TCONS_00009314 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009314
Unique NameTCONS_00009314
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1015

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009314 ID=TCONS_00009314|Name=TCONS_00009314|organism=Clytia hemisphaerica|type=transcript|length=1015bp
aatcattGAGAGGCGATTAAGCATTTATTAGCAAATTTCTTGCTGCAAAG
TAAATGCTGCAGATAGATAATTTGGAGAACTCGAGTTTATTATAGGGCTA
AGTCCAAATAAATATAAACAATAACAACAATACTTTCAGTACTTTGATAA
CATAGTGTTAATAAAACTTGattaaaaaatgtaaatgtTTACAATACATC
CACAATGaaaccataaaaaggttaattCCAAAGTTAACTTCAATTGATGG
TTGGCCAAATGTCTCTTTACTCTTTCCACAAAGTATTGAGTAGTTAAAGA
AGTCACATTATTTTTCAGATCAAATCAGATCCAACTTTTAATATGGGAAG
TATAAATCAAATAGCATTATCCTGAGCATCCTCTGCAACCACAATGAATA
CATTCAACAACTCTTCCTTCTTCCAATTTGGATTTAGGTACTCTGCAAAT
ACAATTTGTTCCAAAGTTTGTATCTCGTGGTTGTATACATCTTAAACAAC
ATAGATTTTCAAAACCTTGTTTTTTCCACTTTGCGATCAAGTTACCATCT
GCAATCTTCTCTTTTAAGCAATAATCATAAAGTTCCCTACTGATAGCTTT
TCTCTTATAAAATAGATCATAAATATATCTGGACTTTTGGTGATGGAGTC
GAAAAATAGGCCATAAGGCTTCAACCTTTCGTTTTCCTTCATGCGGGTCT
TGCTCAGCTTCCCTCATTTTTGCGTCCAACTCATCCAATGTTGGTTCAAT
GAGTTCCCATCCTTCTGGTGGAGGCTTTCTACTTCTTTTTACTTTCGGCA
TTTCACTGTTTCTTTAACAGATTGAATTTAattaaaattaagaatattat
TAAAACAGTCAAATGTGTACATCGTACTGGGTCTAAATTGTATTAATAGT
GAGGAACTCCTCcccaatcaaattttgtgaaATGAAAAACCAGAAATTTA
ACCAAAGAATAAGGTGTGCAAAGTTTTAGCCAAGTCAAATAACGATTTCT
GATCTTTAAAGGCAA
Run BLAST on NCBI

protein sequence of TCONS_00009314-protein

>TCONS_00009314-protein ID=TCONS_00009314-protein|Name=TCONS_00009314-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
MPKVKRSRKPPPEGWELIEPTLDELDAKMREAEQDPHEGKRKVEALWPIF
RLHHQKSRYIYDLFYKRKAISRELYDYCLKEKIADGNLIAKWKKQGFENL
CCLRCIQPRDTNFGTNCICRVPKSKLEEGRVVECIHCGCRGCSG
Run BLAST on NCBI

transcript from alignment at sc0000091:298139..299153

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009314 ID=TCONS_00009314|Name=TCONS_00009314|organism=Clytia hemisphaerica|type=transcript|length=1015bp|location=Sequence derived from alignment at sc0000091:298139..299153 (Clytia hemisphaerica)
TTGCCTTTAAAGATCAGAAATCGTTATTTGACTTGGCTAAAACTTTGCAC
ACCTTATTCTTTGGTTAAATTTCTGGTTTTTCATttcacaaaatttgatt
gggGAGGAGTTCCTCACTATTAATACAATTTAGACCCAGTACGATGTACA
CATTTGACTGTTTTAataatattcttaattttaatTAAATTCAATCTGTT
AAAGAAACAGTGAAATGCCGAAAGTAAAAAGAAGTAGAAAGCCTCCACCA
GAAGGATGGGAACTCATTGAACCAACATTGGATGAGTTGGACGCAAAAAT
GAGGGAAGCTGAGCAAGACCCGCATGAAGGAAAACGAAAGGTTGAAGCCT
TATGGCCTATTTTTCGACTCCATCACCAAAAGTCCAGATATATTTATGAT
CTATTTTATAAGAGAAAAGCTATCAGTAGGGAACTTTATGATTATTGCTT
AAAAGAGAAGATTGCAGATGGTAACTTGATCGCAAAGTGGAAAAAACAAG
GTTTTGAAAATCTATGTTGTTTAAGATGTATACAACCACGAGATACAAAC
TTTGGAACAAATTGTATTTGCAGAGTACCTAAATCCAAATTGGAAGAAGG
AAGAGTTGTTGAATGTATTCATTGTGGTTGCAGAGGATGCTCAGGATAAT
GCTATTTGATTTATACTTCCCATATTAAAAGTTGGATCTGATTTGATCTG
AAAAATAATGTGACTTCTTTAACTACTCAATACTTTGTGGAAAGAGTAAA
GAGACATTTGGCCAACCATCAATTGAAGTTAACTTTGGaattaacctttt
tatggtttCATTGTGGATGTATTGTAAacatttacattttttaatCAAGT
TTTATTAACACTATGTTATCAAAGTACTGAAAGTATTGTTGTTATTGTTT
ATATTTATTTGGACTTAGCCCTATAATAAACTCGAGTTCTCCAAATTATC
TATCTGCAGCATTTACTTTGCAGCAAGAAATTTGCTAATAAATGCTTAAT
CGCCTCTCaatgatt

