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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009698 ID=TCONS_00009698|Name=TCONS_00009698|organism=Clytia hemisphaerica|type=transcript|length=626bp
GGAATTGTGATTTTATTACTTCGCATTTTGTGATACCTTCATGTATGTAA
ATGACAGTCGTTAAAGTTTATACTGCTGTTTTattaatgttttgtttatt
attgttttgatgatGTATCTTTTTCCTCGTTGGAAGTGTCATGTATTTTG
TATTACTTGGTGAAAAATTGATTGTTgatgaaaattgtatcatgtTTGGT
GTAGACATGGGTTCAACTGAAGAGTGGAAGAAAAATTGCGATTGTATCGA
TCAAAATAACTCGATTATATCGAATCAATATCGAAAAGATCGAAGATTGT
CATTATTGTTTCGATTAAAGTATGTCCAACAGTTGAGAAAATGTGCTgta
aaaatgtttaaagttaATGCAATTCGCGATCACCTTCTACAGAAAACGAA
CAATGGAGTCTCCAAATCTTCAACATCATCCAGTCTAGCTGACGATGATT
CTGAAGGCACAGAGGCTCACCAAggtaatttttatttatgtcATCTCGaa
agtactttaatgggataaactttcgcggggattaaatttcgcggatttcg
cagatttgggtgtcatccgcgaaattaagtcccaatggaaatttggaagg
gcctcacccgcgaaatatttctaaac Run BLAST on NCBI protein sequence of TCONS_00009698-protein >TCONS_00009698-protein ID=TCONS_00009698-protein|Name=TCONS_00009698-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
MYFVLLGEKLIVDENCIMFGVDMGSTEEWKKNCDCIDQNNSIISNQYRKD
RRLSLLFRLKYVQQLRKCAVKMFKVNAIRDHLLQKTNNGVSKSSTSSSLA
DDDSEGTEAHQGNFYLCHLESTLMG Run BLAST on NCBI transcript from alignment at sc0000098:111103..115890+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009698 ID=TCONS_00009698|Name=TCONS_00009698|organism=Clytia hemisphaerica|type=transcript|length=4788bp|location=Sequence derived from alignment at sc0000098:111103..115890+ (Clytia hemisphaerica)
GGAATTGTGATTTTATTACTTCGCATTTTGTGATACCTTCATGTATGTAA
ATGACAGTCGTTAAAGTTTATACTGCTGTTTTattaatgttttgtttatt
attgttttgatgatGTATCTTTTTCCTCGTTGGAAGTGTCATGTATTTTG
TATTACTTGGTGAAAAATTGATTGTTgatgaaaattgtatcatgtTTGGT
GTAGACATGGGTTCAACTGAAGAGTGGAAGAAAAATTGCGATTGTATCGA
TCAAAATAACTCGATTATATCGAATCAATATCGAAAAGATCGAAGATTGT
CATTATTGTTTCGATTAAAGTATGTCCAACAGTTGAGAAAATGTGCTgta
aaaatgtttaaagttaATGGTTAGTGTCTCATTTTTTgtgatacacccct
gtctcacagccccggtgaaacccctgtctcacagccccggtggaacaaAA
AATTTCTACCATATCCAAATGATGggagatagaaattctattgtttcaag
ttAAAAAACCTAGTGGGTATGATTTTGGAGTGCATTTTTCccattgaatt
tcgaataggGGTGAGATCAGATTTGATTCCCCTGTGAGGTTGAAATTAGA
GgttatttttcccaccggggactaAATTTTAGGTAAAGTTTCCAGTCGGG
CTGgcgtcccagcgggtctgtgacataccgtaagttggtctaagtCGACA
TCCCTCCACTAATtgcgacaccctttttatcagctgaaattgatagaaag
gtttgaaactgtttttcttggcttactggtcacagaggaataatcctttt
tcaatcagtgattcaaactttcattttattcctgtctctaaagaagggtg
tcggaattagacgaggggtgtcgatattagaccaagttacggtacaggtg
tgttataatttttttttgcctgttCAAACCTGAGTATGGAAAATCTATTT
TGTACTTACGGCTTACTATCCAAAATTTAGTCTGGATATTCATGCTGTTA
GCCTGGATATTCAAGCTTTAAATTTCAGAAAACTAAAATTCTAATCCAGG
CTATGCAAAAGTCCGCTCGACAATCAAAGGCTTTTCTGAGCACTGATTGG
TTTATTATTTGGCTCGATTACATCATAAttttgagtttcaaccaatcaga
ttgatttgattgtttaGCGGGTAATCGGATAGTTCGGGATAGTTAGCCTT
AAGTgtaatattttggcctttattCACTTCAGTCCTCATAGCTTAGACGA
CTATGTTTCCAGTTTCCAGGGAAGATCATTTTAGTATTCGAGTTATAGGG
