TCONS_00009287 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00009287
Unique Name	TCONS_00009287
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1835

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000091:392767..402214-

transcript sequence

>TCONS_00009287 ID=TCONS_00009287|Name=TCONS_00009287|organism=Clytia hemisphaerica|type=transcript|length=1835bp
cttagtaGAAAATACTGAAATGAGTGCAGATCTGTAACAACATaatttaa
ttatttaaaaatgaaaaatatacgtATGAGAAAGATGAAATTTGGTTGTA
TGTTTGAAGAGTAAGGATTGAAATGGGAGCCAGAGACACTTCTGCACTGG
ATATGACACCAGTACGTGATGAAAAATATGATGGCATTACAATATCAGAG
GCCAAAGAGCGTCAAATGGTTGGCTCATTGTCAAGGAAGGAATTAGAGGA
CAGATATCTGAGGGTGCGAGAAGAAAATGTGCAACTGAAGAAGACATCGC
ACAAGCAAGAAGCCAAAATGAAACAGATGGCAACAAAGCTCTTGCGACTT
GTAAAGGATCGAAAACGCCTGGAAGAAGGAGGAGGTATTGGTTTTGTGGA
CCATGAGTCAAAAGATAAAATTGACGAGTTGAAGACGACTATCTCTTCAC
TACAGAAACAAAATGACCTCCTAAAAAGTCGGCTCACAGTGGCAAAACAG
CAGTTACAGACCCATGGAAAGAGACCTTCTGCTTATGATCATGTAAAGTC
AAGAGTTTTCACTAACCAATCTTCTCCAAAGAAAACAAATGCTAAGCAAC
AAAGAATCAGAGAACAAATTCGAGTTGTTGAGCCACCCCCACTACCCTCG
AAAGATCTTCACAAAACACCTCATCCGGTTTTACCACAACCAAGATACGG
ACATAGCTTGTTGGAAGAAACCAGACTCGAGAAGCGTGAATTGGAAGATG
TTGTTGATAGTTTGCGTCATCAGTTGGTTGATTATGAAGAGAAAGTACAG
TATTTGCAAGAACAGCTCACCAAAAAGGAAATTCATCATGAAGATAGCAT
ACAACAGCTACGTCAGAGAGTCTCTGGTACCCAAAGAACCACTATACAAG
AAAACGTCGAGTTGATAAAATTACAACGTGAAGTGCGAGATAAAGTCTCC
AAATTGCAAAACCTTCAAGGGAAATACCAAAACTTGGAGGACCTTCTGAA
GAAAGTGAAAACTAGCCACGAACAAGTTCTAGAAGAAATGGAGAAAATGA
CTTCAAAACTAAAAGAGGAACAATTAAAGAATTCTTCGTTATCAAATGAA
TTAAAACAAGGAAACATATCGCAACAGTCCTTAGCTATGAAAGAAGAACA
AATCCGTGACTTACGAGAAGAGGTCGAGATGTTGAAGGAGGCTCATGGGA
AATTGTTACATAGTACGTTTGACGCTGAAAGGGAGAGAGAATTCCGTACC
AAAGAAAAACAATACCAGTTACGCATCGCTCAACTTGAAGCTACTATCAA
AGCAGATGTCTCTGAGAAAAATGATGTTCTCGACAAACTCACTTTCGAAA
GAGATACGACGGACAGTTCTCAGAAACAATTGCGTGAATTACAAGTCAAA
TATTTCGCCTTGAAAGAAAAACACGATGATTTGCTGGAGAAATTGAAATT
CTTCACCGGTGAAAGTGCTGCTGATTTCGAAGAAATACAAGAAGCGTTGC
TGCTCATTAAGACTCGTAAAGAACGTGAAAGTCATGACTTGCACTTCCTG
GAGAAAGTTGACGACAACGTCAGTCGTGAGCTACAAAAAGAGAATCAACA
ATTGCAAGCAGCCCATGCAGACACCATCAACGAGTTGGAGAAAACGAGAA
GCATGCTGCTGATTCAGCATAATATCAACAAGGATTACCAAAGAGAgGTT
GAAGCGACGACGAAGAAAATGGAAGAACTGAAGAATGAGTGTGATACGAG
AATCGAAGAATATGCTCAACTTCTTGATATACGTGCTGAAAGGATCaagA
AATTGGAAGGTCAATTGAAAGATGTGGCTTATGGT

