TCONS_00009558 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009558
Unique NameTCONS_00009558
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length679

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009558 ID=TCONS_00009558|Name=TCONS_00009558|organism=Clytia hemisphaerica|type=transcript|length=679bp
ATTTTCATTGGATATCCGTGATGAAATAATAAATAAGATACATATTTTAA
AAGAGAAATACCCTATAAATTCACTGGTTCCTGTTCATAAAATCCACCAT
GTAGACATCGATTTTTACgttcattaaattctaatttccCTGGACAAGGT
AGACATGCAACAGTGACACCTAACCAACAACTGATATATCCTCGAGGATT
GAAAGGATTGGCAAGGTTGCCACTGAATTCAGGTCCTCTCATGTTGCACT
GATCAGGGCAGTCAGATGAGGTTTTCGTTGATATTGGTGAATCTGCAAAT
GGGAGAGTCTTAGCACATTCATCATTGGCAGAATAAAGACATTGGTtaca
tttttcactgaattctAAAGTCAATGGCCAGCAAACTTGACAATAAGGTT
CACCATTACTGCATTGGATGAAATAGTTTTTGTTGGAAGGATGCTGGTAG
TTTCCGTTTGGTTTGTTTTGACATAATGTGTTTGGACATGCCACTGTTGG
GGGTGGAGAATTTCTGGTGGCATCTTCATGGATAGCCAATGCGGTGATTG
TAGTCATAGTAACCAAGCATACAAACAATTTGGTGAGATGCTGAAGATTC
TCCATTTTCTTTTACTTCAAGGTTTTCAAATTAATCAATGGTTTGATAAT
ATTCTTCGTGTCtaattttcttctccttc
Run BLAST on NCBI

protein sequence of TCONS_00009558-protein

>TCONS_00009558-protein ID=TCONS_00009558-protein|Name=TCONS_00009558-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
MENLQHLTKLFVCLVTMTTITALAIHEDATRNSPPPTVACPNTLCQNKPN
GNYQHPSNKNYFIQCSNGEPYCQVCWPLTLEFSEKCNQCLYSANDECAKT
LPFADSPISTKTSSDCPDQCNMRGPEFSGNLANPFNPRGYISCWLGVTVA
CLPCPGKLEFNERKNRCLHGGFYEQEPVNL
Run BLAST on NCBI

transcript from alignment at sc0000095:504569..505247

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009558 ID=TCONS_00009558|Name=TCONS_00009558|organism=Clytia hemisphaerica|type=transcript|length=679bp|location=Sequence derived from alignment at sc0000095:504569..505247 (Clytia hemisphaerica)
gaaggagaagaaaattaGACACGAAGAATATTATCAAACCATTGATTAAT
TTGAAAACCTTGAAGTAAAAGAAAATGGAGAATCTTCAGCATCTCACCAA
ATTGTTTGTATGCTTGGTTACTATGACTACAATCACCGCATTGGCTATCC
ATGAAGATGCCACCAGAAATTCTCCACCCCCAACAGTGGCATGTCCAAAC
ACATTATGTCAAAACAAACCAAACGGAAACTACCAGCATCCTTCCAACAA
AAACTATTTCATCCAATGCAGTAATGGTGAACCTTATTGTCAAGTTTGCT
GGCCATTGACTTTagaattcagtgaaaaatgtaACCAATGTCTTTATTCT
GCCAATGATGAATGTGCTAAGACTCTCCCATTTGCAGATTCACCAATATC
AACGAAAACCTCATCTGACTGCCCTGATCAGTGCAACATGAGAGGACCTG
AATTCAGTGGCAACCTTGCCAATCCTTTCAATCCTCGAGGATATATCAGT
TGTTGGTTAGGTGTCACTGTTGCATGTCTACCTTGTCCAGggaaattaga
atttaatgaacGTAAAAATCGATGTCTACATGGTGGATTTTATGAACAGG
AACCAGTGAATTTATAGGGTATTTCTCTTTTAAAATATGTATCTTATTTA
TTATTTCATCACGGATATCCAATGAAAAT

Coding sequence (CDS) from alignment at sc0000095:504569..505247

>TCONS_00009558 ID=TCONS_00009558|Name=TCONS_00009558|organism=Clytia hemisphaerica|type=CDS|length=543bp|location=Sequence derived from alignment at sc0000095:504569..505247 (Clytia hemisphaerica)
ATGGAGAATCTTCAGCATCTCACCAAATTGTTTGTATGCTTGGTTACTAT
GACTACAATCACCGCATTGGCTATCCATGAAGATGCCACCAGAAATTCTC
CACCCCCAACAGTGGCATGTCCAAACACATTATGTCAAAACAAACCAAAC
GGAAACTACCAGCATCCTTCCAACAAAAACTATTTCATCCAATGCAGTAA
TGGTGAACCTTATTGTCAAGTTTGCTGGCCATTGACTTTagaattcagtg
aaaaatgtaACCAATGTCTTTATTCTGCCAATGATGAATGTGCTAAGACT
CTCCCATTTGCAGATTCACCAATATCAACGAAAACCTCATCTGACTGCCC
TGATCAGTGCAACATGAGAGGACCTGAATTCAGTGGCAACCTTGCCAATC
CTTTCAATCCTCGAGGATATATCAGTTGTTGGTTAGGTGTCACTGTTGCA
TGTCTACCTTGTCCAGggaaattagaatttaatgaacGTAAAAATCGATG
TCTACATGGTGGATTTTATGAACAGGAACCAGTGAATTTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005340XLOC_005340Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009558-proteinTCONS_00009558-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009558-exon-sc0000095-1491911889:504569..505247TCONS_00009558-exon-sc0000095-1491911889:504569..505247Clytia hemisphaericaexon
TCONS_00009558-exon-sc0000095-1510915933:504569..505247TCONS_00009558-exon-sc0000095-1510915933:504569..505247Clytia hemisphaericaexon
TCONS_00009558-exon-sc0000095-1575043694:504569..505247TCONS_00009558-exon-sc0000095-1575043694:504569..505247Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000095supercontigsc0000095:504569..505247 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.150969	0.441656	0	0.0836166	0	0	0.0970473	0.272564	2.60798	1.26065	3.21199	2.91579	3.86559	3.85804	2.35744	1.65593	0.679992	1.39394	2.08629	2.60298	0.218948	0.106795	0.0865491	0.236057	0.162089	0.14466	0	0.331388	0	0.0853606
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002557Chitin-bd_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
Vocabulary: Biological Process
TermDefinition
GO:0006030chitin metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0008061chitin binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006030 chitin metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0008061 chitin binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009558 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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