TCONS_00009635 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009635
Unique NameTCONS_00009635
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2908

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009635 ID=TCONS_00009635|Name=TCONS_00009635|organism=Clytia hemisphaerica|type=transcript|length=2908bp
ACCTCTCGCGGTTTTTTGTCTTTCCCAAACTCAAAATTTCCCCATTCAAG
GTTTTAATCTGTTAATTGTAATTAGAATTACTTCTAGACTAGAGACGAGG
TTACATTtctggaaaaaatgaaaatactcaAGAGGTAGTCTAAAAGattt
ttataaaaattcaagaagagaaagatgagcatatttttaCGAAACAAATT
GCGTACCTTTGTGGGTGCCACTTCTGGTCTCTTCGCTTACGGTATGTACC
GCCCTGATTGCGACCGCCTCGTCAAACAACCATTGGAAACAAACGCCAAA
TCTGATCACCACGCTTACACGTTACGTAACCGCGTCTGGACGGAACAAGA
GCTGATAGAGAAATATAAAACATGTAAAAATCACGTAGAGCCGTCAAAAA
CATCAGATTACGTCATGTACGGGACGCTCCGTTTCGCGTACAATGCATTT
AACGCCGTTACTTTTTTTGATAAGGACGATCCAACTCCTGAGTCTATGAG
AACAAGGCTTATTCTGCTGGAGTCAATAGCAGGCGTACCGCCCTTCATAA
TGGCTGGTTACCGCCATTTTCGTTCCTTACGAAATCTCTCTTACGACGGG
GGTCGTATATATACTCACCTTGAAGAAGCTGAGAATGAGAGAATGCATTT
AGTGACCTGTATGCAGATCTTCGAAGCAGGTGCACTTATGAAAGGCTCCG
TGTTTTTAGCTCAAATGGTTGCGACACCTATATGCTGGTTTTTATGTCTT
CTGAAGCCACAATGGCTGAATCGAGGTGTTGGCTACTTGGAAGAGCTGGC
GTGTGAAACTTATTCGTTAGTATTGACACATTGCCATAATCCAGAGAAGA
AACTGTATAAAGCATGGCATGATAAACCAGCACCCCCGGTTTCTATAGAT
TACTGGATGTTACCGAAAGATTCTACTTGGCCTGATGTTTTGAGATATAT
TTATGCTGACGAGACGCACCATCGGGATATCAATCATACATTTGCTGATC
TAAGTGTGACGGATTCGAACCCACTTTTACGTGAACATAAAGAGAATTAT
GAGAGGAGTTTAAGTATTGAATCGAATAAGGAAGTATCTCACTGTCCaaa
cgaagaaaaataaacaaaaaaggatGCGAGGGCAAGATATCTTTAAATTT
ACACCGTTAACAATGTACATATACATGCGCATATCAAATcgtaccttatc
gggggaaaaaatgtcgcgggaaagtgacgaaaatgcctctaggtgcagct
aggtgacgaaatttttccccgacgaaaaaaaacccgactaaataaaactc
cgacatttttttcccagaTAAGGTATATCATTACTAAATTTATTTATGCT
TGATTATGGTTGGTTGATAGACTATTTTAATCCTTTACATtccaataaat
gaaaaaatcgaaTGTAATCTCCTTAAATCGAATGATTACCGATTCCGAAG
TTTATGTATTATAAGTTTATGTATTATATAAAATTGATGTATTATAAATT
TATGTATTATAATTTTTAGCTATTTTCATTCTATACACGAAAAAGCACAA
AATACTTTTTGCCTACAAATCATGAAATACATACCTtaaatttattattt
tggactttttttgtaATTGATTATATTTTTAGGATATTTACTACTTAGCA
TTTGAATGTTGTGTCTAATTATTTATTTCCACGCACCAATATTACCTTAT
TGGTACTAGttttagcgggaactaattttagcggtcgaaaaaaaatatcc
gaaaagttgcatttcgcgggttttaattttcgcggttttttcattctgga
attttcgcgggttttaattttcacgattttgccctattttggacaatttt
ttttcattttcctatggatttttcaaatttttcgataaaattggaaaaaa
ttgtgtttcgtgggaattaattttcgcggtttttaactctcaaaattttt
cgcgggttcaaattttgacgaaaaaccgcgaaaaacgctaaaattaattc