Run BLAST on NCBI

transcript from alignment at sc0000091:392767..402214-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00009287 ID=TCONS_00009287|Name=TCONS_00009287|organism=Clytia hemisphaerica|type=transcript|length=9448bp|location=Sequence derived from alignment at sc0000091:392767..402214- (Clytia hemisphaerica)
CTTAGTAGAAAATACTGAAATGAGTGCAGATCTGTAACAACATAATTTAA
TTATTTAAAAATGAAAAATATACGTATGAGAAAGATGAAATTTGGTTGTA
TGTTTGAAGAGTAAGGATTGAAATGGGAGCCAGAGACACTTCTGCACTGG
ATATGACACCAGTACGTGATGAAAAATATGGTTAGTATGAGTTACTGCGT
GTCAAGATTATTTTCATTGTAATTCCGAGCTGGGACGAGATGGAGTTTTT
ACAAGCTCTTATTTTATCTGATTGGTCGTTAACCAGTAATAAAACAATTT
TGTTACTTTTTCTAAAAAATACATCATTTTTATTAGTCCAAATGACCAAT
TGTTAAAGTATCTTATAAAAACTCCATCTATATCTTATGCCAGTAAATCG
AAAAAGTTCTTTACTTCATTGATTCTCAAATGAAATTTCAGGCAATGACT
ATTTTGTAACCATCATATAGTTATTATACAAAACCCCCGGTTTAGTTATG
TATTGTTTAGATTTATTGTCAACTTTTTTTGTTGGGAATGAAAACAAGCT
GTGATTTACATACTTTTTAATCACGCTACTTTTTTGAATTTTGGATTGGT
TTATTTTTTAGTCTCATGGCAAAGCTATGTAGATCTATGCAGAGCTATGC
AATTAAATCCATTTGTGTGCAAAAACTGCTAACAATGAAAAGAAACAAAA
TTCGAAACTGGGGTTTTTAATTCATGATATGCACCATTGCAATGTCTGCC
ATGGACCCAACAGCTGAATGGTTGATAGTGACGTATTGACTGATTTTACA
TCACCTACAACCAATCAGCTATTGAGTCTGTGATGCAATATCAGAAGACA
TTGCAGTGGTGCTATCATGAATAATGACTATTGTGTAACTCAAATCTCCA
TGCCCAGCTGCAAAATTTCGCCTTAAAATGTATCTATTTTTGACTTTATC
AGATGGCATTACAATATCAGAGGCCAAAGAGCGTCAAATGGTTGGCTCAT
TGTCAAGGAAGGAATTAGAGGACAGATATCTGAGGGTGCGAGAAGAAAAT
GTGGTATGTATGATTCTTCCTCTATCTACTGTACCCTTCATTCAGCTTCA
ATTATGTTTTATTTATTTTCAAATCTTTTTATTTTGAGTTTATTTTATTT
CTATAAGGACTTCTTTATTATTTTTTGCAGCAACTGAAGAAGACATCGCA
CAAGCAAGAAGCCAAAATGAAACAGTAAGATACAATTTTCAATTTGATGT
TTCACAAATTAATATAAAAGTTCAAATATATTATTATTTTATTGTTTTAT
CTCTATTTATAGGATGGCAACAAAGCTCTTGCGACTTGTAAAGGATCGAA
AACGCCTGGAAGAAGGAGGAGGTAAACTTTAAAGCTTAACAATTAGCATT
AACATGTTAGTATTTAAATTTGCACATGTTAACATGATGATGGCCTGCAC
ATAGTGTTATTTGGATGACGTTTTTGTTAATAAAAACAGTGGGTACGACC
CCCCTTTTTTAAATGATATTCCCTTCTTGGCATCCCTACAACCTTGAAAA
ATAATGGTTCCCCTTAAAAGGTTGTCATGCTTTACCATCCTTAAAAACGC
TGAGTCTTTTGATTGCCAACCACACAGAAACAGCACACTAAAATTGCCTT
AAAATGGAAAATACTCTATAACTGAAACGGTTTGATAAAGTACAACCCAA