TGCAAAAAGTGTTTCGtcaaatttttcttcagaaaaaagactttttaaag
ATAACCTAAGATAACCTAATAATTCGATTTTTCAAAGATGATCCAATTTC
AAATACCTGAAAATGTAAGATTTGTCACCACTATTGTAATGGTGACTCAT
TGTGTCACAAGACACACGCAACAATCAAAGTGTACTGTAAATCCCTATCT
Tcagaaaattcaaagaaatccaaaaattgatgaatatccagctggcacac
aacgttggttcaacgttcatctaacgttatatggacgttatgaacattag
ataaacgttaaaacaacatgATAAGTATCAATCAGGTGTGCCGGTCGAAA
CACAGATAATCTGCAGTGGATTTAAGTATATTATCCTGTCAGAAATAAAA
TGTGGTTTTCCCCCTAATTTcatgctgacgtcatcgaaaatcTCTAATAA
GAAATGAGACTCACTTCTATCGAAAGTCTCTAAATAAACTTTTTACAACA
CCGTTAAGTACGGTTTTATAACGACATCATGccgtcaaaaaaataaaatt
gacgtgCGACGCTCAGCTGTAAAAACCGACTGTTTACTTTTCCTTTGCTA
TAGAAACGACGAATATTGTTACCTAGGAGATAATAAACTAATCAAATGAG
ATTTTATTGTTCGAGTTTTATTAATGACCTCATAAAACAATAGTTCTGTA
ATTAATTCTAACCTCAATTGATTGATATTCAATAAAATGCAAATTTACTA
CCATTTCTCAATGATTACGACTataatatacacgtttttttataagaacg
tccaatttttttgaaaccttcggatgttcttaactttatgAGTTTtcagt
ctaaaaatgttcttagcatattcttattttGACTGCTTTCTGTGTATTTT
TGTCCATCTTACTAAAGAAATCtatctgcaaagccttaaaatgttcttaa
cttgttcttaatattttggtcatagaagccttatgttcttataaaaatac
gtATACAAATTAAACACTATTTCTCAATAATTACGATCGTGATATATTGC
TCTGCTTTAAGTTCCTTGTGCGCTTACTTCATTTTGCAATATCGCATATT
TAGATCTTAATTAAACTGAATTATTTGATAATTACTTACACCCATTCAAT
ATATCACATTTTTCTAGAGAACATGTCAAGTAAAAAAACTACCTATCGCA
ATGTATTACACTATAGCCCTTGTGTTTATTAATTGTTTTTTGGTTGGGTT
TTCTGGACATTACATTTTAGTCATGTGATGAAAAATTCTAGTCTTTGAGA
GTCAAATAAGTAAAATATATATTCTCCGGGGTGTCCGGGGGCCGAAGACG
TCATTTTTGGTATAATTACCAAAAAATGACGTCTTCGAAAGCTCACTAAC
CTCCAGTTAATTTGGAACCCTTTACTTATTCTGTCTTAAAAAAAAGGTAT
AGTTGATTCAAATTGATTGCACAGTGTTTCGAGAGAGCACTCGACCCAGC
ACAACATGTGCCTTTCGAAATATTTccattttaaattctaaaagaTTAAT
TATGTACCCTAATCCGCTATTTCCATACCTTTCAGATTTTCACAAGACTT
GATCCTGAAGActtatactctcgggtacctaatNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNccccccccccccccggctattaggtacccgagagtacc
acATTTTATCTCTAattgcacgttttttttataataacatccaaatttct
gaagccttcgaatgttcttaatttttccagtcttaagcctgaaaatgctc
ttaaaattttaattttgtgagtattttttttgtcatttcctAAGGAATta
agtgttttagagtctttgaaacctgaaattatttttaacttgttcttaat
atttcagcCATCAAAaacttatattcttatatagtttgttctcgtTAAAG
AATACgtgtaattttttcaaattcgtaCGATCTCTGCAGCGGATTCCGAA
CGTCAGAACTTTGCACGGGTGAACGAAAATACGTCACCATACCTATCAAT
AGGAAATTCTCTGAATGTGTAGACCAGCAGGGATGTCGTAGGCTTTGATC
ACATACATATATAtaacaagaaaaacaaatagAGATTTTAACCAATTGAA
AGATCGTTTTGAGTCAAGAGTGTCAggatcaaaaaattgattttcgaAGG
ATTttgtggtgttttttttttatcatgGAAGTTGAAACTTGTGACTGTTC
GGCAACGGCTAAACATTTAGCCCGGAAACTTTTAGGTAATCTTTTCAAAA
CTCATTTTCAATGTTTGGAAATGTTTTTCCGGATCAAAATCGAGTAATAT
CTTTTTTTCAGTactcaaaaaatgttgttttttgctATTTCCCCGATAGC
TTGATAGTAATTTTGGGTTATATCATAGTAGTTAAACTTTATAATTTAGG
GAAGACCCACTTccgaatatctttccaacgtcTGCAATATCCAGCTGTcg
aaaagtgataaaaaatttttttgaaggttTCAGAAAATTTGCTTTAAAGT
AGAATATGAGAAATTTCGTCATTAAATTGAATACATTTGGTACATTTTGA
GTTATCAAGATGTTTTGGTTTTCCACAAAGATTAGAGTTTGTCCTAACAT
GTAATTAAAATGCTCATTAATGACCCATTAATGATCCAGTGACTCAATGA
TAAATTAATCTAATTTATCCTATAGTCCTTACACCAAAGtttcatatttt
ttgaaaatcactttTGAATTTGATCAAAAATTTTATGATATTTAAGTACa
