TCONS_00009325 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009325
Unique NameTCONS_00009325
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length691

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009325 ID=TCONS_00009325|Name=TCONS_00009325|organism=Clytia hemisphaerica|type=transcript|length=691bp
aaatgatgcTTTCAAGAGGATATCCAGATAAACTTTCCAAACTGCTTCCA
CTTGTTTCCGATCTTCAATTGTACTGCAATAGGATATTTCGATTGCCTTG
GATAGAGCTTCCAGTAAGGTACCCTTTGAAAGATTGCTCTGGCCAAGAGT
GATCATGCTCACAACAATCAAGTTACGAATGTTGAATTTGTAATTGTTGA
TTGCTGATATCTCTTTTCTTCTTTGCATTCCAACAACTGTCCTGtgaaac
ttcaaaatgattGATACAAAAGCTCTTCTGTTTTCTACATGTTTGAATTG
GTGACACAGAATATCGAATGCAGGGATTGTTTCAATTGAATCTGTAGAAG
ATACATCGAGTCTTTTGAGGTTTATAACCAAACATCGGTTTAGAACTGCC
GTGCTCAGTGCATGTCCTTTTCGCTCTGTGTTATTGGTTGCAATAAAGCG
AAATTCCGTGTGGATCTTTCGATTTCTTCTGTTAAAGGTTTCTATTTTTG
CTCCCGCGCAAACTACTAGCTCTGGGTCAACTTCAAGAAGAGAATTCAAT
CTTTCCAAAACATCACCCGGAACTTGACCAATGTTATCTAACAGAAACCA
AAAGCCTCTTTTGATAGCCTCCAAGAGTGGGCCTTCTgcaaaaacaaaat
gaacatcGCTGCGGTTGAAAGATTTGACATACCTACTTAGC
Run BLAST on NCBI

protein sequence of TCONS_00009325-protein

>TCONS_00009325-protein ID=TCONS_00009325-protein|Name=TCONS_00009325-protein|organism=Clytia hemisphaerica|type=polypeptide|length=230bp
LSRYVKSFNRSDVHFVFAEGPLLEAIKRGFWFLLDNIGQVPGDVLERLNS
LLEVDPELVVCAGAKIETFNRRNRKIHTEFRFIATNNTERKGHALSTAVL
NRCLVINLKRLDVSSTDSIETIPAFDILCHQFKHVENRRAFVSIILKFHR
TVVGMQRRKEISAINNYKFNIRNLIVVSMITLGQSNLSKGTLLEALSKAI
EISYCSTIEDRKQVEAVWKVYLDILLKASF
Run BLAST on NCBI

transcript from alignment at sc0000091:466649..467339

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009325 ID=TCONS_00009325|Name=TCONS_00009325|organism=Clytia hemisphaerica|type=transcript|length=691bp|location=Sequence derived from alignment at sc0000091:466649..467339 (Clytia hemisphaerica)
GCTAAGTAGGTATGTCAAATCTTTCAACCGCAGCgatgttcattttgttt
ttgcAGAAGGCCCACTCTTGGAGGCTATCAAAAGAGGCTTTTGGTTTCTG
TTAGATAACATTGGTCAAGTTCCGGGTGATGTTTTGGAAAGATTGAATTC
TCTTCTTGAAGTTGACCCAGAGCTAGTAGTTTGCGCGGGAGCAAAAATAG
AAACCTTTAACAGAAGAAATCGAAAGATCCACACGGAATTTCGCTTTATT
GCAACCAATAACACAGAGCGAAAAGGACATGCACTGAGCACGGCAGTTCT
AAACCGATGTTTGGTTATAAACCTCAAAAGACTCGATGTATCTTCTACAG
ATTCAATTGAAACAATCCCTGCATTCGATATTCTGTGTCACCAATTCAAA
CATGTAGAAAACAGAAGAGCTTTTGTATCaatcattttgaagtttcaCAG
GACAGTTGTTGGAATGCAAAGAAGAAAAGAGATATCAGCAATCAACAATT
ACAAATTCAACATTCGTAACTTGATTGTTGTGAGCATGATCACTCTTGGC
CAGAGCAATCTTTCAAAGGGTACCTTACTGGAAGCTCTATCCAAGGCAAT
CGAAATATCCTATTGCAGTACAATTGAAGATCGGAAACAAGTGGAAGCAG
TTTGGAAAGTTTATCTGGATATCCTCTTGAAAgcatcattt

Coding sequence (CDS) from alignment at sc0000091:466649..467339

>TCONS_00009325 ID=TCONS_00009325|Name=TCONS_00009325|organism=Clytia hemisphaerica|type=CDS|length=690bp|location=Sequence derived from alignment at sc0000091:466649..467339 (Clytia hemisphaerica)
CTAAGTAGGTATGTCAAATCTTTCAACCGCAGCgatgttcattttgtttt
tgcAGAAGGCCCACTCTTGGAGGCTATCAAAAGAGGCTTTTGGTTTCTGT
TAGATAACATTGGTCAAGTTCCGGGTGATGTTTTGGAAAGATTGAATTCT
CTTCTTGAAGTTGACCCAGAGCTAGTAGTTTGCGCGGGAGCAAAAATAGA
AACCTTTAACAGAAGAAATCGAAAGATCCACACGGAATTTCGCTTTATTG
CAACCAATAACACAGAGCGAAAAGGACATGCACTGAGCACGGCAGTTCTA
AACCGATGTTTGGTTATAAACCTCAAAAGACTCGATGTATCTTCTACAGA
TTCAATTGAAACAATCCCTGCATTCGATATTCTGTGTCACCAATTCAAAC
ATGTAGAAAACAGAAGAGCTTTTGTATCaatcattttgaagtttcaCAGG
ACAGTTGTTGGAATGCAAAGAAGAAAAGAGATATCAGCAATCAACAATTA
CAAATTCAACATTCGTAACTTGATTGTTGTGAGCATGATCACTCTTGGCC
AGAGCAATCTTTCAAAGGGTACCTTACTGGAAGCTCTATCCAAGGCAATC
GAAATATCCTATTGCAGTACAATTGAAGATCGGAAACAAGTGGAAGCAGT
TTGGAAAGTTTATCTGGATATCCTCTTGAAAgcatcattt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005217XLOC_005217Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009325-exon-sc0000091-1491911889:466649..467339TCONS_00009325-exon-sc0000091-1491911889:466649..467339Clytia hemisphaericaexon
TCONS_00009325-exon-sc0000091-1510915933:466649..467339TCONS_00009325-exon-sc0000091-1510915933:466649..467339Clytia hemisphaericaexon
TCONS_00009325-exon-sc0000091-1575043694:466649..467339TCONS_00009325-exon-sc0000091-1575043694:466649..467339Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009325-proteinTCONS_00009325-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000091supercontigsc0000091:466649..467339 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0736053	0.0717767	0.0833397	0	0.297782	0.156874	0	0.265778	0	0.307316	0.223716	0.0980414	0.146858	0	0	0.044853	0	0.0566348	0	0.0818767	0.142332	0	0	0	0.23708	0.141059	0.100927	0	0	0.166471
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011704ATPase_dyneun-rel_AAA
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0016887ATPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016887 ATPase activity
molecular_function GO:0005524 ATP binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009325 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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