AGGCATTACTGGTTTTCCAAATTAACTTTTGTAATAAATTTTCTAGGTAT
TGGTTTTGTGGACCATGAGTCAAAAGATAAAATTGACGAGTTGAAGACGA
CTATCTCTTCACTACAGAAACAAAATGACCTCCTAAAAAGTCGGGTATGT
TGACTTTCCATTGCAAAAACAAATATCCTGTTTTGTACTCGGTTACTCAC
ATTATAATTTAAACTTTATAATTTTTACTATAATGATTATAACACATTCT
AATTTCACTTACAAAAAAGTTTTTTTACTATACATTTACACATTTTAGCT
CACAGTGGCAAAACAGCAGTTACAGACCCATGGAAAGAGACCTTCTGCTT
ATGATCATGTAAAGTCAAGAGTTTTCACTGTAAGTTTTCATGAATGCTTG
TTTCAACTTTGGAATGAAAAATATTAAGAAGGGATTCCTAGAATTCAAAA
TGGTGATCAAGTCTTTCCTGGCCCAATTTATCCTTTCAATAAGATTTCTT
TCTTCTTTGTTTTAGAACCAATCTTCTCCAAAGAAAACAAATGCTAAGCA
ACAAAGAATCAGAGAACAAATTCGAGTTGTTGAGCCACCCCCACTACCCT
CGAAGTAGGTGAAACTTTATAACATATATAAATGTCATATGGAATGAAAA
AATGACTCATACAAATTCAATTTCTAATCTATATATTCATGCACAATGTG
TTAATATCTTATGTTGTTTGGATCATAGACTTTCTGTAATATGGGACATG
AAAATTTGAACTATCTGTATTTTTCACAGAGATCTTCACAAAACACCTCA
TCCGGTTTTACCACAACCAAGGTTCGTTGAGTTTCTCCTTCCCTTTAATT
TTATATTCTTGACTTGTTCTCAATTCGATTTGAACTAGAATTTGATACTG
TTTTTCATTTATGTGTCTATCATATGTACCGACGAAAACTTTAGGGCAGC
CTAGAGAGTTTTAAAATTGTCAGATATTTATGAGATTTTGTTTGCACTGG
CTTACATGGGCTGACTCGCTAATTCCTACAATGGGCCTTTTAATAGTTGG
AAAGATGAAGAAGTTGAGCTCAGTGCGTTGTGCAAATTTGACCAGGTTTG
ATTTTTGTCTAGAACCAAATACATTTTTGTGCTATTTTATTTGACTCAGT
GATCAACATTTTAATAACTTATTCATCATTTTAGATACGGACATAGCTTG
TTGGAAGAAACCAGACTCGAGAAGCGTGAATTGTAAGTCCTTCTTGCTAT
TGAAGAATTCCAATAATCTTGCTAAAAACAAAACAAAATTAGTAATAACC
TCTCAATGCTGGTAATTAGGTGGTTCCCTTCATATTTTTCGAAAGCATCC
AGCGAGGATCCTTTTTTAAACATCTGTTTCCCAGGCATAGCCTTCCTTGA
AAAGTTGATCTGTTGGCCAAAAGTTTCAAAAATCTTATTCCTAGAAATGA
AAATCTGTTTCTCCTCAAAACCTAAATTTTTAATCTCAAAGTATCTTCCC
TGGAAAATTTGGTCAAAGTTTTGATCTGTTCTCCCAACCTAAAAGGAATA
GGATATCTGTTTCCCCCTCCTGGAAATTTTCTCTGTTTCCCTTGCTTTTT
GTGATTGATATATGTTTTCCCCCAGAAAGCTCAATCTGTTTCCAATGCAT
CTCATAGAAATATTGATCTGTTTCTTTCTGATGACGTCATCAGCTGGAGC
GGGGAAACCGATAGTTTTAAGGAAAAGGTCTTTCCTAGAAAATCGGATCT
GTTTCCCCATTTTTCAAAAAAAGCTCTCTCCTAGAAAAGGGAAACAGATA
TTTCGGGGAAATGGGCCCGTTGGCTGCTTCTGATTTTTATCTTCAGTCTC
TACAAATTTAGCAAATTAGTCGAAAGAGTGCTTTTATTTTACACCCTTTC
TAAAACAGCTTTTGCTAACTTGCCGATGTCTTTTGTGTGTCTATTTTCTT
TTAATTTTATAATTGCTGATAAAGTTATTAAAATGATAAAATGGCCGGGT
GAATAAGCACCAATCGTTTCCAGCAAAATTTCCTGATCTAAACTCAGACT