gcggagtctccataactcgaacacgcacagggaacacaaatttgttcgag
ttaaagaaatatCGAGTTACAGAGATTGGTTTATAAGGTACCGTCAACTA
AAATGAGAAACAAGAATCCTTGTTTGAGTTGAGGAGACATTCGATTTATA
AAGGATCATGGTAAAGTGGCTCCATtgtattagcgaggttaagcaagtgt
ttattttaatcgtaaagtgcgataccgaAGGCCTGTACAttgccaaagca
aaccatgcaagtgaaatcttatgtacagacctacgatatcgcattgaacg
gtctaaataaacacttgcttaacctcgctctATTATAACCAGAAAGATTT
TGTTCTAAGAATTCTCTTTTTTTCACTTCAGCAATTCGCGATCACCTTCT
ACAGAAAACGAACAATGGAGTCTCCAAATCTTCAACATCATCCAGTCTAG
CTGACGATGATTCTGAAGGCACAGAGGCTCACCAAggtaatttttattta
tgtcATCTCGaaagtactttaatgggataaactttcgcggggattaaatt
tcgcggatttcgcagatttgggtgtcatccgcgaaattaagtcccaatgg
aaatttggaagggcctcacccgcgaaatatttctaaac Coding sequence (CDS) from alignment at sc0000098:111103..115890+ >TCONS_00009698 ID=TCONS_00009698|Name=TCONS_00009698|organism=Clytia hemisphaerica|type=CDS|length=756bp|location=Sequence derived from alignment at sc0000098:111103..115890+ (Clytia hemisphaerica)
ATGTATTTTGTATTACTTGGTGAAAAATTGATTGTTgatgaaaattgtat
catgtTTGGTGTAGACATGGGTTCAACTGAAGAGTGGAAGAAAAATTGCG
ATTGTATCGATCAAAATAACTCGATTATATCGAATCAATATCGAAAAGAT
CGAAGATTGTCATTATTGTTTCGATTAAAGTATGTCCAACAGTTGAGAAA
ATGTGCTgtaaaaatgtttaaagttaATGCAATTCGCGATCACCTTCTAC
AGAAAACGAACAATGGAGTCTCCAAATCTTCAACATCATCCAGTCTAGCT
GACGATGATTCTGAAGGCACAGAGGCTCACCAAggtaatttttatttatg
tcATCTCGaaagtactttaatgggataaATGTATTTTGTATTACTTGGTG
AAAAATTGATTGTTgatgaaaattgtatcatgtTTGGTGTAGACATGGGT
TCAACTGAAGAGTGGAAGAAAAATTGCGATTGTATCGATCAAAATAACTC
GATTATATCGAATCAATATCGAAAAGATCGAAGATTGTCATTATTGTTTC
GATTAAAGTATGTCCAACAGTTGAGAAAATGTGCTgtaaaaatgtttaaa
gttaATGCAATTCGCGATCACCTTCTACAGAAAACGAACAATGGAGTCTC
CAAATCTTCAACATCATCCAGTCTAGCTGACGATGATTCTGAAGGCACAG
AGGCTCACCAAggtaatttttatttatgtcATCTCGaaagtactttaatg
ggataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009698-exon-sc0000098-1491911889:111103..111471 | TCONS_00009698-exon-sc0000098-1491911889:111103..111471 | Clytia hemisphaerica | exon |
| TCONS_00009698-exon-sc0000098-1510915933:111103..111471 | TCONS_00009698-exon-sc0000098-1510915933:111103..111471 | Clytia hemisphaerica | exon |
| TCONS_00009698-exon-sc0000098-1575043694:111103..111471 | TCONS_00009698-exon-sc0000098-1575043694:111103..111471 | Clytia hemisphaerica | exon |
| TCONS_00009698-exon-sc0000098-1491911889:115634..115890 | TCONS_00009698-exon-sc0000098-1491911889:115634..115890 | Clytia hemisphaerica | exon |
| TCONS_00009698-exon-sc0000098-1510915933:115634..115890 | TCONS_00009698-exon-sc0000098-1510915933:115634..115890 | Clytia hemisphaerica | exon |
| TCONS_00009698-exon-sc0000098-1575043694:115634..115890 | TCONS_00009698-exon-sc0000098-1575043694:115634..115890 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000098 | supercontig | sc0000098:111103..115890 + |
Blast
The following BLAST results are available for this feature:
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