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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009187 ID=TCONS_00009187|Name=TCONS_00009187|organism=Clytia hemisphaerica|type=transcript|length=1791bpRun BLAST on NCBI protein sequence of TCONS_00009187-protein >TCONS_00009187-protein ID=TCONS_00009187-protein|Name=TCONS_00009187-protein|organism=Clytia hemisphaerica|type=polypeptide|length=496bp EGISYSRIEASKMAAPIFIATLCFMWIVYIWETYLSFRQYKVYRDTDDVPRun BLAST on NCBI transcript from alignment at sc0000091:156215..169475+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009187 ID=TCONS_00009187|Name=TCONS_00009187|organism=Clytia hemisphaerica|type=transcript|length=13261bp|location=Sequence derived from alignment at sc0000091:156215..169475+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000091:156215..169475+ >TCONS_00009187 ID=TCONS_00009187|Name=TCONS_00009187|organism=Clytia hemisphaerica|type=CDS|length=19383bp|location=Sequence derived from alignment at sc0000091:156215..169475+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00009187 vs. Swiss-Prot (Human)
Match: FACE1 (CAAX prenyl protease 1 homolog OS=Homo sapiens GN=ZMPSTE24 PE=1 SV=2) HSP 1 Score: 512.686 bits (1319), Expect = 2.092e-176 Identity = 267/477 (55.97%), Postives = 347/477 (72.75%), Query Frame = 3
Query: 51 IFIATLCFMWIVYIWETYLSFRQYKVYRDTDDVPEELEDYIDEETFEKSRSYQLDKSRFGFIAGLYSQIESTVILWFFCIPLLWKFSGDVNAMIGFDETHEIKRSMLFMVFASIFSTITSLPWSLYSTFVIEEKHGFNKQTLGFFFKDLVKKLVVSXXXXXXXXXXXXXXVKWGGDYFFVYAWLFSLTVSLFIISIYHDYIAPLFDRFITLPEGELRESIEALAKRIEFPLTKIFVVEGSKRSSHSNAYFFGFYKKKVIVLFDTLLKVSPFXXXXXXXXXXXXXXXXXXXXXGNQQDETXXXXXXXXXXXXXXXXXXXXXXXXXXXCSDEEILAILGHELGHWKLNHILKNLAISQVNLLLSFFVFGLLMNNSMLYESFGFYNEMPTLIGLMIIFQFVFSPYNELMGFLMTVLSRRFEFQADEFGKSLGYGVKLQSALIKLHKENLGFPAADKLYSAYHYSHPPLLERLKALQTSNK 1481
IF A L F W VY+WET+L+ RQ ++Y+ T VP EL +D ETFEKSR YQLDKS F F +GLYS+ E T+IL F IP LW+ SG GF +EI +S++F++ A++FS +T LPWSLY+TFVIEEKHGFN+QTLGFF KD +KK VV+ I LP+++ +++I+K GGDYFF+YAWLF+L VSL +++IY DYIAPLFD+F LPEG+L+E IE +AK I+FPLTK++VVEGSKRSSHSNAYF+GF+K K IVLFDTLL+ +E+ + E EGN ++ + K +++GC +EE+LA+LGHELGHWKL H +KN+ ISQ+N L FF+F +L+ L+ +FGFY+ PTLIGL+IIFQF+FSPYNE++ F +TVLSRRFEFQAD F K LG L SALIKL+K+NLGFP +D L+S +HYSHPPLLERL+AL+T +
Sbjct: 19 IFGAVLLFSWTVYLWETFLAQRQRRIYKTTTHVPPELGQIMDSETFEKSRLYQLDKSTFSFWSGLYSETEGTLILLFGGIPYLWRLSGRFCGYAGFGPEYEITQSLVFLLLATLFSALTGLPWSLYNTFVIEEKHGFNQQTLGFFMKDAIKKFVVTQCILLPVSSLLLYIIKIGGDYFFIYAWLFTLVVSLVLVTIYADYIAPLFDKFTPLPEGKLKEEIEVMAKSIDFPLTKVYVVEGSKRSSHSNAYFYGFFKNKRIVLFDTLLEE---YSVLNKDIQEDSGMEPRNEEEGNSEE------------------IKAKVKNKKQGCKNEEVLAVLGHELGHWKLGHTVKNIIISQMNSFLCFFLFAVLIGRKELFAAFGFYDSQPTLIGLLIIFQFIFSPYNEVLSFCLTVLSRRFEFQADAFAKKLGKAKDLYSALIKLNKDNLGFPVSDWLFSMWHYSHPPLLERLQALKTMKQ 474 The following BLAST results are available for this feature:
BLAST of TCONS_00009187 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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