ccgcgaaaattagttccaataaggtaatcAAACCTTTTAGGTTTTTTTCT
AGAAATGGGTAGTGCCTGGAAAATTTGTCGAAGGGGAGAAAGTGACCAAC
CGGATGTGTGACACAGGTGTGTAGCAAGATATCACTGCATATCACATTAT
TTCTGCGCTGTAACAGGCTCATTAAacaactttctttttaatttatatat
gcaaaatatatataatttttttttttaatatttatttaaataaagatttt
taaatagaTTTTGAAATCCCCGGTAGAATATAAGTATTCTTCTTCATTTg
tcgaaatttttcgaaattgtacacgctttttttttataaaaatgaatatt
cttaacttttttgggaagatcatcctaaaatattcttacagcattcttag
gttaggatcctaattcagactagatttaacatttagtacattacgtctca
agcataaaatggcatttttgtgaaggagtgagccttacttgggggtaatt
ggcaatttataattgaaaatgctctaaaaatggcattcttagcttgagta
gccaaattccatgaaggtgatattcttagctttttggccattttcatcat
ggacattcttataaagtgtattcttataaaaaaaaagcctGTATTTTTTC
CCAAAGGTTATAGTGctctgaattttcttttaacAGTTCATAATCTGTTG
GTATTGAAGCATTGGTTAAAAAATGACaagcaaaaagaaagaataaGCGC
AGATTAGTTTGCAGTTAAAGCGAAAATCTTATTCAATTCTGTAATTCGAT
TGGTTCTTTTTTTAGTTGCAAGTAATTTTGATTGgctctttttttagttt
tagattCATTATgattatttataaaaatatttcatattatGATGGAGATA
ATACAAAT
Run BLAST on NCBI

transcript from alignment at sc0000097:448780..453069-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009635 ID=TCONS_00009635|Name=TCONS_00009635|organism=Clytia hemisphaerica|type=transcript|length=4290bp|location=Sequence derived from alignment at sc0000097:448780..453069- (Clytia hemisphaerica)
ACCTCTCGCGGTTTTTTGTCTTTCCCAAACTCAAAATTTCCCCATTCAAG
GTTTTAATCTGTTAATTGTAATTAGAATTACTTCTAGACTAGAGACGAGG
TTACATTTCTGGAAAAAATGAAAATACTCAAGAGGTAGTCTAAAAGGTAT
ATAGTTCATTTAATAAAAATATCCTTTATTTCCTTTACTACTTCGCTTTA
TACTAAGAAGCTTTAGACTAGCTATAGATTTTGTTTTATCTAAGACACGT
TACTTTACATTCTCGCTGGAGGTCACTGATGAGATCAAAGGAATTTCATT
GGCATTTTGCTAATACTGTTCTACGAAACTCTTTGTTTATAAGTTAATTA
AATTATTTAATGGTTTCATTTATACTGAGTCAAGAAGTTTGTAAAATGTG
ATCTGTGGAGGAGATCCTATTTATTGAAACATAAATGGAAAGTACACTCC
TCCATAATGCTCATTTTCTAAATTGCTCACTCTCAGACAAATTAATCGTC
TCAGTATAAATAGAACTAATAATGCTAATAAGTAATTTTGCTGACGATAA
TACTCTTTTCTTGCGATCCTTCATTTTTTGTCGTTAAGTACACATTGCAA
GCTGATGTTTTCAGGGCTTTGGAGTGGTTTCAAGCAAACTCCCTCGTATG
GCCAATCCAGAAAAATTTCAGATGATCTTCCTAGGCACAGATCAGACCGA
AGTAGATTTTTTCAATTTTGAGGGAAACCTTGTTTATCCTTCAAAGTCTG
TTAAATTATTAGGAGTTGAAANATGGCCAATCCAGAAAAGTTTCCGATGA
TCTTCCTAGGCACAGATCAGACCGAAGTAGATTTTTTCAATTTTGAGGGA
AACCTTGTTTATCCTTCAAAGTCTGTTAAATTATTAGGAGTTGAAATTGA
TTATAAATTAACATTTAAAAATCATATTTTCAATATTTGTACAATAGTAA
ATAACAAAACGAATGCATTCATGAGGATTAGAAGTTATCTTAATATTGAC
AATGCCCTAAAGGTCGCACCAGCTTAAACGTGGCCATCATGTTACCATTC
ATCAGAGGAACCTTCAAAATCCCATGCGTATGGTCTCCAAATCTCTAAAA
