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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009601 ID=TCONS_00009601|Name=TCONS_00009601|organism=Clytia hemisphaerica|type=transcript|length=1830bp
TTCGAGATTTACCTTTTTGACCTTTACATAAAACTATGGTTCAAATGCCT
TCCCATCAGAAAAATGTCTTGCTCGGGATTTGCTTCAAAAATACAAGGGG
GCGATCATCTTCCTGTTTGTCATCCTATTTATAACAATCTTGCTGGTCAC
ACTATACCTTATGTTAAAGAAAGGcttctgttgttgttgttgcaacAAAG
AGAAAGAGGACGAAGAGAGTCTTTACACTGACCTCGAGCATGATGAAGAA
GACGATGAGATGGAGGGTCATATCCCTCCTCCAAAAGGTGAACTTCTCCA
CAGCGGTGAACATCACTTAGAACCCGAAGAACGTGCCGTAGAGGAGCAGG
AACATCACATTCCGGAGATCATCGTCACCGAAGGTCATTTCGTCCCTGAG
AAGAAGAGCAAGAAAAAACAACTGTCCGGTATGTTGAAACGAATGCGACC
GGGCAAAGGAAAAGTCCGATTTAGCCCGTCTAGTGAACAGATCAGCATGA
TAAGTTCAGAAGGTAGCACCATTACCAGCGATTACGGATCGACCACGAAT
TCCTTACCTATTCACAGATCAGATTCTATGGAGAGTTTCATGTCGGCTGT
TTCGGCCGCTACAACGAACAATATCGATGAGTTTGGAGATGAACTTTCTC
CGAGTCGTTTGCAAGTTTTTTTACATTATGATCCGAAATTATGGACTTTG
ACAGTAGGTGTCAAGCAAGCTGATTGCTTAGTATCGACCACAGGTAGTGC
CATGTATTGGCAAGCACATGTAACAATATTACCCTTTAAAAAACATAGAT
TCAAAACGAAGTATAAGTCGACATCGACACCAATTTTTAATCAGAACTAT
GAAGTAGAAAACATCGCGCAACAAGCCCTCTCACAGCTTTCCGTTCGTTA
TCGGATCTACGGCCGTCCAGGGCGAGGTGGGCGTAAAAAGCTGGCGGGAG
AAACAGAAGTTGAACTTTCACATATAACCCAGATGGAGGATATGATAATA
AAGGACTGGCGTGTTTTGAGGCGTAAAGGTGGACCTTTCATCCGCCATGA
AAGTGAAGTTTAGATGTTTAttttaaattcttatttttgggAGGGCTATA
GTggtatatattttattttctagttttatttttctcgtgttgttttttat
taatgacattttttgAAGGCTTAGTGTAAAGGGCTCTGTCCAGAGAGGAA
CCAGCTTCTAATTTGCAACGAAAAATTTTTCTATTCAGATATATTAATGA
TTACTCAAACTGACTCGGTGAACtctgaagaaaaattaaaaggagCTGCA
TAAAGATGAATCTccctcttttttataaaaattactcATTTTTAATGGGT
TATTCACTGTTATGTTCtattgtattttaatttttttacattttaattta
CAACTTGGGGTATTTTAAGTGAAAAGTACATGGCAAATATGGAGAGATCA
CTTTACTTAGTCAGAGCCCGGAGAACTGGCATAATTTTATAGTAAAGACA
GAGACTTAAGGGGAAGCACAATTTTgacgttttgatttttgaattcagAC
TTTATCTTTTGTTCTCTGATCAGAGACTAGAACAATTATATCATTCTATC
AAAGTTTCCAAACCTGAAGCTTTTACCTGTCGATGTAGAATAATTGGTAG
TAGTATTCTTGTTAGATTTTTTAGTAGCTAAATTAagggagatattttcg
tgtttttctaaccaacattttctttttttaattcatttttataTGTCATC
ATCCATACTTGTAAAAATAAACCATTAATAGTCTACTACGATAATTACAC
