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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009645 ID=TCONS_00009645|Name=TCONS_00009645|organism=Clytia hemisphaerica|type=transcript|length=1761bp
ATTGCAGATCACTATAGTAAATACAATGATACAGACGATTGGTCAATAGA
CAAGAAGAGTTTTATTACCGTTTCAAAAAGATATGGACCTTTCACAGTTG
ATCGATTTGCTGACAATTgtaacagaaaaacaaaaagatttaatTCAAAA
TTCTATTGTCCTGAAACTGAATCAGTGAATTGTTTTACAAACGATTGGAA
TGGTGAAAATAATTATCTTTGTCCACCAACCAACCTGATTGGCTCAACGA
TAAGACATCTTAAAGTTTGTAATGCTTCTGGGACTCTTATCGTACCAGTT
TGGCCATCAGCTTACTACTGGCCAATCATTTTTCCATGACAAATCATCGC
AAGTTTCgtaaaagacttttttatttttgaacctTTTTATACTTCAATCT
ATAAGGACTCTGTATTTAATGgctatgcaaaatttaagacaATGGCTTTA
AAGATCAAATTTTAAGAAGGAAAGAACGTCAAACTTAATTTCTATTTTAT
CTTCAAGTTTTTCAGTATGTTTAAACAGGTAAAAAGTAACTTAACATTTC
ATTTGAGATGCATACAGGCATTTTATTTATCTAATAAGTAGACACCCCTG
AACGGAGGGCTTTCTTAGCCGACAAAGTAGACACTCCAGGACGGAGGGCT
TTTTAAGCCAACAAAGTAGACACTCCTGTACGGAGGGCTTTTTTAGCCAG
TAAAGTAGATACTTCTGTGAGAAAGGGCTTATCTAGCCGATAAAGTGGAT
ACTCCTAAAGGGAGGGCTTTCAGCcagaaaatcatttttctttttcttca
attgaAATTCCTTTTCAGTAATtaaggaaaatcgaaaattttttaaaacc
aaAGTAACCAGTCTTCTGCGTTTGGTTTTCTCCAAATTAATATTTTAGGC
TCAATATGGTCAACCGTTGCAAACGTGAAAGACGACAGTATTAGAGAGCT
CGCTGTATCTCTTCCCGACGTAGTTATGGCAGCAAGAGCAAAGTCAACGA
CATCGAAATACCAACGAGCATGGTCGAACTGGTTGGATTGGTGTAAAgat
aaagaagaaatcataCCATTTCCAGCAAACCCCTTTTACGTAGCAATCTA
CCTGAACTTCGTATTGAAAACTTCGAAGAAGAGCGGTACATTAACAACAG
CCTTCTACGGCTTAATTAAGACTTTCGATTCAGAATCATTAATGAGCTTA
CGTTTTCTATTGATTTGCTCCTTGGGATTTGAACTATTAACCGTACAGTT
GAAGGACGTAACAATAAAATCAGCCCACCTCGAAATTTTTCTAGAAATCT
CCAAAAGTGATCAGCATCGTGATGGTAATACAATTTACGTTTCAAGAAAT
GagaacaccaaattttgccccGTGAACTTAGCAGAAAGATTTTTATCGCT
TTCAAACGTATCCTTAACATCCAACCCTGAATGTTTTTTAGTTCCAAGAt
tgattaaaatcaaaaaaggtcACAAGATCCATTTATCCGAAGGAATTTCT
TACACGAGAGCaagggaaatatttaaagaGAAAATGGAGGAGGCTGAAAT
TAAAGGCAATTTTGGTTTACATAGTCTTAGATCAGGTGGTGCATCTGCTG
CCGCTCAAAACAACGTCAACGAAAGACTGATTTCAAAACATGGTCGTTGG
GCGTCCGACAGGGCTAGAAATTCATACATAAAAGACTCTATCGAGTACAG
GTTAACAATTAGTCGCCAATTGGGAATCTAATTAACTTTGAAGTATCTTT
AAATTATCATC Run BLAST on NCBI protein sequence of TCONS_00009645-protein >TCONS_00009645-protein ID=TCONS_00009645-protein|Name=TCONS_00009645-protein|organism=Clytia hemisphaerica|type=polypeptide|length=251bp
MAARAKSTTSKYQRAWSNWLDWCKDKEEIIPFPANPFYVAIYLNFVLKTS
KKSGTLTTAFYGLIKTFDSESLMSLRFLLICSLGFELLTVQLKDVTIKSA
HLEIFLEISKSDQHRDGNTIYVSRNENTKFCPVNLAERFLSLSNVSLTSN
PECFLVPRLIKIKKGHKIHLSEGISYTRAREIFKEKMEEAEIKGNFGLHS
LRSGGASAAAQNNVNERLISKHGRWASDRARNSYIKDSIEYRLTISRQLG
