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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009424 ID=TCONS_00009424|Name=TCONS_00009424|organism=Clytia hemisphaerica|type=transcript|length=1458bp
GGCTAAGACTAAGGCTATAGTACTTAATAAGAAAagtgatatgaaaaatg
aattaatgtgctaagtaaaattttttattgatatacaaaataaaataaaa
taaaactcctTCCTAGTATAAAGTAAACCTCAGAAATAATGCAAGAGATT
AGTAGATGCTAAGCAGGAATGAATGAATTAATGGCACAAAGATTGTTCTA
GAAGAAGGTGCTAAGACTTGGCACAAAGATTGTTCTAGGGTAAGGTGCTA
AGACTTGAAAGTGGAAGTAAAGATTCATTGTAAGGCTATAGCTGTAAAAA
TATATAGTTAGGATAAATGAGATTTAAATATGTTTTAGAAGTTCGTCAGA
AAATGTTGTTAAGTTATCATTCATGGTCACTTCATTTGGAAGTTCGTTCC
ACCAGTCAATGGTGGTAGGGATAAAAGAGTTGGAATACGCCACTACTCTA
CCACGCACTTGTTGGAACCTGTTGCTTATTCTTGCTCGTTTGGGCAAGAA
GTCTTTTGGTAGAGAAATCttttcattaacaattttgtgAAGCATGAGTA
AATTGTTTTTANTACTGATCCAATGTAATGCGATTTGACTGTCTGTAAAC
TTCTTGGATGATACAACAAGTCCTTTGAATGATCTTTTGACGATTTCACT
TGTGTATGCATTCAATAACGCAGCATACAACTAAGCTCTTGGTAATGATG
TCTTTTGAACAGTTCTTGTGCGTGAGAAGACAAGTTGACAGGAATGAGAG
CCATCTTTGAGACGAAATCGTGCATAGATACTAACACATACTNAGTTGTT
TAGTGAGGCTTTCGTTGTTGACTGGATTCCAGACGGAGGATGCATAATTA
AGAATGGGTTTCACGTAGATCTTGTATGCCTGGGATTTGATTGTTCTGTT
GCAGCCTCGGAGGTTTCTCTGTAGGGAGTTGATGATTTGGTTCGATTTTT
TACATATGTTAGCCACATTCATAccgtttcttcttttcattgagAATGCT
TTCGGATGTGAAGGAGACATGATGGAATGACTTCTCCTTTTGAACTTCTG
ATTGTTGCTGGGCTGTNTCATCCCATTGAAGTTGTCGTAGGTTTAGTTGT
TGGAGGTCTAACTTCATTGCAGCCACAAGAGGTGCAATCTTGCCAGTGAG
GTCGTAGATCTCTGCAACTTTTGAGATACATTGACGACGTGTGAGTTTTT
CAGGAATGATATTCAATCGATCTTGATTCTTCTTGCCTCTTGTCTTTTTG
GAAAAGTTGAGTTCAGAAATGTTAAGTGATACCTCATCTGTCTTTGGATA
CCATTTCAATCCTCCAACGATAATTGATTCACCATCATCAGTGAGGTCTG
GTAGCGGATCTTCGCCAGTGAAAGTGACTCCTTTGAGACGGAAGCCTCCA
TGACCGATGACATATTCAAATTCATCTGCACGCTGATGGGTGATCTTGAT
TGATTCTG Run BLAST on NCBI protein sequence of TCONS_00009424-protein >TCONS_00009424-protein ID=TCONS_00009424-protein|Name=TCONS_00009424-protein|organism=Clytia hemisphaerica|type=polypeptide|length=165bp
ESIKITHQRADEFEYVIGHGGFRLKGVTFTGEDPLPDLTDDGESIIVGGL
KWYPKTDEVSLNISELNFSKKTRGKKNQDRLNIIPEKLTRRQCISKVAEI
YDLTGKIAPLVAAMKLDLQQLNLRQLQWDXTAQQQSEVQKEKSFHHVSFT
SESILNEKKKRYECG Run BLAST on NCBI transcript from alignment at sc0000093:219897..221354 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009424 ID=TCONS_00009424|Name=TCONS_00009424|organism=Clytia hemisphaerica|type=transcript|length=1458bp|location=Sequence derived from alignment at sc0000093:219897..221354 (Clytia hemisphaerica)
CAGAATCAATCAAGATCACCCATCAGCGTGCAGATGAATTTGAATATGTC
ATCGGTCATGGAGGCTTCCGTCTCAAAGGAGTCACTTTCACTGGCGAAGA
TCCGCTACCAGACCTCACTGATGATGGTGAATCAATTATCGTTGGAGGAT
TGAAATGGTATCCAAAGACAGATGAGGTATCACTTAACATTTCTGAACTC
AACTTTTCCAAAAAGACAAGAGGCAAGAAGAATCAAGATCGATTGAATAT
CATTCCTGAAAAACTCACACGTCGTCAATGTATCTCAAAAGTTGCAGAGA
