TCONS_00009432 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009432
Unique NameTCONS_00009432
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length648

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009432 ID=TCONS_00009432|Name=TCONS_00009432|organism=Clytia hemisphaerica|type=transcript|length=648bp
ccattttagaaaatttttgtctacgggttaaaattttgatctgtgcaTTT
CTTTATAATCAAGTGTAACATGTTCCACTCTGTGTAAATACAATGGGTCG
CAGTGATCGAGCGTATTTGCACGGGTGTTtccgtcactttcgtttttgac
cCGTTGCATTTGCCGCATGTCGAACCCTGTGCCGCATGTCGAACcctgtg
caaatgcaaggatttctgTGGCTGCCTGGCGCTAGATTTTTTAATACACT
TCTCTCAGAGATGACTCGGGAAATGCTGTTTCAGAGGTGTAAACAAACGT
GTTTTTGCCTGCAAGTGGGTTTTCAGTTTCTAACTCTCAATTACCAAtat
ctttttgggaaaaaattttcaagtgtCAGGGTGGTTTAATATTTATCATA
AATAGATAGAAAgaacatatttcaaaatttgagaggattCAGtttgacag
aacttaagaaaagctcaaaaaaactATAACTTGGTGGTCACTATAACTGG
TGGTAAAAACTGTTCTTTTTcgccactacagattttttgtCTGGTGCTTC
TGATGTCTGGTGTGTCACCAggatcaaaatttttcaagtcataTGCTTTT
AAAAATCAACCTATTGCCTATGCTTCCTTTCTTTTTTGTGATATTAAG
Run BLAST on NCBI

transcript from alignment at sc0000093:539950..540597

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009432 ID=TCONS_00009432|Name=TCONS_00009432|organism=Clytia hemisphaerica|type=transcript|length=648bp|location=Sequence derived from alignment at sc0000093:539950..540597 (Clytia hemisphaerica)
CTTAATATCACAAAAAAGAAAGGAAGCATAGGCAATAGGTTGATTTTTAA
AAGCAtatgacttgaaaaattttgatccTGGTGACACACCAGACATCAGA
AGCACCAGacaaaaaatctgtagtggcgAAAAAGAACAGTTTTTACCACC
AGTTATAGTGACCACCAAGTTATagtttttttgagcttttcttaagttct
gtcaaaCTGaatcctctcaaattttgaaatatgttcTTTCTATCTATTTA
TGATAAATATTAAACCACCCTGacacttgaaaattttttcccaaaaagat
aTTGGTAATTGAGAGTTAGAAACTGAAAACCCACTTGCAGGCAAAAACAC
GTTTGTTTACACCTCTGAAACAGCATTTCCCGAGTCATCTCTGAGAGAAG
TGTATTAAAAAATCTAGCGCCAGGCAGCCAcagaaatccttgcatttgca
caggGTTCGACATGCGGCACAGGGTTCGACATGCGGCAAATGCAACGggt
caaaaacgaaagtgacggaAACACCCGTGCAAATACGCTCGATCACTGCG
ACCCATTGTATTTACACAGAGTGGAACATGTTACACTTGATTATAAAGAA
Atgcacagatcaaaattttaacccgtagacaaaaattttctaaaatgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005288XLOC_005288Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009432-exon-sc0000093-1491911889:539950..540597TCONS_00009432-exon-sc0000093-1491911889:539950..540597Clytia hemisphaericaexon
TCONS_00009432-exon-sc0000093-1510915933:539950..540597TCONS_00009432-exon-sc0000093-1510915933:539950..540597Clytia hemisphaericaexon
TCONS_00009432-exon-sc0000093-1575043694:539950..540597TCONS_00009432-exon-sc0000093-1575043694:539950..540597Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000093supercontigsc0000093:539950..540597 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.32326	0.551651	1.18954	0.358085	1.52577	1.2918	0.311701	0.778162	0.204303	1.01225	0.982516	1.61467	0.537475	0.893076	0.229447	0.246232	0.182002	0.310911	0.601356	0.449483	0.625091	0.457347	0.185322	0.168484	0.520604	0.774378	0.443253	0.354789	0.358793	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009432 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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