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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009646 ID=TCONS_00009646|Name=TCONS_00009646|organism=Clytia hemisphaerica|type=transcript|length=1954bp
GGGTATCTTTGACGATTATGTCATTTTTAATCCTTTTTAATGTTCAACAT
GCTCTTTTGAAGGTTGTGTAATCAATGAAAATGCAATTATTTTAGCTTTG
GAGAAAGTAAACCATGTCATGTTTGGGCCTGTTGTATTAGGCCCTCTTAT
GTCCTCCAAAAAAGATACGGCACCCGGTAAGTAGCGTTTCAAATTTAACG
AAATCTGCTGGAGCGGAACAGAAACAGCTTACACCAAGGGAATTGAGCAA
AGTTATACCTTTTCCAGGAGTAGTAAAATCTGACTTCTTTTTCTTCACTT
GTGGTGTCCACTTTTTGCATAGGTCTTGATTTTTTGGAAACGAGTGTCAG
GTAAGCTTGTCTACGTGTGGTGGCATTGTTATATTTGACGGTGAAGGTCC
CGATTCGCTGACACCCTAGCCCAGTAAACTATGTCTGGCTTGACGTTGAC
TATTTTTGTTTAATCAAACATAGAATAGCCCGTGAGCTGCATCTACCAGG
GTCGTTTGGTAGATATAAGTTCATATAATATAGGTTCATAGGCTTGTGCG
TTGAGAAACAAGGATTATACCTACTTTTCTGTGTTAATGGTGACATTTTG
CagcggggagggggggggggagtcAGAGACATTGTCCGACGGGTACGAGC
GGTGGTTAAGGCTATGTAGagtttttgataaatgcactgtaacgGTGGCA
ATTTCCGGAAaattctgatatttttttgctttaaaacgaGTCAACAAATT
GAGAAGATTGCACCTTTAGGGTACGACACCTTATAAATAAAGTATAAAGT
ATAAATTTCGGATGTTAGTGTAGCTATTTACCTCTAAACAAGAGTTTTCA
TGCTGTTTCACGTGAGTTGCGTATAGCGCCTTGAGAGCATTTTCTTCATT
GCTTCGCCCATAAATGATTGGGTCCAGGAACCACAGTTTATCCTCTCGGG
TGATAATGTTGTCTACGGTTGGGGTTGTTTTTGGCTTAACAACAGCTGCA
AGAGATTTGAGGTAAGAATTTTGCGGTTTACGGACGGTTTATCTCCACCG
TCATTTTTCGATGACAGGTACACGTAATTAATGCATCAGGTGAACCTCCT
ATGTAACTTTATCAGGCTCCACAATTAGTCCGATACCCTGGAAAAGCCAT
TATACGTTCATGCGTGGAAAAACAAGAACTAAACCTACTTTTTTGTGTTA
TTGGTGACATTTTGCCCGTGGGGGTGGTCACTGTCAGGGTAgtgtttttg
ataaatgcactgtaacgGTGGCAATTTCAGCAATTCcaggaaaaattgta
aattttgaaagaaaattcagatttttttgctataaaagagtcgacaattt
gagaaaattgcaCTGTTAGGGTAGGAATTTCACCGTCtttatgttgttgt
ttttttgctgcactgtaggAGTGCCATTCTTAAAGCGaatttttcgccgc
acataccgtcagtttgGTTCAAGATGCTGTGCGTAAATCCATCGGTAACC
AGTGTTGAGCTGTTGAGCTTTTCATAATAATTTCCAaattgttttcttaa
aaatgtttgattttattatcagataggtccataaaagtatagCTTGTTTT
TAGATAAATAAAATGAAGCCCTACAAAATAAATGTCGTGAGGAGTGAAGT
ATCTAGCGTTGCTAGTTCCTTTTGCTCTTTGCACTTTTGAGGGCATGTTT
AAATACGTTTTTTATTACTACTTCAATTGCTTTCTCGTCCGTTTTGTGAT
TTTGGCATCACACTTGCTGAATGCTGAGTGTCAAGTGTTTTACAACATAC
ATACACCCGCTTTGGACAGCGCGTCCACACCAGTTTCAAGCCCAAAgagc
tagaggcgaaactttaataacccttctcaggcaagagaaattgaatttcc
catccaaaacgcgcatagaacgcccCTTAATCATGATGACAGATTGTACC
TAGG Run BLAST on NCBI transcript from alignment at sc0000097:3448..5401 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009646 ID=TCONS_00009646|Name=TCONS_00009646|organism=Clytia hemisphaerica|type=transcript|length=1954bp|location=Sequence derived from alignment at sc0000097:3448..5401 (Clytia hemisphaerica)
CCTAGGTACAATCTGTCATCATGATTAAGgggcgttctatgcgcgttttg