ACTACATATGCAGCAATCgtaattcaaaaa Run BLAST on NCBI transcript from alignment at sc0000097:534473..537323+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009601 ID=TCONS_00009601|Name=TCONS_00009601|organism=Clytia hemisphaerica|type=transcript|length=2851bp|location=Sequence derived from alignment at sc0000097:534473..537323+ (Clytia hemisphaerica)
TTCGAGATTTACCTTTTTGACCTTTACATAAAACTATGGTTCAAATGCCT
TCCCATCAGAAAAATGTCTTGCTCGGGGTAAATACTTGTATATTAGTGTT
TCTTTCTGttgcaaaatgaaaattatagtGGAGAAAGCAATTGGTAGGTC
TTACTTTTTGATGAGAAGTTCCAATTTAGAATTGTTtgattttgtatata
ttttcctgaaagaaattaattgttctttttttcttcagccTTGACAAGTT
TTGTTAATTTATATGGGTCTTCTTTCAGAAAAGGATTTCGAAATCTCGAA
CTCTACTCATCTTAAGATCTAGCCACgttgaaagttttctttttgtcaAA
ATTGTTCTCGAATACTCTCACGTCAAAATAAAGTTTTCCAGTTGGCGATT
TCCTGGGACAATACTACCAAATTCTACAAAAAATCGGAATTGGAAATCTA
CCAGAATCTACTATTTTAGTTTTCTCAGATTTTACAAGCACTTTCGTTAT
AAGGAACTTTTAGAATTGACTTTCTAAGGGCCTCTTGCTCCACCTTCTTG
CTCCCTTCAGTGCTCCGTAGAAATTTTTCCATAACTTCACCAGCTTTGAA
GAAAAACAGTTATGAATTCCAAAGGAATCGTATAGTGAGAGAATAAAATT
AAAACGTATATACTACTTGGTCGGGTCCTCTCTTGAACTTGTGAAAATTC
GAAATTCTGTTTTGCTGTTATTCAGACATCTAATTGTAGTGGGCATTTGG
TATTTTGTTTAATGAAAGTGAGTTTCTCTGAACGgaaggatttttttttg
gaactaTTCGTTTGGCTGGTCTATGTTAGTCTAAAGGAAAAAAAAGCTCG
AGCTAAATTTCGTATTTTATCATAAAATTTATGCAGCTGACCTCAATACT
GTTATATATCTTTATATATCTATTGtagaaaaaaaagttctttCGAACTT
AAGTATGACAGTTTAATTTCAATATACAGTGTTGCTCCTTTCCAAATCAG
TGGAATGGGTACGtcaactgtttttctttgagtCAACATACAACATATTC
AACATTATACACTGTAACACTGATGTCTTTTTTCTCTCTCATTTTCAGAT
TTGCTTCAAAAATACAAGGGGGCGATCATCTTCCTGTTTGTCATCCTATT
TATAACAATCTTGCTGGTCACACTATACCTTATGTTAAAGAAAGGcttct
gttgttgttgttgcaacAAAGAGAAAGAGGACGAAGAGAGTCTTTACACT
GACCTCGAGCATGATGAAGAAGACGATGAGATGGAGGGTCATATCCCTCC
TCCAAAAGGTGAACTTCTCCACAGCGGTGAACATCACTTAGAACCCGAAG
AACGTGCCGTAGAGGAGCAGGAACATCACATTCCGGAGATCATCGTCACC
GAAGGTCATTTCGTCCCTGAGAAGAAGAGCAAGAAAAAACAACTGTCCGG
TATGTTGAAACGAATGCGACCGGGCAAAGGAAAAGTCCGATTTAGCCCGT
CTAGTGAACAGATCAGCATGATAAGTTCAGAAGGTAGCACCATTACCAGC
GATTACGGATCGACCACGAATTCCTTACCTATTCACAGATCAGATTCTAT
GGAGAGTTTCATGTCGGCTGTTTCGGCCGCTACAACGAACAATATCGATG
AGTTTGGAGATGAACTTTCTCCGAGTCGTTTGCAAGTTTTTTTACATTAT
GATCCGAAATTATGGACTTTGACAGTAGGTGTCAAGCAAGCTGATTGCTT
AGTATCGACCACAGGTAGTGCCATGTATTGGCAAGCACATGTAACAATAT
TACCCTTTAAAAAACATAGATTCAAAACGAAGTATAAGTCGACATCGACA
