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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009175 ID=TCONS_00009175|Name=TCONS_00009175|organism=Clytia hemisphaerica|type=transcript|length=1647bp
ATCTAGTGGgtatggttttggagtacaattgttttcttttttaaatttta
aatggggatgaaatgaaagtcaattttccagtgaaaCTGGGGTTCCAGTG
GGTCTTTGACAAAGGGTGTCCAAAAGGATTTTCGTGTTTTTCTTGTCTAC
AAGCACGTCACTAAATAGCTTCATGACAGCTGACACAGAATGTCATGATA
ACGTCCATCTAACATCCCTAACGTTCATTAAACGTTAAATgtacgttaaa
acaacgttgtgtgccagctgggtactgACCCCATCTGATTcataatattc
atgacgtaatgttttctaagGGAATACCCTggtttagccagtagtggcac
ttttaaactagacaaaagttgtataaaatttgccactactggcagaaagc
ggggtctttccgtagaaaatattacgtcatgatTATCATGAATTAAATCC
TGTTCGCAAAAATGACCTTACAAATGATAAAAGAATCAAAGCCTAATCTT
TCTGATTAAAATGTTTTGTGGCGTCGAGTATTCTTCGTTACAATCTTTGG
TATATttgattcatttcaaaattccaaaaaCAATTGCAGATCGTTTATca
ccaaaataaaaatcttttgaaacatTATCAACACGCCAATATTCACAAGA
AGGGCCCTGATCCATTCGTACAAACTTTAAACGTTTCCTAAAATCCTTTG
tatgaagaagaaagaaagttGCAGTTGCCCATACAATTTTCAAATCTTCA
ACAAGAAAATCCCCCAATTCTTctttgtaattgtttttttttctgttcac
GAAACACAGATATTTATAGTCCTTATTGATTTCCTTTCTCATGAACAAAT
ATTTATCCTTCTTGAACACTTTTTTATTTCCCATCATTGCGGAAATCGCT
TTGTACCAGTCACCATAAGAAGGGTACAAAAGTGAAGATTTATTTCCTTC
ATGAAAATATTCTGCTACCCAAACCAAACGATCGATCGTCGTCATATTTT
CCTCAACTTTATCCGTAGCTTGGTTTTGGTTTGGAATGAgccttttcaaa
ttttcaatttgtcgGCTTAAATGTTGGACAGTTGCTTCTTTCTCTGTCAT
TTCTTTCTCCATTTCGTTCATTTCTTTCTCCATTTCGTTCAATTTTGTCT
CCGTTtgtaagattttaattttgtgttcattttctaaatctttcattttc
attttccattccTTTTCTTGTTCTTTCTTGTACAGAACCATTTCGTGCTC
TTTGGCTACTAATTGTTTCTCCTTTTCAACTAACTTATTTTGCAGCTCGT
CGTTCTGTTTTTGGAGTTGTTGATCAGCTTGAACTTGACTTAATCGAGAT
TCACGAGAATTCTTTAATTTGAACATCTCAAATTGATGAGATaaagtttg
attttctttttctaactgcatgattttcaacgttttctcGTTCTCAGATT
CCAGTTGTTGAATCTTAAATTCCATTTTGAGTTTCTCAATCTCTTTTTGA
TGTTCATTTTTGAGTTTTGTAATTTCGCTGATCAGCAACTCTGTGCACAT
TCCTCCCACTAGCACTGTGAGCCATATTCCTTTCGTCAGAATACGCAGAA
TCCATTcttcaatttataatttaactATTCAATTAATCTAAGAAGAA Run BLAST on NCBI protein sequence of TCONS_00009175-protein >TCONS_00009175-protein ID=TCONS_00009175-protein|Name=TCONS_00009175-protein|organism=Clytia hemisphaerica|type=polypeptide|length=329bp
MCTELLISEITKLKNEHQKEIEKLKMEFKIQQLESENEKTLKIMQLEKEN
QTLSHQFEMFKLKNSRESRLSQVQADQQLQKQNDELQNKLVEKEKQLVAK
EHEMVLYKKEQEKEWKMKMKDLENEHKIKILQTETKLNEMEKEMNEMEKE
MTEKEATVQHLSRQIENLKRLIPNQNQATDKVEENMTTIDRLVWVAEYFH
EGNKSSLLYPSYGDWYKAISAMMGNKKVFKKDKYLFMRKEINKDYKYLCF
VNRKKNNYKEELGDFLVEDLKIVWATATFFLLHTKDFRKRLKFVRMDQGP
SCEYWRVDNVSKDFYFGDKRSAIVFGILK Run BLAST on NCBI transcript from alignment at sc0000090:550768..552414 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009175 ID=TCONS_00009175|Name=TCONS_00009175|organism=Clytia hemisphaerica|type=transcript|length=1647bp|location=Sequence derived from alignment at sc0000090:550768..552414 (Clytia hemisphaerica)
TTCTTCTTAGATTAATTGAATagttaaattataaattgaagAATGGATTC
TGCGTATTCTGACGAAAGGAATATGGCTCACAGTGCTAGTGGGAGGAATG
TGCACAGAGTTGCTGATCAGCGAAATTACAAAACTCAAAAATGAACATCA
AAAAGAGATTGAGAAACTCAAAATGGAATTTAAGATTCAACAACTGGAAT
CTGAGAACgagaaaacgttgaaaatcatgcagttagaaaaagaaaatcaa
actttATCTCATCAATTTGAGATGTTCAAATTAAAGAATTCTCGTGAATC
TCGATTAAGTCAAGTTCAAGCTGATCAACAACTCCAAAAACAGAACGACG
AGCTGCAAAATAAGTTAGTTGAAAAGGAGAAACAATTAGTAGCCAAAGAG
CACGAAATGGTTCTGTACAAGAAAGAACAAGAAAAggaatggaaaatgaa