TCTACGACCTCACTGGCAAGATTGCACCTCTTGTGGCTGCAATGAAGTTA
GACCTCCAACAACTAAACCTACGACAACTTCAATGGGATGANACAGCCCA
GCAACAATCAGAAGTTCAAAAGGAGAAGTCATTCCATCATGTCTCCTTCA
CATCCGAAAGCATTctcaatgaaaagaagaaacggTATGAATGTGGCTAA
CATATGTAAAAAATCGAACCAAATCATCAACTCCCTACAGAGAAACCTCC
GAGGCTGCAACAGAACAATCAAATCCCAGGCATACAAGATCTACGTGAAA
CCCATTCTTAATTATGCATCCTCCGTCTGGAATCCAGTCAACAACGAAAG
CCTCACTAAACAACTNAGTATGTGTTAGTATCTATGCACGATTTCGTCTC
AAAGATGGCTCTCATTCCTGTCAACTTGTCTTCTCACGCACAAGAACTGT
TCAAAAGACATCATTACCAAGAGCTTAGTTGTATGCTGCGTTATTGAATG
CATACACAAGTGAAATCGTCAAAAGATCATTCAAAGGACTTGTTGTATCA
TCCAAGAAGTTTACAGACAGTCAAATCGCATTACATTGGATCAGTANTAA
AAACAATTTACTCATGCTTcacaaaattgttaatgaaaaGATTTCTCTAC
CAAAAGACTTCTTGCCCAAACGAGCAAGAATAAGCAACAGGTTCCAACAA
GTGCGTGGTAGAGTAGTGGCGTATTCCAACTCTTTTATCCCTACCACCAT
TGACTGGTGGAACGAACTTCCAAATGAAGTGACCATGAATGATAACTTAA
CAACATTTTCTGACGAACTTCTAAAACATATTTAAATCTCATTTATCCTA
ACTATATATTTTTACAGCTATAGCCTTACAATGAATCTTTACTTCCACTT
TCAAGTCTTAGCACCTTACCCTAGAACAATCTTTGTGCCAAGTCTTAGCA
CCTTCTTCTAGAACAATCTTTGTGCCATTAATTCATTCATTCCTGCTTAG
CATCTACTAATCTCTTGCATTATTTCTGAGGTTTACTTTATACTAGGAag
gagttttattttattttattttgtatatcaataaaaaattttacttagca
cattaattcatttttcatatcactTTTCTTATTAAGTACTATAGCCTTAG
TCTTAGCC Coding sequence (CDS) from alignment at sc0000093:219897..221354 >TCONS_00009424 ID=TCONS_00009424|Name=TCONS_00009424|organism=Clytia hemisphaerica|type=CDS|length=498bp|location=Sequence derived from alignment at sc0000093:219897..221354 (Clytia hemisphaerica)
GAATCAATCAAGATCACCCATCAGCGTGCAGATGAATTTGAATATGTCAT
CGGTCATGGAGGCTTCCGTCTCAAAGGAGTCACTTTCACTGGCGAAGATC
CGCTACCAGACCTCACTGATGATGGTGAATCAATTATCGTTGGAGGATTG
AAATGGTATCCAAAGACAGATGAGGTATCACTTAACATTTCTGAACTCAA
CTTTTCCAAAAAGACAAGAGGCAAGAAGAATCAAGATCGATTGAATATCA
TTCCTGAAAAACTCACACGTCGTCAATGTATCTCAAAAGTTGCAGAGATC
TACGACCTCACTGGCAAGATTGCACCTCTTGTGGCTGCAATGAAGTTAGA
CCTCCAACAACTAAACCTACGACAACTTCAATGGGATGANACAGCCCAGC
AACAATCAGAAGTTCAAAAGGAGAAGTCATTCCATCATGTCTCCTTCACA
TCCGAAAGCATTctcaatgaaaagaagaaacggTATGAATGTGGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009424-exon-sc0000093-1491911889:219897..221354 | TCONS_00009424-exon-sc0000093-1491911889:219897..221354 | Clytia hemisphaerica | exon |
| TCONS_00009424-exon-sc0000093-1510915933:219897..221354 | TCONS_00009424-exon-sc0000093-1510915933:219897..221354 | Clytia hemisphaerica | exon |
| TCONS_00009424-exon-sc0000093-1575043694:219897..221354 | TCONS_00009424-exon-sc0000093-1575043694:219897..221354 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000093 | supercontig | sc0000093:219897..221354 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008042 | Retrotrans_Pao |
Blast
The following BLAST results are available for this feature:
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