TCONS_00009559 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009559
Unique NameTCONS_00009559
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length567

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009559 ID=TCONS_00009559|Name=TCONS_00009559|organism=Clytia hemisphaerica|type=transcript|length=567bp
ttctcaaattgatTTTGCCTCATTTTCTGGCTAAATAAACATAAGATAAG
ATACAAATTAAATGGAAAGATCTTTGTCAAAAAATACTGTAAATGGTAAT
CAAATCGTACAAACATATAAATTTCTAGATTATTAAATCCTAACATTGAA
TTTTAATTTCGCTGGACAAAAGAAGAGACCAATTCCATAATTTTGTTATT
GAAAATCAAAAGTTAGCGACCGGAATCTTCAGTATTTCCTTGGTACTTGT
AGTAACAAGTCGCTTTACCACCGTTGCATTCAATGTAATATTGCCGGTTG
GAAGGATAATCGTACTTCCCGTTGCCTTTATCTTGACATAAAGTATTTGG
ACAGCTAACAGCTTGTGGAGAATTTCTAGTGTCATCTTCATCATCGATGA
CTAATGCGGTGATTGAAGCTATGGTAGCCAAACATATCAATAAAGTGAAG
AGATTCTTCATTTTCAAGCGCCCaaaggttttgaattttgaattaatttc
aaTGATTTGGAGATTGTTTTGATTGAAGATGCTTCTTTGATGGATTGCTG
TATGCGTCTGATGTTTT
Run BLAST on NCBI

protein sequence of TCONS_00009559-protein

>TCONS_00009559-protein ID=TCONS_00009559-protein|Name=TCONS_00009559-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
KHQTHTAIHQRSIFNQNNLQIIEINSKFKTFGRLKMKNLFTLLICLATIA
SITALVIDDEDDTRNSPQAVSCPNTLCQDKGNGKYDYPSNRQYYIECNGG
KATCYYKYQGNTEDSGR
Run BLAST on NCBI

transcript from alignment at sc0000095:506721..507287

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009559 ID=TCONS_00009559|Name=TCONS_00009559|organism=Clytia hemisphaerica|type=transcript|length=567bp|location=Sequence derived from alignment at sc0000095:506721..507287 (Clytia hemisphaerica)
AAAACATCAGACGCATACAGCAATCCATCAAAGAAGCATCTTCAATCAAA
ACAATCTCCAAATCAttgaaattaattcaaaattcaaaacctttGGGCGC
TTGAAAATGAAGAATCTCTTCACTTTATTGATATGTTTGGCTACCATAGC
TTCAATCACCGCATTAGTCATCGATGATGAAGATGACACTAGAAATTCTC
CACAAGCTGTTAGCTGTCCAAATACTTTATGTCAAGATAAAGGCAACGGG
AAGTACGATTATCCTTCCAACCGGCAATATTACATTGAATGCAACGGTGG
TAAAGCGACTTGTTACTACAAGTACCAAGGAAATACTGAAGATTCCGGTC
GCTAACTTTTGATTTTCAATAACAAAATTATGGAATTGGTCTCTTCTTTT
GTCCAGCGAAATTAAAATTCAATGTTAGGATTTAATAATCTAGAAATTTA
TATGTTTGTACGATTTGATTACCATTTACAGTATTTTTTGACAAAGATCT
TTCCATTTAATTTGTATCTTATCTTATGTTTATTTAGCCAGAAAATGAGG
CAAAatcaatttgagaa

Coding sequence (CDS) from alignment at sc0000095:506721..507287

>TCONS_00009559 ID=TCONS_00009559|Name=TCONS_00009559|organism=Clytia hemisphaerica|type=CDS|length=354bp|location=Sequence derived from alignment at sc0000095:506721..507287 (Clytia hemisphaerica)
AAACATCAGACGCATACAGCAATCCATCAAAGAAGCATCTTCAATCAAAA
CAATCTCCAAATCAttgaaattaattcaaaattcaaaacctttGGGCGCT
TGAAAATGAAGAATCTCTTCACTTTATTGATATGTTTGGCTACCATAGCT
TCAATCACCGCATTAGTCATCGATGATGAAGATGACACTAGAAATTCTCC
ACAAGCTGTTAGCTGTCCAAATACTTTATGTCAAGATAAAGGCAACGGGA
AGTACGATTATCCTTCCAACCGGCAATATTACATTGAATGCAACGGTGGT
AAAGCGACTTGTTACTACAAGTACCAAGGAAATACTGAAGATTCCGGTCG
CTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005341XLOC_005341Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009559-proteinTCONS_00009559-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009559-exon-sc0000095-1491911889:506721..507287TCONS_00009559-exon-sc0000095-1491911889:506721..507287Clytia hemisphaericaexon
TCONS_00009559-exon-sc0000095-1510915933:506721..507287TCONS_00009559-exon-sc0000095-1510915933:506721..507287Clytia hemisphaericaexon
TCONS_00009559-exon-sc0000095-1575043694:506721..507287TCONS_00009559-exon-sc0000095-1575043694:506721..507287Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000095supercontigsc0000095:506721..507287 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.267283	0.105605	1.5289	1.43134	13.111	6.41328	8.03211	11.88	4.74539	3.49076	21.2146	18.962	2.455	3.88882	3.4764	2.20473	0.574892	1.26185	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009559 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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