Coding sequence (CDS) from alignment at sc0000091:298139..299153

>TCONS_00009314 ID=TCONS_00009314|Name=TCONS_00009314|organism=Clytia hemisphaerica|type=CDS|length=435bp|location=Sequence derived from alignment at sc0000091:298139..299153 (Clytia hemisphaerica)
ATGCCGAAAGTAAAAAGAAGTAGAAAGCCTCCACCAGAAGGATGGGAACT
CATTGAACCAACATTGGATGAGTTGGACGCAAAAATGAGGGAAGCTGAGC
AAGACCCGCATGAAGGAAAACGAAAGGTTGAAGCCTTATGGCCTATTTTT
CGACTCCATCACCAAAAGTCCAGATATATTTATGATCTATTTTATAAGAG
AAAAGCTATCAGTAGGGAACTTTATGATTATTGCTTAAAAGAGAAGATTG
CAGATGGTAACTTGATCGCAAAGTGGAAAAAACAAGGTTTTGAAAATCTA
TGTTGTTTAAGATGTATACAACCACGAGATACAAACTTTGGAACAAATTG
TATTTGCAGAGTACCTAAATCCAAATTGGAAGAAGGAAGAGTTGTTGAAT
GTATTCATTGTGGTTGCAGAGGATGCTCAGGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005206XLOC_005206Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009314-proteinTCONS_00009314-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009314-exon-sc0000091-1491911889:298139..299153TCONS_00009314-exon-sc0000091-1491911889:298139..299153Clytia hemisphaericaexon
TCONS_00009314-exon-sc0000091-1510915933:298139..299153TCONS_00009314-exon-sc0000091-1510915933:298139..299153Clytia hemisphaericaexon
TCONS_00009314-exon-sc0000091-1575043694:298139..299153TCONS_00009314-exon-sc0000091-1575043694:298139..299153Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000091supercontigsc0000091:298139..299153 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
79.8909	76.2322	99.7266	99.1272	80.7882	62.1982	53.1388	60.4498	46.3283	39.5585	36.8802	32.1294	19.4674	18.6666	20.4204	24.0332	43.353	36.2392	10.2473	14.3463	41.4517	38.8597	56.0712	50.9768	22.07	25.1379	37.6622	27.7623	33.6126	38.0289
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001748G10
IPR018230BUD31/G10-rel_CS
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus
Blast
[Close]
BLAST of TCONS_00009314 vs. Swiss-Prot (Human)
Match: BUD31 (Protein BUD31 homolog OS=Homo sapiens GN=BUD31 PE=1 SV=2)

HSP 1 Score: 266.544 bits (680), Expect = 9.758e-89
Identity = 124/144 (86.11%), Postives = 135/144 (93.75%), Query Frame = -2 
Query:  370 MPKVKRSRKPPPEGWELIEPTLDELDAKMREAEQDPHEGKRKVEALWPIFRLHHQKSRYIYDLFYKRKAISRELYDYCLKEKIADGNLIAKWKKQGFENLCCLRCIQPRDTNFGTNCICRVPKSKLEEGRVVECIHCGCRGCSG 801
            MPKVKRSRK PP+GWELIEPTLDELD KMREAE +PHEGKRKVE+LWPIFR+HHQK+RYI+DLFYKRKAISRELY+YC+KE  AD NLIAKWKKQG+ENLCCLRCIQ RDTNFGTNCICRVPKSKLE GR++EC HCGCRGCSG
Sbjct:    1 MPKVKRSRKAPPDGWELIEPTLDELDQKMREAETEPHEGKRKVESLWPIFRIHHQKTRYIFDLFYKRKAISRELYEYCIKEGYADKNLIAKWKKQGYENLCCLRCIQTRDTNFGTNCICRVPKSKLEVGRIIECTHCGCRGCSG 144
The following BLAST results are available for this feature:
BLAST of TCONS_00009314 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BUD319.758e-8986.11Protein BUD31 homolog OS=Homo sapiens GN=BUD31 PE=... [more]
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