TCONS_00009710 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009710
Unique NameTCONS_00009710
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length503

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009710 ID=TCONS_00009710|Name=TCONS_00009710|organism=Clytia hemisphaerica|type=transcript|length=503bp
TAATATGGATCACTTACAATGGCTGAAGAAGTATTGCAGGCTGTGCAAAA
CGAAGATAAAATTTGACAAAGCATACACACAGGCAAAAGAATGAAGAGGG
TTTCAAGAGagcatcgttttagtgtatggaatcaCATGCCACAATGAAGA
TGACAATGTTTACCCTAAACTGCTTTGTAAAATCTGTTGCAGAAATCCTA
GTAATGGGAAGAAAAAAGAACCTGCTATTTTCTCTACACACAATGAACAC
TGTGAAATTTGTGCTGTTGAAAATAAGCTGTCTGCTCTAAAGAACCCAAC
TCTCAATAAACATAATCTTATAAAGGTTGTTGCTGCTTTCACAGCATGCT
ATCAGTGGTCACCAGTTCTTTGatgtaatttgtttttttattttaaaggg
ttgaattttaattttcaaaataaatcactTTTATCAAGCGAATTTTATTA
AGGTAAATTGTTTAATATGATTGTTTTAGCACAATATCAAAATCATATAG
AAT
Run BLAST on NCBI

transcript from alignment at sc0000098:261760..262563+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009710 ID=TCONS_00009710|Name=TCONS_00009710|organism=Clytia hemisphaerica|type=transcript|length=804bp|location=Sequence derived from alignment at sc0000098:261760..262563+ (Clytia hemisphaerica)
TAATATGGATCACTTACAATGGCTGAAGAAGTATTGCAGGCTGTGCAAAA
CGAAGATAAAATTTGACAAAGCATACACACAGGCAAAAGAATGAAGAGGG
TTTCAAGAGGTAAGATCTGAACTTATTATATTCCAGACCTTCCCACTCAA
tacaatttataatttttttaaatcaatttatcGATGATTACTTAGTGATT
GATGGTTTATCAATATCAAAATATAGGCTTGATTAATGGTCATCtattgg
aaaaaataaacttaacTTGCTACTTGACTTGCTTGCAAGTAGGAAAGAAA
TTATGAAGATATGATTCGTTATTAATTCATGAGTTGTTTCTGTATTTTTT
AGCATTATTGTGAAAAAAGTATATACTGTAGCTTCTTTATGaactatttt
tctattttagagcatcgttttagtgtatggaatcaCATGCCACAATGAAG
ATGACAATGTTTACCCTAAACTGCTTTGTAAAATCTGTTGCAGAAATCCT
AGTAATGGGAAGAAAAAAGAACCTGCTATTTTCTCTACACACAATGAACA
CTGTGAAATTTGTGCTGTTGAAAATAAGCTGTCTGCTCTAAAGAACCCAA
CTCTCAATAAACATAATCTTATAAAGGTTGTTGCTGCTTTCACAGCATGC
TATCAGTGGTCACCAGTTCTTTGatgtaatttgtttttttattttaaagg
gttgaattttaattttcaaaataaatcactTTTATCAAGCGAATTTTATT
AAGGTAAATTGTTTAATATGATTGTTTTAGCACAATATCAAAATCATATA
GAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005428XLOC_005428Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009710-exon-sc0000098-1491911889:261760..261868TCONS_00009710-exon-sc0000098-1491911889:261760..261868Clytia hemisphaericaexon
TCONS_00009710-exon-sc0000098-1510915933:261760..261868TCONS_00009710-exon-sc0000098-1510915933:261760..261868Clytia hemisphaericaexon
TCONS_00009710-exon-sc0000098-1575043694:261760..261868TCONS_00009710-exon-sc0000098-1575043694:261760..261868Clytia hemisphaericaexon
TCONS_00009710-exon-sc0000098-1491911889:262170..262563TCONS_00009710-exon-sc0000098-1491911889:262170..262563Clytia hemisphaericaexon
TCONS_00009710-exon-sc0000098-1510915933:262170..262563TCONS_00009710-exon-sc0000098-1510915933:262170..262563Clytia hemisphaericaexon
TCONS_00009710-exon-sc0000098-1575043694:262170..262563TCONS_00009710-exon-sc0000098-1575043694:262170..262563Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000098supercontigsc0000098:261760..262563 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.117675	0	0	0.352275	0	0.660826	0	0.217635	0.125958	0	0	0.510564	0.942054	0	0	0	0	0	0	0	0	0	0	1.77439	3.32827	0.184362	0	0.155864	0.202477
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009710 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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