaaatcattttt
ttatcGAAATGCCGTTAATTTCTCTATCAAAAAAGATGGTATCACAACAG
ATTTGGATATGTTTTCGTTCCCGTTTGACCCAAGCATACAAAACGCAGAT
AATGTTTACATATGGTTTGGTCCTTCAACAATTAATGTGTTGATACCAAA
CCTTCGGTACAACGATACATACGAATTTATTTGCCAGACAGTTCTCACAC
TGGAGaacaaagaaataaagaaatccGTGGTCTCCCTTGCAAAAATTTAC
GGTAATTCCAGGTTTATttacaagaacaattttataagagcacgaactta
attttgttgaaacttaagaaaaaattgagaataatcTTCAGCCTCAGATT
TCAAGAAAGAGGATTATTTTGATCCATTGTGATCTCATCTAGAAAAATTG
GCCCCGATTCGTCTCTGGTCGGAAAGATACCCTAACATATAAATCCAATT
GGATGAGGACACACGCTCATCTTCAATAGTGGAAATTAATCGGTAAAAAT
AGAGTTTAAACTCCCCACCaaataaaataagaatttcCGATCCCCATTGG
TATTTGGTTAAGACAGGGTTGTATCCTGACATGTGAAAGTCATCTTCTCT
ATGCAGTTGATGTCTTTtaaactcgaacctctataactcgaataagTTAA
CTCGTTCCTTCAGTCCAGTTAACAATGTCATATAAACATTACTCTgtaac
tcgaaatttctttaactcgaacaaatttgtgctcCCTGGAGACTGCACTG
TATTCAGTTTTAAGACAGATGTGTAACCAAGATTGTTAAGCCAACTCATT
ATCTCTACAATGACACAGGTGGTGTTAAAAACTGTGGCATCATGCAATTT
GAAGATAGATACATCTTTACAGAAAGTTCATCTCCAACAATATGGGTGAC
TTTGTGTGGAAATCCACAACCTGATTTGAAATACACGTGGAACGGCGAAA
CAAGGTAAATATTGAATTtagcggtttctttgttttcgagtggtatattt
tttgaaatccagcgaaaaattttactttcaatccggaaTTTGTACAAAAA
CCCCACCGGCCAATCAAGGCCGTTCAATTTAGATAGACTTTAGAgccttc
aaatcctaccaaggagattcgtttctagcccttcgggcttatatttCATT
GGGGTTGACCCTCTACTAACAATCACCAGTTAATTCTCTTCAAACAGGCT
CGCATCTTTAGGCGAAACAATCGATTCAGAAACGAAGATGTACAAATATG
CAATGGAGCTGGAAAACATCAGTAGAATGCATTGTGGTACACAAATCAAA
TTCGTTGCCACTGGATATGAAAGATTGGAAAAGACAGCTAAAGTTTATGT
ATTGTGTAAGTTTTTGTTGCTACTTTTCGAGAAAACAGCTAAGATGGATG
TGACCTTCTTTCTTATTAGTCGaaggaaaaataaagattttcatttattc
CGCTCAGATACGTAACGGTTGACGAAGGTTGACATAAAGTCAATATTCAT
CTCTTCCCCAAGCAAAATTAATGAACAATATCGAAAACAATTAAAgacaa
aaatgagaacaatGCATGTGTATGGGGACCACCCCTTAGCAAGATTGTAC
CTTTAGAATTAACCTCAATAAGAAAGCgcacaaatttaaaaattcagcTT
GGCCAACCCAAACCAAACccaaaaagttgagaatatacgaaggcttcaaa
aattttggatgttcttataaaaagaacgtgTAAAGCGAAGTTCGCTGAAG
TTTGAATATGTTTTTCATTTAGATAAACCTGATGCAGGCGATTTTGAAGT
TGTTAAAGAAACAAATCGTCATGGCGACGGAAAGAACTGCACCGTTTACA
ACTTCCCTAACTTTAACACAGGATGTCGAGAGCGTTACAATATCTATTTT
TTTGATAAGTGGGAAAGAGTTTTGAAAGTGTCGGTGAATTTATCAATCGG
TTTTTATGAATATGAAGACTGCAATCACCATACATCTAGGTATGTCGAAT
TTTGAAGAGCTTTTTGTGTATTTGTTAATTTCAGTAGAAACCTTTAGAGG
CAGAGAAATACTAAATGTTAGATCTTTTTGAATGTCAACAAAGCCAATCT
GGTTGTGTTGccagttttttatcaattctGTTTTGCTTCTTTATACCCCG
GGGTGTTTGGGCAAAATAAGGTACGGGATgtaccgctggtcagggtacct
ttttcacctccatgagtcccaggtagggtcgcaaaaaaacactgaaatag
aaaaatcagtccctcgtggGGTACCGTTTTGAGGAAATTTGATgggaaaa
aattgagaaacttttggcatttcagtcccattcagtcctattcattaaaa
aaaacgagtcccGCGTAGGGTTTATTTTTTGAACTTCAGCGGCACACCCC
CATCGGACGGCAAGGATAGCACACCCCGGGTTTTATAATACTAATTCTTC
ATATTCTTTCAATTTATCAACCACTCCCACAATGTTTAAACTTAAAAGCA
AAGTaaataccgttgaaaagataacatTTCAGAGCATCATAACATGCGCT
TAAAAATGACAGACAATGACCCCCCGGGGGGGGAGGTACTTGGGCAAAAT