aatgaaagatttagaaaatgaacacaaaattaaaatcttacaAACGGAGA
CAAAATTGAACGAAATGGAGAAAGAAATGAACGAAATGGAGAAAGAAATG
ACAGAGAAAGAAGCAACTGTCCAACATTTAAGCcgacaaattgaaaattt
gaaaaggcTCATTCCAAACCAAAACCAAGCTACGGATAAAGTTGAGGAAA
ATATGACGACGATCGATCGTTTGGTTTGGGTAGCAGAATATTTTCATGAA
GGAAATAAATCTTCACTTTTGTACCCTTCTTATGGTGACTGGTACAAAGC
GATTTCCGCAATGATGGGAAATAAAAAAGTGTTCAAGAAGGATAAATATT
TGTTCATGAGAAAGGAAATCAATAAGGACTATAAATATCTGTGTTTCgtg
aacagaaaaaaaaacaattacaaagAAGAATTGGGGGATTTTCTTGTTGA
AGATTTGAAAATTGTATGGGCAACTGCaactttctttcttcttcataCAA
AGGATTTTAGGAAACGTTTAAAGTTTGTACGAATGGATCAGGGCCCTTCT
TGTGAATATTGGCGTGTTGATAatgtttcaaaagatttttattttggtgA
TAAACGATCTGCAATTGtttttggaattttgaaatgaatcaaATATACCA
AAGATTGTAACGAAGAATACTCGACGCCACAAAACATTTTAATCAGAAAG
ATTAGGCTTTGATTCTTTTATCATTTGTAAGGTCATTTTTGCGAACAGGA
TTTAATTCATGATAatcatgacgtaatattttctacggaaagaccccgct
ttctgccagtagtggcaaattttatacaacttttgtctagtttaaaagtg
ccactactggctaaaccAGGGTATTCCcttagaaaacattacgtcatgaa
tattatgAATCAGATGGGGTcagtacccagctggcacacaacgttgtttt
aacgtacATTTAACGTTTAATGAACGTTAGGGATGTTAGATGGACGTTAT
CATGACATTCTGTGTCAGCTGTCATGAAGCTATTTAGTGACGTGCTTGTA
GACAAGAAAAACACGAAAATCCTTTTGGACACCCTTTGTCAAAGACCCAC
TGGAACCCCAGtttcactggaaaattgactttcatttcatccccatttaa
aatttaaaaaagaaaacaattgtactccaaaaccatacCCACTAGAT Coding sequence (CDS) from alignment at sc0000090:550768..552414 >TCONS_00009175 ID=TCONS_00009175|Name=TCONS_00009175|organism=Clytia hemisphaerica|type=CDS|length=990bp|location=Sequence derived from alignment at sc0000090:550768..552414 (Clytia hemisphaerica)
ATGTGCACAGAGTTGCTGATCAGCGAAATTACAAAACTCAAAAATGAACA
TCAAAAAGAGATTGAGAAACTCAAAATGGAATTTAAGATTCAACAACTGG
AATCTGAGAACgagaaaacgttgaaaatcatgcagttagaaaaagaaaat
caaactttATCTCATCAATTTGAGATGTTCAAATTAAAGAATTCTCGTGA
ATCTCGATTAAGTCAAGTTCAAGCTGATCAACAACTCCAAAAACAGAACG
ACGAGCTGCAAAATAAGTTAGTTGAAAAGGAGAAACAATTAGTAGCCAAA
GAGCACGAAATGGTTCTGTACAAGAAAGAACAAGAAAAggaatggaaaat
gaaaatgaaagatttagaaaatgaacacaaaattaaaatcttacaAACGG
AGACAAAATTGAACGAAATGGAGAAAGAAATGAACGAAATGGAGAAAGAA
ATGACAGAGAAAGAAGCAACTGTCCAACATTTAAGCcgacaaattgaaaa
tttgaaaaggcTCATTCCAAACCAAAACCAAGCTACGGATAAAGTTGAGG
AAAATATGACGACGATCGATCGTTTGGTTTGGGTAGCAGAATATTTTCAT
GAAGGAAATAAATCTTCACTTTTGTACCCTTCTTATGGTGACTGGTACAA
AGCGATTTCCGCAATGATGGGAAATAAAAAAGTGTTCAAGAAGGATAAAT
ATTTGTTCATGAGAAAGGAAATCAATAAGGACTATAAATATCTGTGTTTC
gtgaacagaaaaaaaaacaattacaaagAAGAATTGGGGGATTTTCTTGT
TGAAGATTTGAAAATTGTATGGGCAACTGCaactttctttcttcttcata
CAAAGGATTTTAGGAAACGTTTAAAGTTTGTACGAATGGATCAGGGCCCT
TCTTGTGAATATTGGCGTGTTGATAatgtttcaaaagatttttattttgg
tgATAAACGATCTGCAATTGtttttggaattttgaaatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009175-exon-sc0000090-1491911889:550768..552414 | TCONS_00009175-exon-sc0000090-1491911889:550768..552414 | Clytia hemisphaerica | exon |
| TCONS_00009175-exon-sc0000090-1510915933:550768..552414 | TCONS_00009175-exon-sc0000090-1510915933:550768..552414 | Clytia hemisphaerica | exon |
| TCONS_00009175-exon-sc0000090-1575043694:550768..552414 | TCONS_00009175-exon-sc0000090-1575043694:550768..552414 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000090 | supercontig | sc0000090:550768..552414 . |
Blast
The following BLAST results are available for this feature:
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