TCONS_00009180 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009180
Unique NameTCONS_00009180
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length842

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009180 ID=TCONS_00009180|Name=TCONS_00009180|organism=Clytia hemisphaerica|type=transcript|length=842bp
TTAATGAGTTTAGTGATGACTTTCTGTTCTAATTCCGTCATTATTATGTT
AGCAAGCACTGGTCCCATAGAACTACCCATACTAACACCATTAATTTGTT
CGTACAATTGCCCATTGCACGAAAAAACAGTTTTTGTACAAGTGTCCTTG
ATCAGTTTCTTTAATGTAGATTTCTTAAGATTTGTTTGAATAAGNTTTTG
TACAAGTGTCCTTGATCAGTTTCTTTAATGTAGATTTCTTAAGATTTGTT
TGAATAAGATTTTGGTTGTATACGCGGTTTAGAATGACGTTAATTGTACG
AGTCAATGGCACGTTTGTAAATAAAGAGGTAACGTCAAATGAAACAAAGA
CATACCCTTCGTCAAACAGGTGTTTAGGGATATCCTTAATTCTAGCTGCT
GCATCAAATGTATCTTTGATTGTGTAATCGTTCATGGTGAGTGGATTTAG
AAGATTGGTTAGGAATTTCCCAACGTTGTAGTGTGTGGAGTTGACGGTGT
CGATAATTGGACGAAATTTAGGTAAGGTTTCGTACTTCTTGTGTATTTTA
GGTAAGCTGTGCGCTCGAGCCGGTTTTGCGTGCTTTGGTCTCATAGAATT
ATACTGTTCATCTGTTATTTCTTCACGTTTATTGATAGTTTTGNGTCTCA
TAGAATTATACTGTTCATCTGTTATCTCTTCACGTTTATTGATAGTTTTA
AGATATTTGCGTAAAGTTCTTAAACGTGTGAAGGTAGGATCCGTTTCTAT
TTTCGAGAATTTAGTTTTATCCTCGAATAAATGTGACATAGATGTACGGT
AATCATTCATATCGATTAGAACAACACCATTTCCTTTGTCTG
Run BLAST on NCBI

protein sequence of TCONS_00009180-protein

>TCONS_00009180-protein ID=TCONS_00009180-protein|Name=TCONS_00009180-protein|organism=Clytia hemisphaerica|type=polypeptide|length=221bp
DKGNGVVLIDMNDYRTSMSHLFEDKTKFSKIETDPTFTRLRTLRKYLKTI
NKREEITDEQYNSMRXKTINKREEITDEQYNSMRPKHAKPARAHSLPKIH
KKYETLPKFRPIIDTVNSTHYNVGKFLTNLLNPLTMNDYTIKDTFDAAAR
IKDIPKHLFDEGYVFVSFDVTSLFTNVPLTRTINVILNRVYNQNLIQTNL
KKSTLKKLIKDTCTKXYSNKS
Run BLAST on NCBI

transcript from alignment at sc0000090:679296..680137

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009180 ID=TCONS_00009180|Name=TCONS_00009180|organism=Clytia hemisphaerica|type=transcript|length=842bp|location=Sequence derived from alignment at sc0000090:679296..680137 (Clytia hemisphaerica)
CAGACAAAGGAAATGGTGTTGTTCTAATCGATATGAATGATTACCGTACA
TCTATGTCACATTTATTCGAGGATAAAACTAAATTCTCGAAAATAGAAAC
GGATCCTACCTTCACACGTTTAAGAACTTTACGCAAATATCTTAAAACTA
TCAATAAACGTGAAGAGATAACAGATGAACAGTATAATTCTATGAGACNC
AAAACTATCAATAAACGTGAAGAAATAACAGATGAACAGTATAATTCTAT
GAGACCAAAGCACGCAAAACCGGCTCGAGCGCACAGCTTACCTAAAATAC
ACAAGAAGTACGAAACCTTACCTAAATTTCGTCCAATTATCGACACCGTC
AACTCCACACACTACAACGTTGGGAAATTCCTAACCAATCTTCTAAATCC
ACTCACCATGAACGATTACACAATCAAAGATACATTTGATGCAGCAGCTA
GAATTAAGGATATCCCTAAACACCTGTTTGACGAAGGGTATGTCTTTGTT
TCATTTGACGTTACCTCTTTATTTACAAACGTGCCATTGACTCGTACAAT
TAACGTCATTCTAAACCGCGTATACAACCAAAATCTTATTCAAACAAATC
TTAAGAAATCTACATTAAAGAAACTGATCAAGGACACTTGTACAAAANCT
TATTCAAACAAATCTTAAGAAATCTACATTAAAGAAACTGATCAAGGACA
CTTGTACAAAAACTGTTTTTTCGTGCAATGGGCAATTGTACGAACAAATT
AATGGTGTTAGTATGGGTAGTTCTATGGGACCAGTGCTTGCTAACATAAT
AATGACGGAATTAGAACAGAAAGTCATCACTAAACTCATTAA

Coding sequence (CDS) from alignment at sc0000090:679296..680137

>TCONS_00009180 ID=TCONS_00009180|Name=TCONS_00009180|organism=Clytia hemisphaerica|type=CDS|length=666bp|location=Sequence derived from alignment at sc0000090:679296..680137 (Clytia hemisphaerica)
GACAAAGGAAATGGTGTTGTTCTAATCGATATGAATGATTACCGTACATC
TATGTCACATTTATTCGAGGATAAAACTAAATTCTCGAAAATAGAAACGG
ATCCTACCTTCACACGTTTAAGAACTTTACGCAAATATCTTAAAACTATC
AATAAACGTGAAGAGATAACAGATGAACAGTATAATTCTATGAGACNCAA
AACTATCAATAAACGTGAAGAAATAACAGATGAACAGTATAATTCTATGA
GACCAAAGCACGCAAAACCGGCTCGAGCGCACAGCTTACCTAAAATACAC
AAGAAGTACGAAACCTTACCTAAATTTCGTCCAATTATCGACACCGTCAA
CTCCACACACTACAACGTTGGGAAATTCCTAACCAATCTTCTAAATCCAC
TCACCATGAACGATTACACAATCAAAGATACATTTGATGCAGCAGCTAGA
ATTAAGGATATCCCTAAACACCTGTTTGACGAAGGGTATGTCTTTGTTTC
ATTTGACGTTACCTCTTTATTTACAAACGTGCCATTGACTCGTACAATTA
ACGTCATTCTAAACCGCGTATACAACCAAAATCTTATTCAAACAAATCTT
AAGAAATCTACATTAAAGAAACTGATCAAGGACACTTGTACAAAANCTTA
TTCAAACAAATCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005154XLOC_005154Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009180-proteinTCONS_00009180-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009180-exon-sc0000090-1491911889:679296..680137TCONS_00009180-exon-sc0000090-1491911889:679296..680137Clytia hemisphaericaexon
TCONS_00009180-exon-sc0000090-1510915933:679296..680137TCONS_00009180-exon-sc0000090-1510915933:679296..680137Clytia hemisphaericaexon
TCONS_00009180-exon-sc0000090-1575043694:679296..680137TCONS_00009180-exon-sc0000090-1575043694:679296..680137Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000090supercontigsc0000090:679296..680137 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.109309	0.190378	0.206994	21.0778	14.5732	14.0067	12.9346	4.9893	8.27076	1.24923	2.85573	0.0372751	0.0774211	0.095476	0.239074	0	0.0862495	0.297896	0.374072	0.162568	0.237885	0.578361	0.941849	0.12035	0.268525	16.2511	17.2205	0.186623	0.104576
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009180 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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