GAGTGTGTCTCTCTAACGGTggacaaaatttttgataatttgccTCGGAC
ATAACCGTCATTTCGCAAATCTAGTACCCTCCTGGGAAACGGAAAAATgt
agaataatagtttttataCTCTTTTGTGCTGGAAAGTTTTATGCTGTGAA
GGGGTTAAGTCTTATTTTGTTTCACGTTGCTTGATTTAGATACTCCTTCG
ACGACGTCGCGTTTACAAGAGTTCAAGTCATCAGATGGGACGGCCTAACG
GGAGAAATGTCAGACTTAAAAAGAATCGATGAGAAAAAAATAGGTAAGAA
AATGCTTTGAAGTTTATTAGAGTGATACTTTATTAAGTATTACAAGAAca
tactatataagaacaaaaggcttcgatggccaaaatattgagaacaagtt
aaggacatgggatttcaaggcttttgtggcctctaaaacacccgatttct
tagggaaaTTGGCAAAAACACTCATAAAATAGTGAAgttaagaacacgtt
aagaacatttttaggcttgaaactctaaaatttaagaacatccgaaagcg
tCAAAAAttatggatgttcttataaaaaagtgtactaAAATTCTTCTCAG
ATATTCATAGCATGTctttaaatgtacatacttaCCTATACAGTTTCAAT
AACAGAGGCCACACAAATTTCGGTTTGAGCCCTAACTAATTattgaataa
tttgaatttattaAATTTAACCATCTTTTAGGATACCTTAGGGAAATATC
AAAAGTGTTAGAATTCTACCCTGTGCTTAACCCTCCCATACGATAAATGA
TGGcgtaaattttacttttttttagttttagagaACGGACAAAGTGTTGT
TAGTCGAAAAAGCATCATCTTACTTGCAATCGTCTGTTTTGTCAGTGTTG
TGGCGATCGTTGTCGTTGTGCTCAGCTGTCGGTGGACACATTGTTCAAAA
AATATCGAAGGTTAGTCAATTTACAAAAGCAGCCCTTCGTAAAAGCGAAT
CTTtgacctttctcaggcaagaaaaagtgaagccttaggAATACACGCAC
TTTTTTGACGACGTGAAATATTTACTTTCAATCTAGAATTGGTATAAAAA
CTAAGTGGACCGCTCAAGGCCTTAGGTATGATTTAGTGGCTTCAAATTCT
ACGTAGGAGATTCacttctagcctttcgggcttttaCTTCCTTGTACAGC
ACCCCAAATGTATACAGCGTTTCATTGTTTCCACTTTTTATGCAGAAAAT
CATGCCAAGAAACTGAAGGAAAGTCAAATGAATGAAGAAGACACAGAAGA
AGAACgagaagatgaaaagaaaactgaTTCCAAAGAAGTCTTCTTCTATC
AAACAAAACCGACAGCCGTCAAAATAGACGATTTATTGTGAAAGcgaatt
ttcaaaatgtggAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005492XLOC_005492Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009820-exon-sc0000099-1491911889:441431..441544TCONS_00009820-exon-sc0000099-1491911889:441431..441544Clytia hemisphaericaexon
TCONS_00009820-exon-sc0000099-1510915933:441431..441544TCONS_00009820-exon-sc0000099-1510915933:441431..441544Clytia hemisphaericaexon
TCONS_00009820-exon-sc0000099-1575043694:441431..441544TCONS_00009820-exon-sc0000099-1575043694:441431..441544Clytia hemisphaericaexon
TCONS_00009820-exon-sc0000099-1491911889:442178..442531TCONS_00009820-exon-sc0000099-1491911889:442178..442531Clytia hemisphaericaexon
TCONS_00009820-exon-sc0000099-1510915933:442178..442531TCONS_00009820-exon-sc0000099-1510915933:442178..442531Clytia hemisphaericaexon
TCONS_00009820-exon-sc0000099-1575043694:442178..442531TCONS_00009820-exon-sc0000099-1575043694:442178..442531Clytia hemisphaericaexon
TCONS_00009820-exon-sc0000099-1491911889:443099..443234TCONS_00009820-exon-sc0000099-1491911889:443099..443234Clytia hemisphaericaexon
TCONS_00009820-exon-sc0000099-1510915933:443099..443234TCONS_00009820-exon-sc0000099-1510915933:443099..443234Clytia hemisphaericaexon
