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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009678 ID=TCONS_00009678|Name=TCONS_00009678|organism=Clytia hemisphaerica|type=transcript|length=1346bp
atttgaagaaaaagtttgaagaaGCACTATCAAAATTGTTTTGATCATTT
GAAATATAAAAGTGGCTGTAATGGTTTTAgatcaattttgataaaatatg
ttttaaactattctaaaaataatataaaattctACTGGGTGACCCCAAAA
AAGTGTAAATAGGAAAGGTAAAATTAATTTCAGcatatattattttaaaa
tttggttCAGTACTTCTCTAGGTTTTTCTTGAAGTcagaattcacttttt
tttgggTCACCCTGTTGATGgcacaatcaaagaaaaaaaagttgagtTGC
TTTGTTGGTGAGAgattaaatgaaaaatgtgGTTTGACTTGGTTTGGATC
TAATGATAGTAATTCTCTTCCTGTAAACTTTGGTGAGTGTCGTCAGGATC
CTACCACCCATCTTTCATCATTGGGATTCTCagatgaaacaatctttcac
TGCCCAAACACCAATGAACAATGGCTTATCATGCATCGTCTTCAATTTAC
AATCCCAGATGAGGCGCTAATATGCCCAAAGCACCNTCATCATTGGGATT
CTCagatgaaacaatctttcacTGCCCAAACACCAGTGAACAATGGCTTA
TCATGCATCGTCTTCAATTTACAATCCCAGATGAGGCGCTAATATGCCCA
AAGCACCGATTAAAATTTGGATTAGGATGGAAACCTGAAGTGTCATGCCA
ATATCCCAGCCAcaagaaatcaaaattgaaagcAAAGAATACGCGCAAAA
TACCAATTTCAGCAGCAGCACAGTGCCACCTTCTCTTTTCTAGTGCTGGA
GAGAAAACAGTCATTCAAGTTGGTTCCAAATGGTGCAGTAGTTGTCGAGT
CAAATACCATTCCTCTTTAatggaacaaaacaaaatagacCTAGGTCATA
GGTGTTGTCTATATGTTGTCTATACCTAAATGCATCTATTGTTTCAACAG
AACCAGAACCTGCTGACAGTGATTATGAACCTGAGCCTCAATATTCCgaa
aaagaaatcttcaatCGATCCATGAGTAGCATGTCAAGTGAATGGGAGCC
ATTGACATTTCAACTACATAAAGACTTTGATGACTTGGATGAAAAGAACC
AGAAAATGCTTGTCAGAAAAAGTTTATCAGCCATTGACATCGTGTTTGAA
TCAATTGCACCAGGCCAagcagaaaaattgaaaaaagcatGTGCCAATCC
AACACCCGACACCTATCTTACCGAAGCACTTCAGCACTTTGCGAAaataa
atttgacgtcaatcagAAAGGTTGTGCTCttcgtttttccaaaaaaatgg
agaatttttaataaaattacaaaaaatggaaaaaacaaccaaattt Run BLAST on NCBI protein sequence of TCONS_00009678-protein >TCONS_00009678-protein ID=TCONS_00009678-protein|Name=TCONS_00009678-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
MPKAXSSLGFSDETIFHCPNTSEQWLIMHRLQFTIPDEALICPKHRLKFG
LGWKPEVSCQYPSHKKSKLKAKNTRKIPISAAAQCHLLFSSAGEKTVIQV
GSKWCSSCRVKYHSSLMEQNKIDLGHRCCLYVVYT Run BLAST on NCBI transcript from alignment at sc0000097:625595..626940 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009678 ID=TCONS_00009678|Name=TCONS_00009678|organism=Clytia hemisphaerica|type=transcript|length=1346bp|location=Sequence derived from alignment at sc0000097:625595..626940 (Clytia hemisphaerica)
aaatttggttgttttttccattttttgtaattttattaaaaattctccat
ttttttggaaaaacgaaGAGCACAACCTTTctgattgacgtcaaatttat
tTTCGCAAAGTGCTGAAGTGCTTCGGTAAGATAGGTGTCGGGTGTTGGAT
TGGCACatgcttttttcaatttttctgctTGGCCTGGTGCAATTGATTCA
AACACGATGTCAATGGCTGATAAACTTTTTCTGACAAGCATTTTCTGGTT
