TCONS_00009584 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009584
Unique NameTCONS_00009584
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1778

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009584 ID=TCONS_00009584|Name=TCONS_00009584|organism=Clytia hemisphaerica|type=transcript|length=1778bp
ATTGTATTAAATAAGTCTTAATATTACCCAAAAAGGAGTAAAAAATTTTA
TAGTTATATTGATACTTTTTGTTCAGATTTAGACCAAGTAAGAAATTGAT
CAATAACTAAATGAGGTAGTTTGGACTTGTTTCAAAGAATTTGTCGAGGC
TGTGGATTTTTGGTTGGCAGCACAAGATGGAGACCAcacttgttttgaaa
atatttggagcaattattttgttttttgtcacttttctttttacattgCT
TCCATACAAATTAAAGCAGATGCGTGCAgacaaattgaaaattatttctt
gcttcTGCGGTGGTCTCTTTCTTGGGTTAAGTTTCCTTCACTTGATACCA
GATACTTTGCGAGGATTTTTTGGTAGTGAAATTTTACTCAAACTCCAAAG
TAAATATCCTTTTGGAGAGTTGGTAATCATATTGGGAATGATCTTGGTTC
TGTCTGCAGAAAAGTTTGCTAGCCTCATCCAAATCAACCAccaggaaaaa
aaaacaaaatgtgatGGCAGTGAAAGTTGTTGCCAAGAAGAATGTGCCGT
ACAAGGAGTTCCAAATGAGAAAACACCACTTTTCAAGCAACTGAGAAAAC
CATATGTGGAAGATCAGACAGTAGAAGCAGTCCCATCAAACGAGAAAGCT
CAGGAAGCTGGGACTACTGGAGAGGCTGATAAAATGGATTCTGATGATGA
TTCTTCAATATCAATTGAGGATAAGAAAACTGTTTTATTTACACAAAGTA
ACCAGTATAGAAAACTATCAACTACATCAAACACTTCAATGGGAAacaaa
attcaacttttaaaaatcagaaCCATCTGTTTGGTTATCGCACTCATGAT
TCATTCCTTGTTCGAAGGTTTGACAGTTGGTTTGCAGCCTAATGCAACAG
GTGTCTGTGTGCTGGTTGCTCTTTTGTTGTTCCATAAATCGTTAGTTGGA
TTCTCATTGGGTATTGCTTTGGTCAATGATAAAAGTGATCTGAGATCCTT
CCAAAAGAAAGCTGCACTCTTCTCTATTGCATCCCCGATTGGAGCTATCA
TTGGCATTATCATTTTCAGCGTTAAATCAAGCTTTGTAAGTGACGAAGTG
GTTGTTGTGCTCACAGGGCTCTCCACTGGAACTTTCATTTATGTGACCTT
CTTTGAAATCCTTGGTAAATGTTTAGAAGGAGATAAGATGGAAGACATga
ttggatttgtttattttgtgcTTGGTTTTGGTCTTTTTGCTGGCATTACT
GCAGTACCACAAATGCAAGTTTAATGTGAAGTTGATAAATTACTGCAGAA
AATATTTCCAAACGATTCTCTGTAgcttgggatgagctggagtttttata
agatacttcactaattggtcatggTCATTAGAAGTAAtggagatgacgcg
ttctttagaaaaacgACCAACCAAATTACATAAGAGCTTGTAGAAACTTT
AGCTTGTCCCTGTTACTTTAATTAATTCAAATGACTATGAACAATGAATC
TTATCActaaaaaattaacatttttcaatgaggcatatttttgaaagaat
aatAGCAAAAACATTCTTTACATACACTTTGTTGGGTAATTGAGTCTTCT
TTTCTAATCTGTCTTAACCAAAAACACGATAAAATCTGGTCAAAACTACC
AGAACACAGTTGAACAGTATTTACACCACTTCATCTAAGGCttgatatat
ttttattatgtcatgttattttctgatttttacgTATTAAGAATCATATT
GGTACACTGGACTTATTATTAATGCACA
Run BLAST on NCBI

transcript from alignment at sc0000097:397807..401872+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009584 ID=TCONS_00009584|Name=TCONS_00009584|organism=Clytia hemisphaerica|type=transcript|length=4066bp|location=Sequence derived from alignment at sc0000097:397807..401872+ (Clytia hemisphaerica)
ATTGTATTAAATAAGTCTTAATATTACCCAAAAAGGAGTAAAAAATTTTA
TAGTTATATTGATACTTTTTGTTCAGATTTAGACCAAGTAAGAAATTGAT
CAATAACTAAATGAGGTAGTTTGGACTTGTTTCAAAGAATTTGTCGAGGC
TGTGGATTTTTGGTTGGCAGCACAAGATGGAGACCAcacttgttttgaaa
atatttggagcaattattttgttttttgtcacttttctttttacattgCT
TCCATACAAATTAAAGCAGATGCGTGCAgacaaattgaaaattatttctt
gcttcTGCGGTGGTGTAAGTAGCTAAAAATTTAGAgtgattttattaaat
ttttttttatcagcAACTGTtatagaaaatttcttttttttgctttttat
ttcgTTTTATTAACAACAAAAGAATTCAGGAATATGTTCAATTGCTGAAA
ACTTGATAAAGATCTGTAAAGATAGAAATATtgttgtatttttatttttg