GAATTTTATGTATTCAAACAAATTTAAATCGCTTTGAGATTCATACGTGT
TTGATTTCTCTTGGCAGTTAAAAATATACGGTTTTTTACAATTTTTTCTT
TGCAGGGAAGATGTTGTTGATAGTTTGCGTCATCAGTTGGTTGATTATGA
AGAGAAAGTACAGTATTTGCAAGAACAGGTATCGTTATTCGTGTTTATTC
ATTTTATTTTATCTACAAATTGGTTAAATGAACATATCAACACCCCTACG
CTACAAAGAGATTGGGTCCAGTTTATGAAAAATAAATTCTTTCAAAATTC
TGTGTAAATGAGAAGATTGATGCGATTAATTCAGACATTTGACGACAAAC
CTCTTTGGTAAACTCGAACCCAGTTTCCTTGTGCTGAAGACTGATTAAAT
GTGCTCTGCAGTGTTACGGTTTGCAACACTCAAAAGAAAACACCAAGCCT
ATAAATTCTTTACCATTACTTTTATAAGGTTTATAGGTTGGCTGATAAAA
TGTTTGAATCAAATTTATTTATTTATTTACCATCGCCCTTTTAGCTCACC
AAAAAGGAAATTCATCATGAAGATAGCATACAACAGCTACGTCAGAGAGT
CTCTGGTACCCAAAGGTAATCATTATAATCTTGATTGCAAATAAACCCTT
GCTACGTATTGGAAATTACATCCTTAAGAAGTCAAGAACGCTTTATTTTC
AAACAGAAATAGTTGCTCTTGCGTTTTAGCTTGCAGTCCTGGAAATTATA
AGTTATTTTTCTGTGGGCTTCTTAGGATTTTTTTGGCACATAGATATAAT
TCATGACTATGAATATCTAGGTCTCTTAATAACTTCTATATCAATACATG
TTTGGAAATACAATGTGTCATTCCATTCTCGTCATTTTTTAGAACCACTA
TACAAGAAAACGTCGAGTTGATAAAATTACAACGTGAAGTGCGAGATAAA
GTCTCCAAATTGCAAAACCTTCAAGGGAAATACCAAAACTTGGAGGACGT
AAGTCTGAGTAACTATTCTCAATAAACTTGAAAAGAGACTCGTAGAGGTA
TCGACGAAGCAAAATATGTGTTATACTTCATTTAGTTTTGGTTACACATG
TCGAGTTTGCTCCATTTTTAATTCGCTAATTTCAATGAATTGACCCCATC
GAACCTACATTTTTGCTCTAGATATTGGAAACTATATTATATTTAGATTA
AGAGCACCAGTTTGTTTTTCATCGATTCAAGAATAACTTTTTGGTATGGG
TCTCTCGCATTTTATTGAATCTGAATAATATACTATGAGTTCATTTTATA
TATGACAGCTTCTGAAGAAAGTGAAAACTAGCCACGAACAAGTTCTAGAA
GAAATGGAGAAAATGACTTCAAAACTAAAAGAGGTACAATATTTTGATTG
ATCTCGACAACGTTCTATAACTCTTAAACCGCTTGAGCTCTTGGGTTACA
AGTAAACAAACGCCTCTATTTTGGCGCTTTTGACTTGCCCTAACATTTTT
TAATACTTTAATGGTTGTTTTGCAGGAACAATTAAAGAATTCTTCGTTAT
CAAATGAATTAAAACAAGGAAACATATCGCAACAGTCCTTAGCTATGGTA
AGTATTTATTGGTATTTAAACTACAGTTGACGCTCTGTATTTCGATCTTC
AAGGGGAATTGGATTTTCATCGAAAAAGGGAGCGTCGTTTATGAGAGTTT
CTTGTTGACAGGGACTTTAAATTTTGTCGAATAGGGGAGCCTATCGAATA
GTAGAATGTCGAATAAGAGAGCATCAACTGTATATTTAAAAACAGAGAAT
TTGAATGTTTATATAGTAGTTTGTGTTTCATACCGAGCGTGTCGAATGTT
CCAGAAAAATTCTAACTTCCCTAATTGAAAGTATCAAGCGTTTTCACCGA
AACTAGCCTACAAGTATTTTTTTCCGTTTCTTTTTGGATTTAATACCCGA
GGGAAACCATGGTAACTTTTAAAAGTTCTTTCGTTAAGAATTATTTTGAC
TTCAATTCATAGAAAGAAGAACAAATCCGTGACTTACGAGAAGAGGTCGA