CTTTTCATCCAAGTCATCAAAGTCTTTATGTAGTTGAAATGTCAATGGCT
CCCATTCACTTGACATGCTACTCATGGATCGattgaagatttctttttcG
GAATATTGAGGCTCAGGTTCATAATCACTGTCAGCAGGTTCTGGTTCTGT
TGAAACAATAGATGCATTTAGGTATAGACAACATATAGACAACACCTATG
ACCTAGgtctattttgttttgttccatTAAAGAGGAATGGTATTTGACTC
GACAACTACTGCACCATTTGGAACCAACTTGAATGACTGTTTTCTCTCCA
GCACTAGAAAAGAGAAGGTGGCACTGTGCTGCTGCTGAAATTGGTATTTT
GCGCGTATTCTTTgctttcaattttgatttcttgTGGCTGGGATATTGGC
ATGACACTTCAGGTTTCCATCCTAATCCAAATTTTAATCGGTGCTTTGGG
CATATTAGCGCCTCATCTGGGATTGTAAATTGAAGACGATGCATGATAAG
CCATTGTTCACTGGTGTTTGGGCAgtgaaagattgtttcatctGAGAATC
CCAATGATGANGGTGCTTTGGGCATATTAGCGCCTCATCTGGGATTGTAA
ATTGAAGACGATGCATGATAAGCCATTGTTCATTGGTGTTTGGGCAgtga
aagattgtttcatctGAGAATCCCAATGATGAAAGATGGGTGGTAGGATC
CTGACGACACTCACCAAAGTTTACAGGAAGAGAATTACTATCATTAGATC
CAAACCAAGTCAAACcacatttttcatttaatcTCTCACCAACAAAGCAa
ctcaacttttttttctttgattgtgcCATCAACAGGGTGAcccaaaaaaa
agtgaattctgACTTCAAGAAAAACCTAGAGAAGTACTGaaccaaatttt
aaaataatatatgCTGAAATTAATTTTACCTTTCCTATTTACACTTTTTT
GGGGTCACCCAGTagaattttatattatttttagaatagtttaaaacata
ttttatcaaaattgatcTAAAACCATTACAGCCACTTTTATATTTCAAAT
GATCAAAACAATTTTGATAGTGCttcttcaaactttttcttcaaat Coding sequence (CDS) from alignment at sc0000097:625595..626940 >TCONS_00009678 ID=TCONS_00009678|Name=TCONS_00009678|organism=Clytia hemisphaerica|type=CDS|length=408bp|location=Sequence derived from alignment at sc0000097:625595..626940 (Clytia hemisphaerica)
TTAGGTATAGACAACATATAGACAACACCTATGACCTAGgtctattttgt
tttgttccatTAAAGAGGAATGGTATTTGACTCGACAACTACTGCACCAT
TTGGAACCAACTTGAATGACTGTTTTCTCTCCAGCACTAGAAAAGAGAAG
GTGGCACTGTGCTGCTGCTGAAATTGGTATTTTGCGCGTATTCTTTgctt
tcaattttgatttcttgTGGCTGGGATATTGGCATGACACTTCAGGTTTC
CATCCTAATCCAAATTTTAATCGGTGCTTTGGGCATATTAGCGCCTCATC
TGGGATTGTAAATTGAAGACGATGCATGATAAGCCATTGTTCACTGGTGT
TTGGGCAgtgaaagattgtttcatctGAGAATCCCAATGATGANGGTGCT
TTGGGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009678-exon-sc0000097-1491911889:625595..626940 | TCONS_00009678-exon-sc0000097-1491911889:625595..626940 | Clytia hemisphaerica | exon |
| TCONS_00009678-exon-sc0000097-1510915933:625595..626940 | TCONS_00009678-exon-sc0000097-1510915933:625595..626940 | Clytia hemisphaerica | exon |
| TCONS_00009678-exon-sc0000097-1575043694:625595..626940 | TCONS_00009678-exon-sc0000097-1575043694:625595..626940 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000097 | supercontig | sc0000097:625595..626940 . |
Blast
The following BLAST results are available for this feature:
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