atttttttatccacACAATCTTTGGCTTTTTCTGTTTGATTTACAATGTT
GGTAAATGTCTGGGAAAATATAGATCAGGCTTTCctgttttctttttcga
atttaaaaatcttttttttacactATTCACTTAATTCAATTTTCAGCTCT
TTCTTGGGTTAAGTTTCCTTCACTTGATACCAGATACTTTGCGAGGATTT
TTTGGTAGTGAAATTTTACTCAAACTCCAAAGTAAATATCCTTTTGGAGA
GTTGGTAATCATATTGGGAATGATCTTGGTTCTGTCTGCAGAAAAGTTTG
CTAGCCTCATCCAAATCAACCAccaggaaaaaaaaacaaaatgtgatGGC
AGTGAAAGTTGTTGCCAAGAAGAATGTGCCGTACAAGGAGTTCGTAagtt
tatataagaacaaaatttaTGGACTTTAAGTTACTCGTTATGAATAGCAT
TATTATCAAATACCTTATGTgcttgatgtttttttaatcatCAAATGCAA
GCTCTCCTGCATCTAAAtattcagtatatagaatatCATACTTCTGTTAT
TActgtatttcaaaaaatctgtacTTGTTACTATTAGCAAATGAGAAAAC
ACCACTTTTCAAGCAACTGAGAAAACCATATGTGGAAGATCAGACAGTAG
AAGCAGTCCCATCAAACGAGAAAGCTCAGGAAGCTGGGACTACTGGAGAG
GCTGATAAAATGGATTCTGATGATGATTCTTCAATATCAATTGAGGATAA
GAAAACTGTTTTATTTACACAAAGTAACCAGTATAGAAAACTATCAACTA
CATCAAACACTTCAATGGGAAacaaaattcaacttttaaaaatcagaaCC
ATCTGTTTGGTTATCGCACTCATGATTCATTCCTTGTTCGAAGGTTTGAC
AGTTGGTTTGCAGCCTAATGCAACAGGTGTCTGTGTGCTGGTTGCTCTTT
TGTTGTTCCATAAATCGTTAGTTGGATTCTCATTGGGTATTGCTTTGGTC
AATGATAAAAGTGATCTGAGATCCTTCCAAAAGAAAGCTGTAAGTAACAT
TGAAATTCACTTCAGTTGAACCTATTTTGCGATGCCTGCATGTTTAATTT
ATAATCAAAATATAGCAACTAAAACCTGGTGAACAACTATCATTTTTATG
ATGTTTTTTTGTGGAACGTGCTTTAAATGTGAGATGCTTGACCACCATGT
ACTTTATTTCCTCAAATAAGTAACAAcataattattttgaagaatatgaA
AGTTTGGTTggttctcttttcaaaaaacgtTATGTACCCAccttaggggc
cgtccacatagtatgtacgcactaaaatgtcaaaaatcgaaaaagccCTG
CTCCCCCACCCCCTGGACaaaagcgtacgcaaatggctatatacccctgg
taagtacgtactttttaaattcaaacccccttccctcggttgaagaaaat
ttcgaatataAATCGTTTGGTttggacctttatttcatacatgaaagtca
atgtttattaagaaactttttcttttccttttccttgAGGCGTATAAGAA
GCGTAAGAAAACACAAGAAAACACAATAGCATGAAATATGAGAATAAATA
ATGCAGCAAAAACtatggaaaaactttttctgcgtacgtacattttcctt
tgacccctcccctcgccctgtacgcaagcattaGTGCGTacatactatgt
ggacggccccttaggtGTTTTTAGAGGGCCATGCTCATTGACTGAGGGTG
TTGCTATAAAGAGGAGATACAATAATTGCTACAGTGTTTCAGAGTTAGct
gtttaaaataatttttggactTACCCCGGGTGTAGGTACTATAAATTAAT
cgttgtccgtccgtccgttcgttcattcgttcgtAAATTTCtgccaaaaa
cggctaaaaagagGGTTGACTGTCAGACAtgtttttcatagaaaaattgg
ccaaattcaATATGTTTTTAAGCACATTTACCAATTCCCCTAGTAACGGC
GAGTGAAGCGGGAAAAGCTCAAGCTTGAAATCCctgatctttgtggtcag
cgaattgtagtctcttagttattagcttttctcaagattggctcattcat
tctttatgattttttgcacaaaggtgcctaactataaaccctcgaatgtg
acggagcccaattttggaataaaaaatttggggcaaattccagccaaaaa
acggctaaaaaaagggttttttggataTTGCTGAAAACTGGATGATTgat
ttttcctgattttctgcatgaaagtagggtaccatcatcggtaaaagatg
gttgaagcagattttcacgaaaaaaaattttcacctcaaaaattgaatgt
ttaTCCAAGAATCAgtatttataagcatacattaatgtttttagccaaat
tactcaatttgtTAGATGCGATGGACATTCTTTTCCTTCCAATCTCATCT
ATCCTTCCTTGGGATGGGCACGGGGACAATCAATGAGGAAAACGAACGac
caattttaataaatcgtcccTATTTGTGTTCCGAATGATTGTTTTAACGG
TCACGCTCACATAGATATCAATTAtcagtgttgcaacttttccgtctgta
gacggatatccgtccagttgagatacaaatatatcatttccgtcttgcca
gtaagagggtttttggttcaaatgacCATCTAATCCTAAGGTTTCCGTCC
ATATTCATAAAACCTAGTTGCAACACTGaattatgtgttaaatgcataac
caggtagttccataaaagtatcacttttgAAGTTCTTTCTTGATGTTTTA
GGCACTCTTCTCTATTGCATCCCCGATTGGAGCTATCATTGGCATTATCA
TTTTCAGCGTTAAATCAAGCTTTGTAAGTGACGAAGTGGTTGTTGTGCTC