AAAGCTAAATCCAAGTTTCATGTGGTAGTTTTTCAAGATCTTAGATATTC
CTTATAAATTANGAGGTCTCCAAATCTCTAAAAACAAAGCCAAATCCAAG
TTTCATGTGGTAGTTTTTCAAGATCTTAGATATTCCTTATAAATTACAAA
GATGTCCTCTTCTAGAACTTCCTGATGTTCATGGTAAAATTTATGGCACC
TGCCACGCTCGGTTTTCGCTCAATGATATCATGGAATGACCTGCCAGTTG
ATATTAGATTAGCAGACTCTCTTGAAGAAATTACTTGAGAATTTCACAAA
AGAAAATGAAATTCCATGCAACTGCAGGTTATGCCGTGATTAAAAATCTA
TTAGGGATTGTTTAAAACCAACGTGAAATGAAGAAACAAAAAGAAATAAT
TAACATTTCTCATATCTTATATTTTTAGATTTTTATAAAAATTCAAGAAG
AGAAAGATGAGCATATTTTTACGAAACAAATTGCGTACCTTTGTGGGTGC
CACTTCTGGTCTCTTCGCTTACGGTATGTACCGCCCTGATTGCGACCGCC
TCGTCAAACAACCATTGGAAACAAACGCCAAATCTGATCACCACGCTTAC
ACGTTACGTAACCGCGTCTGGACGGAACAAGAGCTGATAGAGAAATATAA
AACATGTAAAAATCACGTAGAGCCGTCAAAAACATCAGATTACGTCATGT
ACGGGACGCTCCGTTTCGCGTACAATGCATTTAACGCCGTTACTTTTTTT
GATAAGGACGATCCAACTCCTGAGTCTATGAGAACAAGGCTTATTCTGCT
GGAGTCAATAGCAGGCGTACCGCCCTTCATAATGGCTGGTTACCGCCATT
TTCGTTCCTTACGAAATCTCTCTTACGACGGGGGTCGTATATATACTCAC
CTTGAAGAAGCTGAGAATGAGAGAATGCATTTAGTGACCTGTATGCAGAT
CTTCGAAGCAGGTGCACTTATGAAAGGCTCCGTGTTTTTAGCTCAAATGG
TTGCGACACCTATATGCTGGTTTTTATGTCTTCTGAAGCCACAATGGCTG
AATCGAGGTGTTGGCTACTTGGAAGAGCTGGCGTGTGAAACTTATTCGTT
AGTATTGACACATTGCCATAATCCAGAGAAGAAACTGTATAAAGCATGGC
ATGATAAACCAGCACCCCCGGTTTCTATAGATTACTGGATGTTACCGAAA
GATTCTACTTGGCCTGATGTTTTGAGATATATTTATGCTGACGAGACGCA
CCATCGGGATATCAATCATACATTTGCTGATCTAAGTGTGACGGATTCGA
ACCCACTTTTACGTGAACATAAAGAGAATTATGAGAGGAGTTTAAGTATT
GAATCGAATAAGGAAGTATCTCACTGTCCAAACGAAGAAAAATAAACAAA
AAAGGATGCGAGGGCAAGATATCTTTAAATTTACACCGTTAACAATGTAC
ATATACATGCGCATATCAAATCGTACCTTATCGGGGGAAAAAATGTCGCG
GGAAAGTGACGAAAATGCCTCTAGGTGCAGCTAGGTGACGAAATTTTTCC
CCGACGAAAAAAAACCCGACTAAATAAAACTCCGACATTTTTTTCCCAGA
TAAGGTATATCATTACTAAATTTATTTATGCTTGATTATGGTTGGTTGAT
AGACTATTTTAATCCTTTACATTCCAATAAATGAAAAAATCGAATGTAAT
CTCCTTAAATCGAATGATTACCGATTCCGAAGTTTATGTATTATAAGTTT
ATGTATTATATAAAATTGATGTATTATAAATTTATGTATTATAATTTTTA
GCTATTTTCATTCTATACACGAAAAAGCACAAAATACTTTTTGCCTACAA
ATCATGAAATACATACCTTAAATTTATTATTTTGGACTTTTTTTGTAATT
GATTATATTTTTAGGATATTTACTACTTAGCATTTGAATGTTGTGTCTAA
TTATTTATTTCCACGCACCAATATTACCTTATTGGTACTAGTTTTAGCGG
GAACTAATTTTAGCGGTCGAAAAAAAATATCCGAAAAGTTGCATTTCGCG
GGTTTTAATTTTCGCGGTTTTTTCATTCTGGAATTTTCGCGGGTTTTAAT
TTTCACGATTTTGCCCTATTTTGGACAATTTTTTTTCATTTTCCTATGGA
TTTTTCAAATTTTTCGATAAAATTGGAAAAAATTGTGTTTCGTGGGAATT
AATTTTCGCGGTTTTTAACTCTCAAAATTTTTCGCGGGTTCAAATTTTGA
CGAAAAACCGCGAAAAACGCTAAAATTAATTCCCGCGAAAATTAGTTCCA
