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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009811 ID=TCONS_00009811|Name=TCONS_00009811|organism=Clytia hemisphaerica|type=transcript|length=802bp
GAGAAGTAGAGTTACTTGTGAGTTTTTGTTGGTTAGAAAATTTACAGAGA
AAAGAAACATCTTTTTTTGTACTACAAACTTCTTATTGAAGAATTTCACA
GAAAAAGAAGGTTTTCTTGTATATTACATTTTGTCATTTGTATGTGAAAA
ATTCTGTTTCAAGGAATAGAGAATTCTGTTTGTTGCCATCAATTTGTACA
GATGAAAGTTTTTTGAACCATAAGGATTCCGCCGAAAATGCCAACTTGCA
CACACATCAATTATCACCAAGAGGCTCAACGTAAACAAAGACAGATCGAA
AGAAAAAATGCTGCTCTTGTCAGacttcaaaaagaaaaaGAAGAAGAGGA
GAGAAGGTTGAACGAAGAAATCCGAAGACAACAATTCGAAAAACTCGAAC
AAGAAGAAAACAGACGTCTAGAACGTGAACTCCATCTTCAACAATGCGGT
GGCAAAATCAAGCCAACAGGCTACTCAAGTAAACAAACACAAGTGAAATT
TCAAACCCAGTCCGATTTACGACACCAGTCGAAAATTTTACGAGATCATG
GACTTGTTATGGGTCACGTTAATGGACAATTTTTCTCGTAAATATATTga
caacaaaaatatttatcttattattttttgtaatgTTTTAGTGTGTGTGA
TTTTAATGTACAAATAATGATTTGACAAAAGAGAAATATATGATTTTAAG
GTGATGATGTTATAATATGGGTTTTGTAAtataattaaagtctgtctcaa
aataatttgctgCTGAGataaaaatggctgtaacttttgatagaattcga
ac Run BLAST on NCBI transcript from alignment at sc0000099:301106..308383+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009811 ID=TCONS_00009811|Name=TCONS_00009811|organism=Clytia hemisphaerica|type=transcript|length=7278bp|location=Sequence derived from alignment at sc0000099:301106..308383+ (Clytia hemisphaerica)
GAGAAGTAGAGTTACTTGTGAGTTTTTGTTGGTTAGAAAATTTACAGAGA
AAAGAAACATCTTTTTTTGTACTACAAACTTCTTATTGAAGAATTTCACA
GAAAAAGAAGGTTTTCTTGTATATTACATTTTGTCATTTGTATGTGAAAA
ATTCTGTTTCAAGGAATAGAGAATTCTGTTTGTTGCCATCAATTTGTACA
GATGAAAGTTTTTTGAACCATAAGGTAGCCTAAGGTAGTGATATTTTGAT
ATATTATATGaccatttttaacaatttttacaaTACTTATGAGTATTCTT
TCCACTGCCACACCCTTTTGAGTTTCGGTTGTTCTAATTTTCCGGCCCTT
TGAGCATTAAACtattcttatcctgttcttattttcacgttgTGTTACTT
TAGTCTTTGCTCCCTGGATTTGCATTTTAAGTTAATTTGCTCAAGATTCC
AGCACTAGGCTTATTAGGATTAttcatgtacacgtttttttataagagca
tgaagccttcggatgttcttactttgagttttaagcctgaaaatgttctt
aacatgtttttattttcacctctTCAtaaatttttgctcattttttccta
agaaatcgggtgtttagaacccgcaaagccttagaatattatataaattt
ttcttaatatttcggccatcgaaggcTTATATATATTGCTCTTATAATAA
AACGTgaattgtttttatttggttGCATTTTCCAGGGTTCAAAGGGTTGC
CTGTAACTAAACAGGTCTTTCGATAAGCTATAAGTATACGTAACAAGCCG
TCGTTCTATTCAAACATAAGACTCCATTACCGGATCTCATATTTCGATGa
cttccaaaggatgtttccgATATTTTCCCCGGGCTAGTGGACGAAAAGTA
GAAGGTCGATACTGGATCAGTAGTGTAGACAAGAGGGGcgtaaaatttgt
gtaggagaacagatttttatgacattacaattatctttttataccATTAT
AGAtgattacagtgtcataaaaatctgctctcctacacaaacttcgcgcc
cctcctgtctataCTACTGGGGATAATAGCTCGTGTTTTACTGAAAGACT
GgcaactttttttgactttcttaTGTTTAAGGATTCCGCCGAAAATGCCA
ACTTGCACACACATCAATTATCACCAAGAGGCTCAACGTAAACAAAGACA
GATCGAAAGAAAAAATGCTGCTCTTGTCAGacttcaaaaagaaaaagtaa
ggcTGATatacattacgtaatgttttctacggaaacacCTGGGCTTATGG
