TCONS_00009647 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009647
Unique NameTCONS_00009647
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length842

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009647 ID=TCONS_00009647|Name=TCONS_00009647|organism=Clytia hemisphaerica|type=transcript|length=842bp
CCTCCTAGTAACTTTCTTAGGGTCCACGATTATAATTTTAGGATGTTAGT
GTAGCTATTTACCTCTAAAGAAAAGTTTTCATGCTGTTTCACGTGAGTTG
CGTATATCGCCTTGAGAGCATTTTCTTCATTGCTGCTCCCATAAATGATT
GGGTCCAGGAACCACAGTTTATCCTCTTGGGTGATAATGTTGTCTACGGT
TCGGGTTGTTTTTGGCTTAACAACAGCTGCAAGATATTTGAGGTAAGAAC
TTTGCGGTCTTCTATTGTAAACGGAAACTTGATCTCCAACGTCATATTGC
ATCAGGTGAACCTCCTATGTAACTTTCTCAGGGTCCACGATTAGTCCAAC
ACGCTGAAAATCCACTATAGGTCCATGGGCTTGTACGTGGAGAAACAAGG
ACCATACCTAGTATCCTGTTCGCAATATGGGCATAACCATGCTTGTAAAA
GGTTTTATGTTTCCGAACCTTTACCACTTTGTGATTGTCCTCGTTGAGTA
CGTTTTCGTATTCTTTCATGGTCATGTTTGCGCATACCCCAGTTCTAAAA
CGAAATCAATGATGATCAGCGTCAAGTATCAAGGTGGCTTGGGGTTACCA
ACTATTCTTCTGAACGatttttcagttgatttatttcgttttgttaagtt
acgtatattccgccattatggaggcGAATCTGTCAATACGATCTTTTACA
AAAATCGAaagtttgcttccataatgacAGATGCACAATAAAATAAGATA
AATATTAAAACCAGTGAAAATTGGGAACTTTTCTTTTATAACAGCTAAAA
TTATTTCCATAATGAATAAATGAGGGATGTAACGAGATCGAC
Run BLAST on NCBI

transcript from alignment at sc0000097:10080..10921

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009647 ID=TCONS_00009647|Name=TCONS_00009647|organism=Clytia hemisphaerica|type=transcript|length=842bp|location=Sequence derived from alignment at sc0000097:10080..10921 (Clytia hemisphaerica)
GTCGATCTCGTTACATCCCTCATTTATTCATTATGGAAATAATTTTAGCT
GTTATAAAAGAAAAGTTCCCAATTTTCACTGGTTTTAATATTTATCTTAT
TTTATTGTGCATCTgtcattatggaagcaaacttTCGATTTTTGTAAAAG
ATCGTATTGACAGATTCgcctccataatggcggaatatacgtaacttaac
aaaacgaaataaatcaactgaaaaatCGTTCAGAAGAATAGTTGGTAACC
CCAAGCCACCTTGATACTTGACGCTGATCATCATTGATTTCGTTTTAGAA
CTGGGGTATGCGCAAACATGACCATGAAAGAATACGAAAACGTACTCAAC
GAGGACAATCACAAAGTGGTAAAGGTTCGGAAACATAAAACCTTTTACAA
GCATGGTTATGCCCATATTGCGAACAGGATACTAGGTATGGTCCTTGTTT
CTCCACGTACAAGCCCATGGACCTATAGTGGATTTTCAGCGTGTTGGACT
AATCGTGGACCCTGAGAAAGTTACATAGGAGGTTCACCTGATGCAATATG
ACGTTGGAGATCAAGTTTCCGTTTACAATAGAAGACCGCAAAGTTCTTAC
CTCAAATATCTTGCAGCTGTTGTTAAGCCAAAAACAACCCGAACCGTAGA
CAACATTATCACCCAAGAGGATAAACTGTGGTTCCTGGACCCAATCATTT
ATGGGAGCAGCAATGAAGAAAATGCTCTCAAGGCGATATACGCAACTCAC
GTGAAACAGCATGAAAACTTTTCTTTAGAGGTAAATAGCTACACTAACAT
CCTAAAATTATAATCGTGGACCCTAAGAAAGTTACTAGGAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005383XLOC_005383Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009647-exon-sc0000097-1491911889:10080..10921TCONS_00009647-exon-sc0000097-1491911889:10080..10921Clytia hemisphaericaexon
TCONS_00009647-exon-sc0000097-1510915933:10080..10921TCONS_00009647-exon-sc0000097-1510915933:10080..10921Clytia hemisphaericaexon
TCONS_00009647-exon-sc0000097-1575043694:10080..10921TCONS_00009647-exon-sc0000097-1575043694:10080..10921Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000097supercontigsc0000097:10080..10921 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.056047	0	0	0.12417	0.377912	0.238905	0.216172	0.202377	0	0.117003	0	0	0.0745502	0.0774211	0.0636507	0	0.0420743	0.0431248	0.119158	0.0623453	0.162568	0.237885	0.0642624	0	0.300876	0.375934	0	0.082018	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009647 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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