|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009781 ID=TCONS_00009781|Name=TCONS_00009781|organism=Clytia hemisphaerica|type=transcript|length=736bp
AGATATCGAACTAAGTTCTCGATCGTTCAATATCCGAATCAGGGGTTTGT
GATCGACTGCTACGGTGAGGTTTGGGGATCCCATCACGAACATTCGACAG
CGTTGCAGTCCGTGAACAACTGCCAGGGCTTCCCCTTCGATGGGTGCATA
TCTGCTTTCAGAATCAGTGGTGAAGCGGGAGCCGGCAAAGACCAATTTCC
AATGACCTTCTCCGCAATCTGGTTTGACTGGGTCGGGACAGTTGCAGTGT
TTCTGTGTGAGGTCGAACCCAATGCCTGTTTTCGACCAATCCGTTGTCAG
ACAGGTTGGGCGAtccgtttcgaacgttttgacaCCGTCCTTTACAAGTT
CGATAATCTTGTTTTTCGACGCTTGGAAAAGTTCATCGAGCGTCTCATCC
CAGAAAAATGTCTTGGACGACAGGAGTTGGCGGAACGGTTCCATGACCGG
GGCTTGGGCGAACGCGTAAGCGAGTTGGTTAACAAGTCCGAACCAGGATC
GCACATCGGTCACGGATTTCGGGGTCGGGAAGTCTTTGATGGTGGACAAG
ATCTTCTTGAGCGGGCGATATCCGTCTTCGAATAATTCGAACCCGGCGAA
TTCGACAACAGGTTGGCAGAATTGGAATTTGTCCTTGTTGAAAATAATAC
CGTTTTTAGCACAGAGGATCAGATAGTCTATCGTGTGCCAGAAGGATTCT
TCGATGCTGTGGTCCCAGAGTAGTGTGTTGTCGACA Run BLAST on NCBI protein sequence of TCONS_00009781-protein >TCONS_00009781-protein ID=TCONS_00009781-protein|Name=TCONS_00009781-protein|organism=Clytia hemisphaerica|type=polypeptide|length=245bp
VDNTLLWDHSIEESFWHTIDYLILCAKNGIIFNKDKFQFCQPVVEFAGFE
LFEDGYRPLKKILSTIKDFPTPKSVTDVRSWFGLVNQLAYAFAQAPVMEP
FRQLLSSKTFFWDETLDELFQASKNKIIELVKDGVKTFETDRPTCLTTDW
SKTGIGFDLTQKHCNCPDPVKPDCGEGHWKLVFAGSRFTTDSESRYAPIE
GEALAVVHGLQRCRMFVMGSPNLTVAVDHKPLIRILNDRELSSIS Run BLAST on NCBI transcript from alignment at sc0000098:445777..446512 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009781 ID=TCONS_00009781|Name=TCONS_00009781|organism=Clytia hemisphaerica|type=transcript|length=736bp|location=Sequence derived from alignment at sc0000098:445777..446512 (Clytia hemisphaerica)
TGTCGACAACACACTACTCTGGGACCACAGCATCGAAGAATCCTTCTGGC
ACACGATAGACTATCTGATCCTCTGTGCTAAAAACGGTATTATTTTCAAC
AAGGACAAATTCCAATTCTGCCAACCTGTTGTCGAATTCGCCGGGTTCGA
ATTATTCGAAGACGGATATCGCCCGCTCAAGAAGATCTTGTCCACCATCA
AAGACTTCCCGACCCCGAAATCCGTGACCGATGTGCGATCCTGGTTCGGA
CTTGTTAACCAACTCGCTTACGCGTTCGCCCAAGCCCCGGTCATGGAACC
GTTCCGCCAACTCCTGTCGTCCAAGACATTTTTCTGGGATGAGACGCTCG
ATGAACTTTTCCAAGCGTCGAAAAACAAGATTATCGAACTTGTAAAGGAC
GGtgtcaaaacgttcgaaacggaTCGCCCAACCTGTCTGACAACGGATTG
GTCGAAAACAGGCATTGGGTTCGACCTCACACAGAAACACTGCAACTGTC
CCGACCCAGTCAAACCAGATTGCGGAGAAGGTCATTGGAAATTGGTCTTT
GCCGGCTCCCGCTTCACCACTGATTCTGAAAGCAGATATGCACCCATCGA
AGGGGAAGCCCTGGCAGTTGTTCACGGACTGCAACGCTGTCGAATGTTCG
TGATGGGATCCCCAAACCTCACCGTAGCAGTCGATCACAAACCCCTGATT
CGGATATTGAACGATCGAGAACTTAGTTCGATATCT Coding sequence (CDS) from alignment at sc0000098:445777..446512 >TCONS_00009781 ID=TCONS_00009781|Name=TCONS_00009781|organism=Clytia hemisphaerica|type=CDS|length=735bp|location=Sequence derived from alignment at sc0000098:445777..446512 (Clytia hemisphaerica)
GTCGACAACACACTACTCTGGGACCACAGCATCGAAGAATCCTTCTGGCA
CACGATAGACTATCTGATCCTCTGTGCTAAAAACGGTATTATTTTCAACA
AGGACAAATTCCAATTCTGCCAACCTGTTGTCGAATTCGCCGGGTTCGAA
TTATTCGAAGACGGATATCGCCCGCTCAAGAAGATCTTGTCCACCATCAA
AGACTTCCCGACCCCGAAATCCGTGACCGATGTGCGATCCTGGTTCGGAC
TTGTTAACCAACTCGCTTACGCGTTCGCCCAAGCCCCGGTCATGGAACCG
TTCCGCCAACTCCTGTCGTCCAAGACATTTTTCTGGGATGAGACGCTCGA
TGAACTTTTCCAAGCGTCGAAAAACAAGATTATCGAACTTGTAAAGGACG
GtgtcaaaacgttcgaaacggaTCGCCCAACCTGTCTGACAACGGATTGG
TCGAAAACAGGCATTGGGTTCGACCTCACACAGAAACACTGCAACTGTCC
CGACCCAGTCAAACCAGATTGCGGAGAAGGTCATTGGAAATTGGTCTTTG
CCGGCTCCCGCTTCACCACTGATTCTGAAAGCAGATATGCACCCATCGAA
GGGGAAGCCCTGGCAGTTGTTCACGGACTGCAACGCTGTCGAATGTTCGT
GATGGGATCCCCAAACCTCACCGTAGCAGTCGATCACAAACCCCTGATTC
GGATATTGAACGATCGAGAACTTAGTTCGATATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009781-exon-sc0000098-1491911889:445777..446512 | TCONS_00009781-exon-sc0000098-1491911889:445777..446512 | Clytia hemisphaerica | exon |
| TCONS_00009781-exon-sc0000098-1510915933:445777..446512 | TCONS_00009781-exon-sc0000098-1510915933:445777..446512 | Clytia hemisphaerica | exon |
| TCONS_00009781-exon-sc0000098-1575043694:445777..446512 | TCONS_00009781-exon-sc0000098-1575043694:445777..446512 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000098 | supercontig | sc0000098:445777..446512 . |
Blast
The following BLAST results are available for this feature:
|