AAGTAGTGGAAAATTTAAGCATGagaaaaattgtttacattttgccAATA
CTGGACaatccgtagaaaacattacatcatgaatacacgttttttagaaT
TAGAGGCACTACAAAAGCCATCACTTGCAAAGTAAATGGCTTGAAACgtc
aaaacttaattttttagccACAGGACAGGGTAAATTTTCCTTTCGAAAAT
ACTATACAcgttttgagatttaagccaaaatcttttttccaatttcctta
gaaatcgggtgttttagagtcccaaAAACCTTAAgacgttcttaacttgt
tcttagcatttttgcGATCGAAGTCTTATACcgtttgtttttatataaaa
acctgtaaaagagaaaattatCTAGAGAAAAGTGTTTGTCAATTTCGTAC
CCAGAGCTATTTATACCACTTGAATTTTTactgatacacgctttttataa
gaattaaccttaaatatgtattttccaaaaactaaaatgttaaaaaaaat
aactaaaagtTTCATGCACTTGCGTACAATCATCAGATATGACTAAAAAT
AgtgttgaaaagaaatttaggtaCAAGGAAAAATTCTGATTCATTAAAAA
GTGATTAAAACATGTGATGGAAGATTATTAAAAGAtcgttaaaagataaa
aaagacaAAGGTAGTAAAACTGTAGAATTCTCAAGGGTCTGGTGGAACCT
CTTTGAAGTTTTACGTAGAAATTAATTCAGATGGTTTATTTAATAGTTTT
TCCTTTGACAAAATAATGTGGTACTTTTCCGTAAGGCATAGATCACATAA
TTTGCTGCCATTTTTGTACGGTTGGGCGTGGTCGATAACTTTCCATTTTA
GAATAGCGCActgcgctgaatctaaaaatagattttatttttgacataat
cattactctcgatgtgtttgtacgagttccaatcccatcaatctttgcgt
taatctcttttgcacgctAATTGGATCGTTTGACAAAAGATATATAACAG
CTTgcacgtatctttaattgagccgcgttgaattgtgggattgcaactcg
tacaaatgtcaaaaaaagtgaaaagtaataattatgacgtatgcgttgcg
gagcgTTCGATGGTCTTATTCTTAAGAATTTAccttataagaatatttat
gatgagattggccaaaaaatagaaatatggtaagaatatcaccatcatgg
agtTTGGCAacataacctaagaatgccatttttagagcattttaccaTTA
AATTGCCATTCATCAATCAgcaaattttcacgaaaatgtCAAATTGAGGT
ATGTATTGCATGCTAGATTTAGGTTGGGTTTGGTTCCAAATcgaagaata
ccgtaagaatatttcaggatgattttcatCGGAAAGTTAAGTGTGTAGAC
GTAATACCTTACGTGGATATATTCTGGCGGGGATTAAAATTAGCGAATCC
AAATTAAATCAtcgccaaaatttctaaattcggcaattcaccaaattaaa
tctcgccaaatttttcaaaatttccctttcaccaaattaaatcccatcct
cgccaaaattaaaagaaaatcatgtttttaatcaattctGAACTTCAACA
AAACACCTtaataaaaaacacttttttttgtctttcaccaaattaaatcc
ctgccaaaaatcgcattttggtcactcgccaaattaaatccacgccaaaa
tttatccacttaaggtataatCGTGTGCGTTTCGTGAGCACTATCtgaat
cataaaaaagcgaATTTatggactgggttcgagtttgacTACTTGTTGTT
TAACAAGACAGGGACAAGATTGTAAAGactttttaaaagatttgagGTAA
TTTTCTTTTCACGGACAACGTGATAAATCCTATGCAAAAGTATTCAAAAT
CTGTATATGTGTaacttaaaaaaatacttttaataGACAATGGCTAGCGG
ATTgctaaagttttaaaaaatcaggaaaaattgtgaacaactttttgata
tgtttttactcaatttgagggtgcttgAATTTGAATGTTCCCAAGCTTGA
AAACCTGCAGTTTTCttgtaatttgcgatttttacgtttttaggtCTTTT
AGGTAAAAttgtatatatatagtatgaaaaaataaaatgttttctcctgt
cagaactacaaacaacaaagagtggccgaattctttttcctcttagagag
acgatgttacaatGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagtcctctctg
ggtccctctgtctttatcctggcttgggacaggctgactgtcatttaaga
cagtcaggcgacattaccccagcggcctgtacaagatgacagcaaactcc
aggtagactgacaggagaagaaaacaaaacatgaaTCAACAAAGGTGTAA
ACACCTTAGACTCCTTTGGAGCCGACTGCACTATATATACGGGTATATTG
TATATGATTTTCGGGggttcttcaaaatcaaaagagacctataccacgtg
atatAGCTCTTCAAACTAAAACTaatcatatcatgaatatataaacgact
ggacatccatctcctttgtctttttgaagataacacagctagcttcgttg