CCAATTTTTAATCAGAACTATGAAGTAGAAAACATCGCGCAACAAGCCCT
CTCACAGCTTTCCGTTCGTTATCGGATCTACGGCCGTCCAGGGCGAGGTG
GGCGTAAAAAGCTGGCGGGAGAAACAGAAGTTGAACTTTCACATATAACC
CAGATGGAGGATATGATAATAAAGGACTGGCGTGTTTTGAGGCGTAAAGG
TGGACCTTTCATCCGCCATGAAAGTGAAGTTTAGATGTTTAttttaaatt
cttatttttgggAGGGCTATAGTggtatatattttattttctagttttat
ttttctcgtgttgttttttattaatgacattttttgAAGGCTTAGTGTAA
AGGGCTCTGTCCAGAGAGGAACCAGCTTCTAATTTGCAACGAAAAATTTT
TCTATTCAGATATATTAATGATTACTCAAACTGACTCGGTGAACtctgaa
gaaaaattaaaaggagCTGCATAAAGATGAATCTccctcttttttataaa
aattactcATTTTTAATGGGTTATTCACTGTTATGTTCtattgtatttta
atttttttacattttaatttaCAACTTGGGGTATTTTAAGTGAAAAGTAC
ATGGCAAATATGGAGAGATCACTTTACTTAGTCAGAGCCCGGAGAACTGG
CATAATTTTATAGTAAAGACAGAGACTTAAGGGGAAGCACAATTTTgacg
ttttgatttttgaattcagACTTTATCTTTTGTTCTCTGATCAGAGACTA
GAACAATTATATCATTCTATCAAAGTTTCCAAACCTGAAGCTTTTACCTG
TCGATGTAGAATAATTGGTAGTAGTATTCTTGTTAGATTTTTTAGTAGCT
AAATTAagggagatattttcgtgtttttctaaccaacattttcttttttt
aattcatttttataTGTCATCATCCATACTTGTAAAAATAAACCATTAAT
AGTCTACTACGATAATTACACACTACATATGCAGCAATCgtaattcaaaa
a
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009601-exon-sc0000097-1491911889:534473..534549 | TCONS_00009601-exon-sc0000097-1491911889:534473..534549 | Clytia hemisphaerica | exon |
| TCONS_00009601-exon-sc0000097-1510915933:534473..534549 | TCONS_00009601-exon-sc0000097-1510915933:534473..534549 | Clytia hemisphaerica | exon |
| TCONS_00009601-exon-sc0000097-1575043694:534473..534549 | TCONS_00009601-exon-sc0000097-1575043694:534473..534549 | Clytia hemisphaerica | exon |
| TCONS_00009601-exon-sc0000097-1491911889:535571..537323 | TCONS_00009601-exon-sc0000097-1491911889:535571..537323 | Clytia hemisphaerica | exon |
| TCONS_00009601-exon-sc0000097-1510915933:535571..537323 | TCONS_00009601-exon-sc0000097-1510915933:535571..537323 | Clytia hemisphaerica | exon |
| TCONS_00009601-exon-sc0000097-1575043694:535571..537323 | TCONS_00009601-exon-sc0000097-1575043694:535571..537323 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000097 | supercontig | sc0000097:534473..537323 + |
Blast
The following BLAST results are available for this feature:
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