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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009602 ID=TCONS_00009602|Name=TCONS_00009602|organism=Clytia hemisphaerica|type=transcript|length=870bpRun BLAST on NCBI protein sequence of TCONS_00009602-protein >TCONS_00009602-protein ID=TCONS_00009602-protein|Name=TCONS_00009602-protein|organism=Clytia hemisphaerica|type=polypeptide|length=289bp YANAYTQKFVNNLSFCHGLTDQLAYTKWNNLWTLLRRNYKMVEESNIGCVRun BLAST on NCBI transcript from alignment at sc0000097:559750..578364+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009602 ID=TCONS_00009602|Name=TCONS_00009602|organism=Clytia hemisphaerica|type=transcript|length=18615bp|location=Sequence derived from alignment at sc0000097:559750..578364+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000097:559750..578364+ >TCONS_00009602 ID=TCONS_00009602|Name=TCONS_00009602|organism=Clytia hemisphaerica|type=CDS|length=10404bp|location=Sequence derived from alignment at sc0000097:559750..578364+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00009602 vs. Swiss-Prot (Human)
Match: 3HAO (3-hydroxyanthranilate 3,4-dioxygenase OS=Homo sapiens GN=HAAO PE=1 SV=2) HSP 1 Score: 215.698 bits (548), Expect = 1.084e-67 Identity = 108/243 (44.44%), Postives = 164/243 (67.49%), Query Frame = 2
Query: 152 VNVDKWLKENEESFKPPVCNSIMAGGYLKIMFVGGPNVRKDYHMDQGEELFYMLKGDMCLKIMEKGEPKDIHIREGEVFVLPSRIPHSPQRNANTLGLVIERERAD-QWDGLRYYCEDGKTILFQKYFHLRSLVQDFLPVIKEYFASEQYKTGVPIPGTTDEDEEKFKVDRTSTVNTPFLLSEWVKENRKELDNQGKV-LF-EQGEFKVYANGEGNFS--QQNPFESWIWLMNGKCKLQIDGQ 865
+ V W+KEN SF+PPVCN +M LK+MF+GGPN RKDYH+++GEE+FY L+GDM L+++E+G+ +D+ IR+GE+F+LP+R+PHSPQR ANT+GLV+ER R + + DGLRYY D +LF+K+F+ + L P+I+E+F+SEQY+TG PIP + E F + T ++ P L W+ + +EL + LF + E +V A G+G+ +QN + W+W + G + + G+
Sbjct: 5 LGVRAWVKENRGSFQPPVCNKLMHQEQLKVMFIGGPNTRKDYHIEEGEEVFYQLEGDMVLRVLEQGKHRDVVIRQGEIFLLPARVPHSPQRFANTVGLVVERRRLETELDGLRYYVGDTMDVLFEKWFYCKDLGTQLAPIIQEFFSSEQYRTGKPIPDQLLK-EPPFPLS-TRSIMEPMSLDAWLDSHHRELQAGTPLSLFGDTYETQVIAYGQGSSEGLRQN-VDVWLWQLEGSSVVTMGGR 244 The following BLAST results are available for this feature:
BLAST of TCONS_00009602 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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