TCONS_00009561 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009561
Unique NameTCONS_00009561
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length373

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009561 ID=TCONS_00009561|Name=TCONS_00009561|organism=Clytia hemisphaerica|type=transcript|length=373bp
agcatttttcgaatttaagaaataagatTTAGGTTACGGTTCAAGAAATT
gtattggtataaaaaatgatgaactaatTAATAAAAGAAGTACAACAATT
TCTCCTTCAGTTGTATATCGTGCCTCTTTTCCCGAGGGTTCTCCGATTCT
TCGTCCATTGAAGCATTGAAGATGTTTCTTTGGTTGTGTTGTCGAACAAT
CACCTTTACTTCTTTTTCTTAATACCATTTATTTCTTGGTCTTCTGATGA
GACGATGTTCATTTTGTGATAAGTTTTCTCCACACGTCTTTGACATTGCA
CAGAATTGATGTTTCGGCTCCCACCGCCAAGCTCGCGATACGTTTTTCGA
CTTTCTGTAGAgagaaaatgata
Run BLAST on NCBI

transcript from alignment at sc0000095:560210..560582

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009561 ID=TCONS_00009561|Name=TCONS_00009561|organism=Clytia hemisphaerica|type=transcript|length=373bp|location=Sequence derived from alignment at sc0000095:560210..560582 (Clytia hemisphaerica)
tatcattttctcTCTACAGAAAGTCGAAAAACGTATCGCGAGCTTGGCGG
TGGGAGCCGAAACATCAATTCTGTGCAATGTCAAAGACGTGTGGAGAAAA
CTTATCACAAAATGAACATCGTCTCATCAGAAGACCAAGAAATAAATGGT
ATTAAGAAAAAGAAGTAAAGGTGATTGTTCGACAACACAACCAAAGAAAC
ATCTTCAATGCTTCAATGGACGAAGAATCGGAGAACCCTCGGGAAAAGAG
GCACGATATACAACTGAAGGAGAAATTGTTGTACTTCTTTTATTAattag
ttcatcattttttataccaatacAATTTCTTGAACCGTAACCTAAatctt
atttcttaaattcgaaaaatgct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005343XLOC_005343Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009561-exon-sc0000095-1491911889:560210..560582TCONS_00009561-exon-sc0000095-1491911889:560210..560582Clytia hemisphaericaexon
TCONS_00009561-exon-sc0000095-1510915933:560210..560582TCONS_00009561-exon-sc0000095-1510915933:560210..560582Clytia hemisphaericaexon
TCONS_00009561-exon-sc0000095-1575043694:560210..560582TCONS_00009561-exon-sc0000095-1575043694:560210..560582Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000095supercontigsc0000095:560210..560582 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.08797	0	0.324576	58.2184	37.351	10.0291	10.2912	7.88739	12.5204	4.93878	5.13941	1.4675	2.50829	0	0	0	0.522298	0.450185	0.35821	0	0	1.59553	0	0	0.343495	2.3407	0	1.65756	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009561 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top