I Run BLAST on NCBI transcript from alignment at sc0000097:641927..643831- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009645 ID=TCONS_00009645|Name=TCONS_00009645|organism=Clytia hemisphaerica|type=transcript|length=1905bp|location=Sequence derived from alignment at sc0000097:641927..643831- (Clytia hemisphaerica)
ATTGCAGATCACTATAGTAAATACAATGATACAGACGATTGGTCAATAGA
CAAGAAGAGTTTTATTACCGTTTCAAAAAGATATGGACCTTTCACAGTTG
ATCGATTTGCTGACAATTGTAACAGAAAAACAAAAAGATTTAATTCAAAA
TTCTATTGTCCTGAAACTGAATCAGTGAATTGTTTTACAAACGATTGGAA
TGGTGAAAATAATTATCTTTGTCCACCAACCAACCTGATTGGCTCAACGA
TAAGACATCTTAAAGTTTGTAATGCTTCTGGGACTCTTATCGTACCAGTT
TGGCCATCAGCTTACTACTGGCCAATCATTTTTCCATGACAAATCATCGC
AAGTTTCGTAAAAGACTTTTTTATTTTTGAACCTTTTTATACTTCAATCT
ATAAGGACTCTGTATTTAATGGCTATGCAAAATTTAAGACAATGGCTTTA
AAGATCAAATTTTAAGAAGGAAAGAACGTCAAACTTAATTTCTATTTTAT
CTTCAAGTTTTTCAGTATGTTTAAACAGGTAAAAAGTAACTTAACATTTC
ATTTGAGATGCATACAGGCATTTTATTTATCTAATAAGTAGACACCCCTG
AACGGAGGGCTTTCTTAGCCGACAAAGTAGACACTCCAGGACGGAGGGCT
TTTTAAGCCAACAAAGTAGACACTCCTGTACGGAGGGCTTTTTTAGCCAG
TAAAGTAGATACTTCTGTGAGAAAGGGCTTATCTAGCCGATAAAGTGGAT
ACTCCTAAAGGGAGGGCTTTCAGCCAGAAAATCATTTTTCTTTTTCTTCA
ATTGAAATTCCTTTTCAGTAATTAAGGAAAATCGAAAATTTTTTAAAACC
AAAGTAACCAGTCTTCTGCGTTTGGTTTTCTCCAAATTAATATTTTAGGC
TCAATATGGTCAACCGTTGCAAACGTGAAAGACGACAGTATTAGAGAGCT
CGCTGTATCTCTTCCCGACGTAGTTATGGCAGCAAGAGCAAAGTCAACGA
CATCGAAATACCAACGAGCATGGTCGAACTGGTTGGATTGGTGTAAAGAT
AAAGAAGAAATCATACCATTTCCAGCAAACCCCTTTTACGTAGCAATCTA
CCTGAACTTCGTATTGAAAACTTCGAAGAAGAGCGGTACATTAACAACAG
CCTTCTACGGCATCAGATGGGGTCATCACGTCAACGGACTATACTCTCCT
ACCGACCACCCATTCGTGAGTATGACATACGAAGGTACGTTACGACTTTG
TGAAAAGAAGCCGAAGAATCCTAAAGAACCTATAACGCCAGAAATCCTCA
AACACTTAATTAAGACTTTCGATTCAGAATCATTAATGAGCTTACGTTTT
CTATTGATTTGCTCCTTGGGATTTGAACTATTAACCGTACAGTTGAAGGA
CGTAACAATAAAATCAGCCCACCTCGAAATTTTTCTAGAAATCTCCAAAA
GTGATCAGCATCGTGATGGTAATACAATTTACGTTTCAAGAAATGAGAAC
ACCAAATTTTGCCCCGTGAACTTAGCAGAAAGATTTTTATCGCTTTCAAA
CGTATCCTTAACATCCAACCCTGAATGTTTTTTAGTTCCAAGATTGATTA
AAATCAAAAAAGGTCACAAGATCCATTTATCCGAAGGAATTTCTTACACG
AGAGCAAGGGAAATATTTAAAGAGAAAATGGAGGAGGCTGAAATTAAAGG
CAATTTTGGTTTACATAGTCTTAGATCAGGTGGTGCATCTGCTGCCGCTC
AAAACAACGTCAACGAAAGACTGATTTCAAAACATGGTCGTTGGGCGTCC
GACAGGGCTAGAAATTCATACATAAAAGACTCTATCGAGTACAGGTTAAC
AATTAGTCGCCAATTGGGAATCTAATTAACTTTGAAGTATCTTTAAATTA
TCATC Coding sequence (CDS) from alignment at sc0000097:641927..643831- >TCONS_00009645 ID=TCONS_00009645|Name=TCONS_00009645|organism=Clytia hemisphaerica|type=CDS|length=1512bp|location=Sequence derived from alignment at sc0000097:641927..643831- (Clytia hemisphaerica)
TTAATTAAGACTTTCGATTCAGAATCATTAATGAGCTTACGTTTTCTATT
GATTTGCTCCTTGGGATTTGAACTATTAACCGTACAGTTGAAGGACGTAA
CAATAAAATCAGCCCACCTCGAAATTTTTCTAGAAATCTCCAAAAGTGAT
CAGCATCGTGATGGTAATACAATTTACGTTTCAAGAAATGAGAACACCAA