ATAAGGTAATCAAACCTTTTAGGTTTTTTTCTAGAAATGGGTAGTGCCTG
GAAAATTTGTCGAAGGGGAGAAAGTGACCAACCGGATGTGTGACACAGGT
GTGTAGCAAGATATCACTGCATATCACATTATTTCTGCGCTGTAACAGGC
TCATTAAACAACTTTCTTTTTAATTTATATATGCAAAATATATATAATTT
TTTTTTTTAATATTTATTTAAATAAAGATTTTTAAATAGATTTTGAAATC
CCCGGTAGAATATAAGTATTCTTCTTCATTTGTCGAAATTTTTCGAAATT
GTACACGCTTTTTTTTTATAAAAATGAATATTCTTAACTTTTTTGGGAAG
ATCATCCTAAAATATTCTTACAGCATTCTTAGGTTAGGATCCTAATTCAG
ACTAGATTTAACATTTAGTACATTACGTCTCAAGCATAAAATGGCATTTT
TGTGAAGGAGTGAGCCTTACTTGGGGGTAATTGGCAATTTATAATTGAAA
ATGCTCTAAAAATGGCATTCTTAGCTTGAGTAGCCAAATTCCATGAAGGT
GATATTCTTAGCTTTTTGGCCATTTTCATCATGGACATTCTTATAAAGTG
TATTCTTATAAAAAAAAAGCCTGTATTTTTTCCCAAAGGTTATAGTGCTC
TGAATTTTCTTTTAACAGTTCATAATCTGTTGGTATTGAAGCATTGGTTA
AAAAATGACAAGCAAAAAGAAAGAATAAGCGCAGATTAGTTTGCAGTTAA
AGCGAAAATCTTATTCAATTCTGTAATTCGATTGGTTCTTTTTTTAGTTG
CAAGTAATTTTGATTGGCTCTTTTTTTAGTTTTAGATTCATTATGATTAT
TTATAAAAATATTTCATATTATGATGGAGATAATACAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005377XLOC_005377Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009635-exon-sc0000097-1575043694:452924..453069TCONS_00009635-exon-sc0000097-1575043694:452924..453069Clytia hemisphaericaexon
TCONS_00009635-exon-sc0000097-1575043694:448780..451541TCONS_00009635-exon-sc0000097-1575043694:448780..451541Clytia hemisphaericaexon
TCONS_00009635-exon-sc0000097-1510915933:452924..453069TCONS_00009635-exon-sc0000097-1510915933:452924..453069Clytia hemisphaericaexon
TCONS_00009635-exon-sc0000097-1510915933:448780..451541TCONS_00009635-exon-sc0000097-1510915933:448780..451541Clytia hemisphaericaexon
TCONS_00009635-exon-sc0000097-1491911889:452924..453069TCONS_00009635-exon-sc0000097-1491911889:452924..453069Clytia hemisphaericaexon
TCONS_00009635-exon-sc0000097-1491911889:448780..451541TCONS_00009635-exon-sc0000097-1491911889:448780..451541Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000097supercontigsc0000097:448780..453069 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.21891	1.03336	18.8844	27.8001	19.2513	14.4502	13.5537	16.2803	5.25746	12.7845	16.9365	1.17875	4.1186	2.53492	1.53061	1.51428	4.00497	2.18082	3.01408	4.73519	3.43922	3.38113	0.689471	2.56274	9.56604	19.7228	13.1629	4.82855	12.6226	4.81928
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009635 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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