GATGTTGAAGGAGGCTCATGGGAAATTGTTACATAGGTATTGGATCCATG
ATTACCTTTTAAAAAAACTGTGCAAGAATTCTGAGATTTCGGCATCTGTG
GGTTCAACACCCTTTCAACATCTTTTGCTTACTTCTTTCTTTTTTCTTAA
CAATGGAATGACTTCTTTCAAATAATTGAACGTAACAAAGCGTAAAAACA
AAACCATCCATCTAGACAAATAAAAATAAGAATTGCTGGACACACTAGGC
CTAAGAAGGGAAGAACAGGCTCAGATTAGACACAAACGGATAAAATTTGT
GCTTTGCTGCTCATGTATTAACGTCAGTTTTTCCCAGCTGCTTTCTTGGA
CATGATTGAGTATATAGAGCCTTGAAGTTAGCTTTGTTGTTATTATCTCT
TAGTACGTTTGACGCTGAAAGGGAGAGAGAATTCCGTACCAAAGAAAAAC
AATACCAGGTATTATATACTGAAATCGTCCATAACTACTAGTTGTCTCCA
TCATTTGGAACGAAATACCATACAGTCGTCTTTTTACTTCTTTTCAAGAT
TCGAAACGATTTTACAGGCAATTTCGTGGAATCCTTTTATTACCCGCATT
TTTCCCATTTTCTAATAGTTACGCATCGCTCAACTTGAAGCTACTATCAA
AGCAGATGTCTCTGAGAAAAATGATGTTCTCGACAAACTCACTTTCGAAA
GAGGTATATACCTTCAGATACATTAGTTTAAGAGAAGAATTATGATAATG
ACCTGTAATAACATACCTACAATATAATTTGCATGTCGTTGACAGCTTTG
TAGACCGTTTTTGCTAAGTTAAAGTTACTCTCCGCTACCGGTAACCAACC
ACTCAAGTGAAATAACATGGTTAATGGTCGCGTGTCAACGGAGAATGAAG
TCTGTAGCAGCATTTTGCATTCTCATAGTTCACTTTTGACAATACAATAC
TCAAGTGATTTCTGTAGTGAGAGGTCAGCTACTCTTTTGAATAGGTTAAG
CGATTTCAATATTGCGAAGCAGCTTTTCGTAATGTTGTTGACGTGTTCTT
TCTACGAAAGGTACTGTACAAATAATCTCTAGTATCAACTCTTTCTAGTG
GTTGGCCGTTACTTGTAATTTACACCAACATTTCCACTTTAGATACGACG
GACAGTTCTCAGAAACAATTGCGTGAATTACAAGTCAAATATTTCGCCTT
GAAAGAAAAACACGATGATTTGCTGGAGAAATTGAAATTCTTCACCGGTG
AAAGTGCTGCTGATTTCGAAGAAATACAAGAAGCGTTGCTGCTCATTAAG
GTTAGAATAATTTCTATATCTCATTAGCATTTTTTTTTCAATTTTGGGGC
GAACAAACCTTTATATTGTGAACAATGGCAGTCATCTTTTTGAATAGGTG
TTTTTTTTATCGTAATGGCAAATGAAGCTCTGTTGTAAAATATAAGAATT
TTCACGTTCCCACGTGGCGTGTCTTTTTAATTTTCGCTTGCCCAGGTACC
GTCCAAACTTTCGCGTATCCATGTACCGTCCGAATTATCTTTCACTTTCT
CGAGGGAAAAGCCAAGAATATGCAATGCCATTGAGTGTACCAATGACCGA
TTAAAAACTGCAGACTAAAATTATATAAACAATGACTTAATAAAGTTTAT
CATACAACGTTTATCAATCTTTAGCAAATGATAATTCGGATATACATCGG
ATACTGTGTACTGAATTGAATCTCCCATTTATGGGCAAAAAATAATATTC
GTCCCGGTAAATCTTGTCTTAAAAAGGCTTTCCTGGATAACAGCAAAGAC
ACGTGGGCACGTGGAGAAAAAGGAGGGACGTGGGCACACAGGGAATACAA
TTTATCTGACTTCTTTGCTGGTTTTGATAGGATATTATAAGTGTCTCCTT
CATACCTTTTTATCTGTATAAGATATTGCACTTCTTAGAAGAATAACTAC
GACTTTCATTATCTTAAGTTAAACAGAGGTATGTCGTTGTAAATCGAATG
TAGTTTGAAACTTTTCTTCTTAGACTCGTAAAGAACGTGAAAGTCATGAC