ccgcctcgttaaaggcataaaatgaaacaatagattttgatgatatacca
cttgggaataccgtgctaacaacgtcaaaacttcgacaaaagtctctgtt
gttctactcttctcaagtcttttatctatatcataacaaagataacagag
acaaaatcatcgtcagcttgtcaaaactccggctaatatttctaaatttt
gacttgaaagtgtctaataattctAGAGAGtatcacattctaatttcgat
attcttattacacaggctctcaactttggcaagctatgagagtgtcacat
tctaatttcgatattcttattacacaggctctcaactttggcaagctatt
ttttttcttttagtcttaaaaataattattggagtgacaaaagggattca
aaagtatacacccAGTtgtaattctgcatttcagagttgaaaatgttgat
aaaatatataaacttgtaaaaaaattcgaaaacaaTNttcagagttgaaa
atgttgataaaatatattacaaacttgtaaaaaaattcgaaaataatttt
tttgtgcattaggagtaatgttcaaactctatcaatctttttacctaaat
aattcaaagaaataaaattatgacggaatattgtcggatttttcatacca
attttaaaatacaggCAGCAACGAAGCTCACTTCAAAGAGACAagaaaag
atagatgtccagtagTTTTATGTTCATGAtcatatcaaagtctcaacttt
tctagatcaaaagttatcgacgattttgtggtcaaaaattgattgaaaac
agggaatttcccctcaatctgcataatttatgcaaaatttcagGGAGCTG
GCCACGGCCTATAATGAATCTGGGTCACACCTTTTGTGTTTAATTTAGAG
GAGTTTTAAATCTCACATGTGACGTTAAATAGCTAATTAATCATCTGACG
tcaaacagttttttttaaattttgacgtCACACAAATATTTACTGATAtt
tattttctcaaaacaaaaaaattcttcaacaacaaaacaatcaaGATCTA
AATTTTATCGAAGAAATAAATTCTTCAACGCAAATCAGTACCGTACAACA
GATGGGAAACACGTTACAAtcttcaaaatcttaaatttcttaaaatctcG
TAAACTAaaacactttttcaaaatggctgctTATCACAACGAAGCCCTTC
GTAGACAACGTGTTATTGATCGTAAAGTTGAAGCGTTGGCTCGGATATCA
ATTCGTCAGGTTAGATTCCTTTTAGGCCTCAGAACAGTGtacattacacc
cctgtctcagtgctccgaaagaagattttcaatttttggcctcAAAATTG
TATAAATTACTCCCCTGTTTTAGTGCGACGATAAAAGGTTTTCAATCATC
CGTCAGGTTAGATTCCTTTTAAGCCTCAAAACAGTGTacattatacccct
gtctcagtgacccgatAGAAAATTTTCGAGCAGCGGTGATAAAAATTCTc
attaaatcttcaaaaataaaatcaatcacTCCATTTCATAGTCATAGTTA
ATCAATTTTAAGGCAGTTTTTCACAAACTATacataagaacaaaaggctt
gaTGGctaaaatgctaagaacaagtttaggaaataaaattttagacaaaa
atactcacaaaatggtgaaaatatgcAGCATGTAAGAAGATTTTTAAGCT
TCAAACGTAAAAAGTTTAAGAACTtcagaaagcttcaaaaattttggatg
ttcttatgaaaaacaaaatataactttccaaatttcaatttgaacgagga
ttgtatttttttcactgaagatgatttttttctcgGTCAAATTGCGGAAA
CGGGGCATCTCACCACGGATTCGTAACACTTAGAGGAAATATCATTTAAG
ATGTGTATTAAATGTTTTACTGATGTATAAATGATAAAATCCAGACGAAT
AATTACCTTTCTATAATTCCCACAGGAAGAAGAGGAGAGAAGGTTGAACG
AAGAAATCCGAAGACAACAATTCGAAAAACTCGAACAAGAAGAAAACAGA
CGTCTAGAACGTGAACTCCATCTTCAACAATGCGGTGGCAAAATCAAGCC
AACAGGTAATTTAGTAatctcgtccccgtgtatcccaggctttatttact
ttatttatTAACGCCAGAGAATATTCTGGTATAAGCTGATGCCAACTTTA
CCCCCGTTCcaggttttatttattttattgatttacgccagagaataccc
tggtgtagGCTGATGCAAAACTCTttcccgtgtattccaggctcgattta
cgttactgattgacacCAAGGAATATTTTCGCGAAGGCTAATTTTAGCTC
TCCCTCTCTTTTCCAAAGCAATGCGTTGAAAAATCTGACTAACTTTACAA
ATATGAGCGGCAATGCAATGGTTTTAATATCCAACAACAAATGAAATTAC
GTATTTCGTGCTCCAAAACCAaacaatgccagggtattatctggtgctat
cagtaagcatcaacaAGCCGATAATACATCGGGGACGATGTTGCTTGATA
GTTTTAAATAcgtttctaaaataaaaattctatcgTACTGAAGCTGTTCT