ATTTTGCCCCGTGAACTTAGCAGAAAGATTTTTATCGCTTTCAAACGTAT
CCTTAACATCCAACCCTGAATGTTTTTTAGTTCCAAGATTGATTAAAATC
AAAAAAGGTCACAAGATCCATTTATCCGAAGGAATTTCTTACACGAGAGC
AAGGGAAATATTTAAAGAGAAAATGGAGGAGGCTGAAATTAAAGGCAATT
TTGGTTTACATAGTCTTAGATCAGGTGGTGCATCTGCTGCCGCTCAAAAC
AACGTCAACGAAAGACTGATTTCAAAACATGGTCGTTGGGCGTCCGACAG
GGCTAGAAATTCATACATAAAAGACTCTATCGAGTACAGGTTAACAATTA
GTCGCCAATTGGGAATCTAAATGGCAGCAAGAGCAAAGTCAACGACATCG
AAATACCAACGAGCATGGTCGAACTGGTTGGATTGGTGTAAAGATAAAGA
AGAAATCATACCATTTCCAGCAAACCCCTTTTACGTAGCAATCTACCTGA
ACTTCGTATTGAAAACTTCGAAGAAGAGCGGTACATTAACAACAGCCTTC
TACGGCTTAATTAAGACTTTCGATTCAGAATCATTAATGAGCTTACGTTT
TCTATTGATTTGCTCCTTGGGATTTGAACTATTAACCGTACAGTTGAAGG
ACGTAACAATAAAATCAGCCCACCTCGAAATTTTTCTAGAAATCTCCAAA
AGTGATCAGCATCGTGATGGTAATACAATTTACGTTTCAAGAAATGAGAA
CACCAAATTTTGCCCCGTGAACTTAGCAGAAAGATTTTTATCGCTTTCAA
ACGTATCCTTAACATCCAACCCTGAATGTTTTTTAGTTCCAAGATTGATT
AAAATCAAAAAAGGTCACAAGATCCATTTATCCGAAGGAATTTCTTACAC
GAGAGCAAGGGAAATATTTAAAGAGAAAATGGAGGAGGCTGAAATTAAAG
GCAATTTTGGTTTACATAGTCTTAGATCAGGTGGTGCATCTGCTGCCGCT
CAAAACAACGTCAACGAAAGACTGATTTCAAAACATGGTCGTTGGGCGTC
CGACAGGGCTAGAAATTCATACATAAAAGACTCTATCGAGTACAGGTTAA
CAATTAGTCGCCAATTGGGAATCTAAATGGCAGCAAGAGCAAAGTCAACG
ACATCGAAATACCAACGAGCATGGTCGAACTGGTTGGATTGGTGTAAAGA
TAAAGAAGAAATCATACCATTTCCAGCAAACCCCTTTTACGTAGCAATCT
ACCTGAACTTCGTATTGAAAACTTCGAAGAAGAGCGGTACATTAACAACA
GCCTTCTACGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009645-exon-sc0000097-1575043694:642671..643831 | TCONS_00009645-exon-sc0000097-1575043694:642671..643831 | Clytia hemisphaerica | exon |
| TCONS_00009645-exon-sc0000097-1575043694:641927..642526 | TCONS_00009645-exon-sc0000097-1575043694:641927..642526 | Clytia hemisphaerica | exon |
| TCONS_00009645-exon-sc0000097-1510915933:642671..643831 | TCONS_00009645-exon-sc0000097-1510915933:642671..643831 | Clytia hemisphaerica | exon |
| TCONS_00009645-exon-sc0000097-1510915933:641927..642526 | TCONS_00009645-exon-sc0000097-1510915933:641927..642526 | Clytia hemisphaerica | exon |
| TCONS_00009645-exon-sc0000097-1491911889:642671..643831 | TCONS_00009645-exon-sc0000097-1491911889:642671..643831 | Clytia hemisphaerica | exon |
| TCONS_00009645-exon-sc0000097-1491911889:641927..642526 | TCONS_00009645-exon-sc0000097-1491911889:641927..642526 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000097 | supercontig | sc0000097:641927..643831 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006310 | DNA recombination |
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| biological_process |
GO:0006310 |
DNA recombination |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
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