gatgggaaattcaatttctcttgcctgagaagggttattaaagtttcgcc
tctagctcTTTGGGCTTGAAACTGGTGTGGACGCGCTGTCCAAAGCGGGT
GTATGTATGTTGTAAAACACTTGACACTCAGCATTCAGCAAGTGTGATGC
CAAAATCACAAAACGGACGAGAAAGCAATTGAAGTAGTAATAAAAAACGT
ATTTAAACATGCCCTCAAAAGTGCAAAGAGCAAAAGGAACTAGCAACGCT
AGATACTTCACTCCTCACGACATTTATTTTGTAGGGCTTCATTTTATTTA
TCTAAAAACAAGctatacttttatggacctatctgataataaaatcaaac
atttttaagaaaacaattTGGAAATTATTATGAAAAGCTCAACAGCTCAA
CACTGGTTACCGATGGATTTACGCACAGCATCTTGAACcaaactgacggt
atgtgcggcgaaaaattCGCTTTAAGAATGGCACTcctacagtgcagcaa
aaaaacaacaacataaaGACGGTGAAATTCCTACCCTAACAGtgcaattt
tctcaaattgtcgactcttttatagcaaaaaaatctgaattttctttcaa
aatttacaatttttcctgGAATTGCTGAAATTGCCACcgttacagtgcat
ttatcaaaaacacTACCCTGACAGTGACCACCCCCACGGGCAAAATGTCA
CCAATAACACAAAAAAGTAGGTTTAGTTCTTGTTTTTCCACGCATGAACG
TATAATGGCTTTTCCAGGGTATCGGACTAATTGTGGAGCCTGATAAAGTT
ACATAGGAGGTTCACCTGATGCATTAATTACGTGTACCTGTCATCGAAAA
ATGACGGTGGAGATAAACCGTCCGTAAACCGCAAAATTCTTACCTCAAAT
CTCTTGCAGCTGTTGTTAAGCCAAAAACAACCCCAACCGTAGACAACATT
ATCACCCGAGAGGATAAACTGTGGTTCCTGGACCCAATCATTTATGGGCG
AAGCAATGAAGAAAATGCTCTCAAGGCGCTATACGCAACTCACGTGAAAC
AGCATGAAAACTCTTGTTTAGAGGTAAATAGCTACACTAACATCCGAAAT
TTATACTTTATACTTTATTTATAAGGTGTCGTACCCTAAAGGTGCAATCT
TCTCAATTTGTTGACtcgttttaaagcaaaaaaatatcagaattTTCCGG
AAATTGCCACcgttacagtgcatttatcaaaaactCTACATAGCCTTAAC
CACCGCTCGTACCCGTCGGACAATGTCTCTgactccccccccccctcccc
gctGCAAAATGTCACCATTAACACAGAAAAGTAGGTATAATCCTTGTTTC
TCAACGCACAAGCCTATGAACCTATATTATATGAACTTATATCTACCAAA
CGACCCTGGTAGATGCAGCTCACGGGCTATTCTATGTTTGATTAAACAAA
AATAGTCAACGTCAAGCCAGACATAGTTTACTGGGCTAGGGTGTCAGCGA
ATCGGGACCTTCACCGTCAAATATAACAATGCCACCACACGTAGACAAGC
TTACCTGACACTCGTTTCCAAAAAATCAAGACCTATGCAAAAAGTGGACA
CCACAAGTGAAGAAAAAGAAGTCAGATTTTACTACTCCTGGAAAAGGTAT
AACTTTGCTCAATTCCCTTGGTGTAAGCTGTTTCTGTTCCGCTCCAGCAG
ATTTCGTTAAATTTGAAACGCTACTTACCGGGTGCCGTATCTTTTTTGGA
GGACATAAGAGGGCCTAATACAACAGGCCCAAACATGACATGGTTTACTT
TCTCCAAAGCTAAAATAATTGCATTTTCATTGATTACACAACCTTCAAAA
GAGCATGTTGAACATTAAAAAGGATTAAAAATGACATAATCGTCAAAGAT
ACCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009646-exon-sc0000097-1491911889:3448..5401 | TCONS_00009646-exon-sc0000097-1491911889:3448..5401 | Clytia hemisphaerica | exon |
| TCONS_00009646-exon-sc0000097-1510915933:3448..5401 | TCONS_00009646-exon-sc0000097-1510915933:3448..5401 | Clytia hemisphaerica | exon |
| TCONS_00009646-exon-sc0000097-1575043694:3448..5401 | TCONS_00009646-exon-sc0000097-1575043694:3448..5401 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000097 | supercontig | sc0000097:3448..5401 . |
Blast
The following BLAST results are available for this feature:
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