TTGCACTTCCTGGAGAAAGTTGACGACAACGTCAGTCGTGGTAAGTAACA
ACAAAAAAGTGTCTGTCTTTGGGGTCACTTCTTGATCGTGTCACGCCGTA
ATATCGTCGCTGGGCCATAAAACTAGACGATAATTCCTGATTCCAGTTCA
TCTCAGAATAATGTTGGAAGAGCACGTGGTTAAAGAAATTATTGGTCGAA
AAAAGTTATTGGTTGAAAAAGTTATTGGTTGAAAAAGTTATTGGTTGAAA
AAGTTATTGGTTGAAAAAATTATTGGTTAAAAAAGTCATTGGTTAAAATT
ATAATCTTTGAGATTATGAAAAACCCTCCACGAATCCTTTTGGTTGAAAA
CTCTTTTTTTTCCCTCTTTTCTTACAGAGCTACAAAAAGAGAATCAACAA
TTGCAAGCAGCCCATGCAGACACCATCAACGAGTTGGAGAAAACGAGAAG
CATGCTGCTGATTCAGCATAATATCAACAAGGATTACCAAAGAGAGGTAA
AGAAAAACAGTTTTCATAACGTCTTCATAACTTTGTTTTTACTTTTTAAG
ATTCATAGATATTTTATCAATTCTTCAAAACATTTAATGGTGATTTTATG
GCAATAGTAATTCTACAAGTTTGACAACCTAGAGAATTCTCTATTCTGTC
GTTCTTTTACCTTTGAATGTGATTTCTTTGGGGAAGAATGTTTCGGAGAG
GCTATATCTCTTTTTTGTAAGGAAATGTAAAGAAATCTTTATGCTTGTCA
TTTGCAAATTTAAGATGCCATTTAGTGTGCTTAATACTAAGTACAAAATG
ATTTTACTTCGAACTTCTTTCACAAAGGTTGAAGCGACGACGAAGAAAAT
GGAAGAACTGAAGAATGAGTGTGATACGAGAATCGAAGAATATGCTCAAC
TTCTTGATATACGTGCTGAAAGGATCAAGGTAATTTTCAGTTTTCTTCAC
TATACACTTAACGATCCTAGAGCCAACAAAGAGATTGGGTTCGACCACTG
GCCTTTATAAACCTTGGACCAAGCTGTATCAGTCATCTTTGATCGGAGTT
TACTTTTAGTTAGACCCTGATAAACTCGAACTCGACCCTCGTGCATGAAG
CTAATGGTTTGCATCTTAGAAAGTTTGATAGCTGTATTGTTAATGTTTAC
CGATCAATCATTATGTCAGCACTACGCTCTGTTTTGAAGGGGAAGCCTTT
TCAGCCGATATTAGCGAGTTTATTTATTTGCACTTTTGGGGACGGTAGAG
TGACTAAAGCGATTTGGAATGACCCGCAGCTCTGACCCGCAAAATCGAGG
ACGGTGAAAGTGCTAATTTACCGTCTTCCCCACCTGGTCAGGATCTAGTC
CAATTAGAATCTTACCGTCTCCGTCGCAGAAAAACACATACATAAACTCG
ATATTCTTTTTCCCGCCATGGTCTTTAGAGTGAATGCAAGTTGTGTGTGT
GTCGGTTTTAGAGATCAGGTTATTGTAAATTTTCATTGTATAGGTAAATC
TAAATTTGGTTGTTCGATAACTGTTCTTTTGAACTTTCGCCATTATCTCT
TCTTGTGCTCAGAAATTGGAAGGTCAATTGAAAGATGTGGCTTATGGT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_005193	XLOC_005193	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000091	supercontig	sc0000091:392767..402214 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.688467	0.587236	0.513706	0.335336	4.74072	2.4666	3.81821	1.02001	1.4908	1.18879	1.87831	1.65269	2.23562	2.14709	1.53697	2.54112	0	0.962314	1.09445	1.0369	0.356622	0.544714	0.423417	0.225798	4.6733	2.32977	0	0.292531	0.899727	0.000717906