ATTCTTTATTGATTGCTAACAATACTAGCCCCATTATCCCCATTAATCAT
CCCAGACTATTTCATTTTTGTAGTCCAAGGGAGGGGGAGATCTACCACTC
TCGATCATCTTGGATCTCTAGATGATAAATCTCAATGAAAATCAGTACAT
ATCATAAAgatatttcttaaattcttttttcagttgtattgaagttttta
caagatgctcacataattggttattcaaaacaatagagatgacgcgttct
ttagaaaaatataataaaagtttttgtttgaatagttaacgaccaatcca
atgacaaaaattcttgtaaatgttcaacttgacccTCTTTTTTAGGCTAC
TCAAGTAAACAAACACAAGTGAAATTTCAAACCCAGTCCGATTTACGACA
CCAGTCGAAAATTTTACGAGATCATGGACTTGTTATGGGTCACGTTAATG
GACAATTTTTCTCGTAAATATATTgacaacaaaaatatttatcttattat
tttttgtaatgTTTTAGTGTGTGTGATTTTAATGTACAAATAATGATTTG
ACAAAAGAGAAATATATGATTTTAAGGTGATGATGTTATAATATGGGTTT
TGTAAtataattaaagtctgtctcaaaataatttgctgCTGAGataaaaa
tggctgtaacttttgatagaattcgaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009811-exon-sc0000099-1491911889:301106..301329 | TCONS_00009811-exon-sc0000099-1491911889:301106..301329 | Clytia hemisphaerica | exon |
| TCONS_00009811-exon-sc0000099-1510915933:301106..301329 | TCONS_00009811-exon-sc0000099-1510915933:301106..301329 | Clytia hemisphaerica | exon |
| TCONS_00009811-exon-sc0000099-1575043694:301106..301329 | TCONS_00009811-exon-sc0000099-1575043694:301106..301329 | Clytia hemisphaerica | exon |
| TCONS_00009811-exon-sc0000099-1491911889:302237..302351 | TCONS_00009811-exon-sc0000099-1491911889:302237..302351 | Clytia hemisphaerica | exon |
| TCONS_00009811-exon-sc0000099-1510915933:302237..302351 | TCONS_00009811-exon-sc0000099-1510915933:302237..302351 | Clytia hemisphaerica | exon |
| TCONS_00009811-exon-sc0000099-1575043694:302237..302351 | TCONS_00009811-exon-sc0000099-1575043694:302237..302351 | Clytia hemisphaerica | exon |
| TCONS_00009811-exon-sc0000099-1491911889:307081..307210 | TCONS_00009811-exon-sc0000099-1491911889:307081..307210 | Clytia hemisphaerica | exon |
| TCONS_00009811-exon-sc0000099-1510915933:307081..307210 | TCONS_00009811-exon-sc0000099-1510915933:307081..307210 | Clytia hemisphaerica | exon |
| TCONS_00009811-exon-sc0000099-1575043694:307081..307210 | TCONS_00009811-exon-sc0000099-1575043694:307081..307210 | Clytia hemisphaerica | exon |
| TCONS_00009811-exon-sc0000099-1491911889:308051..308383 | TCONS_00009811-exon-sc0000099-1491911889:308051..308383 | Clytia hemisphaerica | exon |
| TCONS_00009811-exon-sc0000099-1510915933:308051..308383 | TCONS_00009811-exon-sc0000099-1510915933:308051..308383 | Clytia hemisphaerica | exon |
| TCONS_00009811-exon-sc0000099-1575043694:308051..308383 | TCONS_00009811-exon-sc0000099-1575043694:308051..308383 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000099 | supercontig | sc0000099:301106..308383 + |
Blast
The following BLAST results are available for this feature:
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