TCONS_00009820-exon-sc0000099-1575043694:443099..443234TCONS_00009820-exon-sc0000099-1575043694:443099..443234Clytia hemisphaericaexon
TCONS_00009820-exon-sc0000099-1491911889:443478..443635TCONS_00009820-exon-sc0000099-1491911889:443478..443635Clytia hemisphaericaexon
TCONS_00009820-exon-sc0000099-1510915933:443478..443635TCONS_00009820-exon-sc0000099-1510915933:443478..443635Clytia hemisphaericaexon
TCONS_00009820-exon-sc0000099-1575043694:443478..443635TCONS_00009820-exon-sc0000099-1575043694:443478..443635Clytia hemisphaericaexon
TCONS_00009820-exon-sc0000099-1491911889:444053..444269TCONS_00009820-exon-sc0000099-1491911889:444053..444269Clytia hemisphaericaexon
TCONS_00009820-exon-sc0000099-1510915933:444053..444269TCONS_00009820-exon-sc0000099-1510915933:444053..444269Clytia hemisphaericaexon
TCONS_00009820-exon-sc0000099-1575043694:444053..444269TCONS_00009820-exon-sc0000099-1575043694:444053..444269Clytia hemisphaericaexon
TCONS_00009820-exon-sc0000099-1491911889:445070..445173TCONS_00009820-exon-sc0000099-1491911889:445070..445173Clytia hemisphaericaexon
TCONS_00009820-exon-sc0000099-1510915933:445070..445173TCONS_00009820-exon-sc0000099-1510915933:445070..445173Clytia hemisphaericaexon
TCONS_00009820-exon-sc0000099-1575043694:445070..445173TCONS_00009820-exon-sc0000099-1575043694:445070..445173Clytia hemisphaericaexon
TCONS_00009820-exon-sc0000099-1491911889:445706..445840TCONS_00009820-exon-sc0000099-1491911889:445706..445840Clytia hemisphaericaexon
TCONS_00009820-exon-sc0000099-1510915933:445706..445840TCONS_00009820-exon-sc0000099-1510915933:445706..445840Clytia hemisphaericaexon
TCONS_00009820-exon-sc0000099-1575043694:445706..445840TCONS_00009820-exon-sc0000099-1575043694:445706..445840Clytia hemisphaericaexon
TCONS_00009820-exon-sc0000099-1491911889:446126..446295TCONS_00009820-exon-sc0000099-1491911889:446126..446295Clytia hemisphaericaexon
TCONS_00009820-exon-sc0000099-1510915933:446126..446295TCONS_00009820-exon-sc0000099-1510915933:446126..446295Clytia hemisphaericaexon
TCONS_00009820-exon-sc0000099-1575043694:446126..446295TCONS_00009820-exon-sc0000099-1575043694:446126..446295Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000099supercontigsc0000099:441431..446295 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.05526e-10	0	0.545136	0.766663	0.486959	0.256534	0.270811	0.217311	0.237658	0	5.01189e-10	0.00882359	23.5819	38.6605	0.478433	0.220042	0.090358	0.046307	146.094	89.6409	0	0.170293	0.119289	0.345042	0.193847	0.14417	0.0412613	0.0440351	0	0.408341
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009820 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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