Blast

[Close]

BLAST of TCONS_00009287 vs. Swiss-Prot (Human)
Match: FTM (Protein fantom OS=Homo sapiens GN=RPGRIP1L PE=1 SV=2)

HSP 1 Score: 353.984 bits (907), Expect = 3.275e-107
Identity = 242/583 (41.51%), Postives = 388/583 (66.55%), Query Frame = 3

Query:  126 GARDTSALDMTPVRDEKYD-----GI----TISEAKERQMVGSLSRKELEDRYLRVREENVQLKKTSHKQEAKMKQMATXXXXXXXXXXXXEEGGG----IGFVDHESKDKIDELKTTISSLQKQNDLLKSRLTVAKQQLQTHGKRPSAYDHVKSRVFTNQSSPKKTNAKQQRIREQIRVVEPPPLPSKDLHKTPHPVLPQPRYGHSXXXXXXXXXXXXXDVVDSLRHQLVDYEEKVQYLQEQLTKKEIHHEDSIQQLRQRVSGTQRTTIQENVELIKLQREVRDKVSKLQNLQGKYQNLEDLLKKVKTSHEQVLEEMEKMTSKLKEEQLKNSSLSNELKQGNISQQSLAMKEEQIRDLREEVEMLKEAHGKLLHSTFDAEREREFRTKEKQYQLRIAQLEATIKADVSEKNDVLDKLTFERDTTDSSQKQLRELQVKYFAXXXXXXXXXXXXXFFTGESAADFEEIQEALLLIKTRKERESHDLHFLEKVDDNVSRELQKENQQLQAAHADTINELEKTRSMLLIQHNINKDYQREVEATTKKMEELKNECDTRIEEYAQLLDIRAERIKKLEGQLKDVAYG 1835
            G  D +A D+ PV+D   +     G+    T    K RQ V  +SR+ELEDR+LR+ +EN+ LK+ + KQE K+K+MATKL+RLV D+KR E  GG    +G  D E ++ I++L+  +  L+KQN+ LK+RL  AKQQLQT G R + Y++V+SR+ T +    +    Q+  R+ I+  +       D+ +TPHP+    +YG+SLLEE R E R LE+V+ S R Q+ + E   + L+ QL +KE   E S+ QLR++ +  QR+ I++NVE+IKL +++ +K + L  ++GK+  L++  + ++ SH+ ++   +++  +LKE++LK  SL  +L     S++ +   +++I DL +E E+LKE + KL  S F A  E +++ KE+Q +++IAQLE  +K+D+++K ++LD+L  ERD  +   ++ RELQ++Y   K++ D+L +++K +  E+  + +E+ EALLLIK +KE+++ DL FL KVD  ++++L++  ++LQA HA+T+ ELEKTR+ML++QH INKDYQ EVEA T+KME L+ + + ++E+Y  LLDIRA RI KLE QLKD+AYG
Sbjct:    3 GPTDETAGDL-PVKDTGLNLFGMGGLQETSTTRTMKSRQAVSRVSREELEDRFLRLHDENILLKQHARKQEDKIKRMATKLIRLVNDKKRYERVGGGPKRLG-RDVEMEEMIEQLQEKVHELEKQNETLKNRLISAKQQLQTQGYRQTPYNNVQSRINTGRRKANENAGLQECPRKGIKFQD------ADVAETPHPMFT--KYGNSLLEEARGEIRNLENVIQSQRGQIEELEHLAEILKTQLRRKENEIELSLLQLREQQATDQRSNIRDNVEMIKLHKQLVEKSNALSAMEGKFIQLQEKQRTLRISHDALMANGDELNMQLKEQRLKCCSLEKQLHSMKFSERRIEELQDRINDLEKERELLKENYDKLYDSAFSAAHEEQWKLKEQQLKVQIAQLETALKSDLTDKTEILDRLKTERDQNEKLVQENRELQLQYLEQKQQLDELKKRIKLYNQENDINADELSEALLLIKAQKEQKNGDLSFLVKVDSEINKDLERSMRELQATHAETVQELEKTRNMLIMQHKINKDYQMEVEAVTRKMENLQQDYELKVEQYVHLLDIRAARIHKLEAQLKDIAYG 575

The following BLAST results are available for this feature:

BLAST of TCONS_00009287 vs. Swiss-Prot (Human)

BLAST of TCONS_00009287 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
FTM	3.275e-107	41.51	Protein fantom OS=Homo sapiens GN=RPGRIP1L PE=1 SV...	[more]

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TCONS_00009287 (transcript) - C. hemisphaerica