ACAGGGCTCTCCACTGGAACTTTCATTTATGTGACCTTCTTTGAAATCCT
TGGTAAATGTTTAGAAGGAGATAAGATGGAAGACATgattggatttgttt
attttgtgcTTGGTTTTGGTCTTTTTGCTGGCATTACTGCAGTACCACAA
ATGCAAGTTTAATGTGAAGTTGATAAATTACTGCAGAAAATATTTCCAAA
CGATTCTCTGTAgcttgggatgagctggagtttttataagatacttcact
aattggtcatggTCATTAGAAGTAAtggagatgacgcgttctttagaaaa
acgACCAACCAAATTACATAAGAGCTTGTAGAAACTTTAGCTTGTCCCTG
TTACTTTAATTAATTCAAATGACTATGAACAATGAATCTTATCActaaaa
aattaacatttttcaatgaggcatatttttgaaagaataatAGCAAAAAC
ATTCTTTACATACACTTTGTTGGGTAATTGAGTCTTCTTTTCTAATCTGT
CTTAACCAAAAACACGATAAAATCTGGTCAAAACTACCAGAACACAGTTG
AACAGTATTTACACCACTTCATCTAAGGCttgatatatttttattatgtc
atgttattttctgatttttacgTATTAAGAATCATATTGGTACACTGGAC
TTATTATTAATGCACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005355XLOC_005355Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009584-exon-sc0000097-1491911889:397807..398120TCONS_00009584-exon-sc0000097-1491911889:397807..398120Clytia hemisphaericaexon
TCONS_00009584-exon-sc0000097-1510915933:397807..398120TCONS_00009584-exon-sc0000097-1510915933:397807..398120Clytia hemisphaericaexon
TCONS_00009584-exon-sc0000097-1575043694:397807..398120TCONS_00009584-exon-sc0000097-1575043694:397807..398120Clytia hemisphaericaexon
TCONS_00009584-exon-sc0000097-1491911889:398453..398699TCONS_00009584-exon-sc0000097-1491911889:398453..398699Clytia hemisphaericaexon
TCONS_00009584-exon-sc0000097-1510915933:398453..398699TCONS_00009584-exon-sc0000097-1510915933:398453..398699Clytia hemisphaericaexon
TCONS_00009584-exon-sc0000097-1575043694:398453..398699TCONS_00009584-exon-sc0000097-1575043694:398453..398699Clytia hemisphaericaexon
TCONS_00009584-exon-sc0000097-1491911889:398894..399345TCONS_00009584-exon-sc0000097-1491911889:398894..399345Clytia hemisphaericaexon
TCONS_00009584-exon-sc0000097-1510915933:398894..399345TCONS_00009584-exon-sc0000097-1510915933:398894..399345Clytia hemisphaericaexon
TCONS_00009584-exon-sc0000097-1575043694:398894..399345TCONS_00009584-exon-sc0000097-1575043694:398894..399345Clytia hemisphaericaexon
TCONS_00009584-exon-sc0000097-1491911889:401108..401872TCONS_00009584-exon-sc0000097-1491911889:401108..401872Clytia hemisphaericaexon
TCONS_00009584-exon-sc0000097-1510915933:401108..401872TCONS_00009584-exon-sc0000097-1510915933:401108..401872Clytia hemisphaericaexon
TCONS_00009584-exon-sc0000097-1575043694:401108..401872TCONS_00009584-exon-sc0000097-1575043694:401108..401872Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000097supercontigsc0000097:397807..401872 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.86172	2.47666	0	0	24.3755	18.0174	17.9517	17.1278	15.0548	13.7685	12.6288	11.2915	7.78876	9.05158	5.44256	6.72974	5.54008	5.09645	2.17548	2.32656	6.47426	6.46142	11.4868	10.89	8.78229	8.17261	12.0828	5.71324	16.4107	14.4838
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009584 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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