TCONS_00009127 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009127
Unique NameTCONS_00009127
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1640

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009127 ID=TCONS_00009127|Name=TCONS_00009127|organism=Clytia hemisphaerica|type=transcript|length=1640bp
TTTAgacaattttaaacaaaataataacatcaTCAATCTCAGAGATCACG
CGACAAACATGAAACGAAAGCCGAAAAAGCAGACAAGCCGAAGTATGAGT
AAAGATGAAGAGCAAGTTCACCTGCTATCAGAAACAGATACTTCCGATAA
TAGTTCTCCTTACCGTGAGAAGAAAAACAACGAACGCCAGAAACGCTATC
TTCAACGATTGGATTCAAAAGTGGACATGTCAGCACCAGAAGCTAACGAC
ACGTCATTTGAGGATGTCCCTGTAATGATCATTTGTCCTCATTGTCGAAT
GAAAGTCGTCACAAAGACTAGTTACAGCAAAAAGAAACCTTGTTGTTTCT
GCTGCTGTTCCCAAGAAATCCTCATGATGTTCAAACCGGTTCGACACAAT
TGTCCGAAATGTAATCAACGGATTGCCAAATATAACCGATTCGGATTCAA
TTTTCGAAGTCATTACAAAGTTTATGAGGAGAAAAGTAAAGTCAATCAAC
CAAtcgttgaagaagaaaaaatgcagaataataataataatgatttcAGT
GTGACCACGCCTCAAGAAAAACAACTGAGTGATAAAGAAATGTTATCACC
CGTGGACATAAAGAAACCTACTGCTGTAAACAAACCAcaaaataaaacga
aaaaatttaaaatttcaccaaAAAGTCGAAGCAAGTCTACAAGCTCAACG
TGACAACCTCGTGTTGTGGGTTTTCAAAATGATTTGATTTGAGAATTGTT
TTATTCCAATTGGGAATGGattggacaaaatttattatttcattGACTGT
CACCAAACAAAACAAGACACGGAACAAATAGCATGCTGGGCATTGAACAA
AGGCTAGataattttttgataatttatgtCCCGGAGATTATCAAGAACGA
ACGAATCGTTGAGTTAAAAGCCTTTGCCTGGCCCAAACAAAGGTTCTAGT
GAACTATTGATCAGTGTCcagcagtagcgtagacaggaggggtgcaaaat
ttgtgtaggagagcagacttttatgacacagtaactATCTATTCatatta
taaaaagataattactgtgtcataaaagtctgctctcctacacaaatttt
gcgcccctcctgtctacgctactgtccAGTCCTGAATTATCTTACACGGA
TATCGAAAATTATAGCACCAATAATGTGAGAAAGTGAAGAAATATTTAAT
ATGGGTGACCATGCACTTTCAGAAGCCATGATCAGCTGACAACTCCagat
aaaacaaaatgaaagcAAGTCCAAAAAATGATATCCTGGTTCCATGATAC
TCAAATGAAagcaaaatgtttgatttttcaaaaagctaTATTTCGAACTA
AACTTAGTACATCTTAGTACATATATGCCTGAAATATTTTACTTTCCGGA
CTAACTTTCATTTTATTGACTATCAGCCATTGCAAGAGAAAGATAAGTGA
GTCTTGGTCTCGAATCGGATTCAAGGTATTCAAGGCGACCGGAGACAAgc
acattaaaatttgattggttacaATTACACGTAGTAAAATAATCACTTTT
TCGTACAATTTTAACAATTGTTGTAGATAGGTACATGCACATTTTTAGAA
GATagtgaaaaattcgaaaagaatAATTTCTTAAGCTGTA
Run BLAST on NCBI

protein sequence of TCONS_00009127-protein

>TCONS_00009127-protein ID=TCONS_00009127-protein|Name=TCONS_00009127-protein|organism=Clytia hemisphaerica|type=polypeptide|length=233bp
LDNFKQNNNIINLRDHATNMKRKPKKQTSRSMSKDEEQVHLLSETDTSDN
SSPYREKKNNERQKRYLQRLDSKVDMSAPEANDTSFEDVPVMIICPHCRM
KVVTKTSYSKKKPCCFCCCSQEILMMFKPVRHNCPKCNQRIAKYNRFGFN
FRSHYKVYEEKSKVNQPIVEEEKMQNNNNNDFSVTTPQEKQLSDKEMLSP
VDIKKPTAVNKPQNKTKKFKISPKSRSKSTSST
Run BLAST on NCBI

transcript from alignment at sc0000090:44134..47891-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009127 ID=TCONS_00009127|Name=TCONS_00009127|organism=Clytia hemisphaerica|type=transcript|length=3758bp|location=Sequence derived from alignment at sc0000090:44134..47891- (Clytia hemisphaerica)
TTTAGACAATTTTAAACAAAATAATAACATCATCAATCTCAGAGATCACG
CGACAAACATGAAACGAAAGCCGAAAAAGCAGACAAGCCGAAGTATGAGT
AAAGATGAAGAGCAAGTTCACCTGCTATCAGAAACAGATACTTCCGATAA
TAGTTCTCCTTACCGTGAGAAGAAAAACAACGAACGCCAGAAACGGTAAG
ATATGTTTGCTGGCTCTCAGGCTCCGCTACAAGCAATTAAGTCTGCGACC
ACAGTCGGAAGCGACCCAAAGGCTCCTCTTTCGATAGCTATCTACCCAAA
GGTAGGGGAGGGCCCCACTCCTCCCTGGATTGCTCAACTTACCCTTGATC
CTTCTCTTAATTGCTGAGCATCAATTAGAGAGGCATCAAGTACTATTTTG
AGAATCTTTGGTATGACCTGGCTGGGCGTTGACCCCACAACCTTGCGAAC
CATTAGCCAGATGCTCTACCACTGCACTACTACGGTCGCTATAAGCGCGC
TTTTGAGATTATGGACTTATTTTGGCGAGGATTAATTGGCAAGATATGTC
AAATTAAATACCAACCTAGTTGATATAAAGTAATTTTATTCTCCAAATTA
AATTCCTGCTGTAAGTAATCCTTAAACCACTACAACACCAACAAGCTATA
CTTTCTGGTTTTTTTTCTGCAATTTTGCGAGCTCTGTCAGTATCCTTGAG
TTTTGTTTTCTGTTTTGTTTCTACAGTTTTACGGTTTTACAATCTGCAAT
TTTGTGAGCTCTGTCAGTATCCTTGAGTTGTTTTTTTTTGTGTGTTTTGT
TTCTACAGCATATTTTTTTCATAGAATATAATTATCTTTTTATTTAAATA
TGATTATTTTTACATAGGACGAATAGCCATTGTAAAATATGGAAGAGCCT
GAAAGACAATTAATAATAAATAATAAAATAATAAAATCCAGAGAGAGATT
TTTAAAGGTATTTTAAGAAGGGTTTACCTTTGAGGGAAACTGGGAGTCTT
TAACTTGACGGGTCTTTAAGACAAATGTCAACACGTTTTTGTACACTCCC
TTCATTATTATGAGACAACGTTTATTTATCGTCCATAAATTTTGTTTGAC
ATCAGAATAAATAAACGTCATTGGGGACGTCAGATGGGAGTTGAAGTAAC
ACCGAGACAGATGGGTATAGACTAGCAAACTAGTCTGTTAATTAATCATG
TCAGAGGGCGGGAACATAAAGGCAGCGGGCGTTTGCTAGAATAGGAGCTG
CGTAGGAAAACGAGGAAAAGTTGGTGAGAGGCTGCTGATTAACAGCTTTC
AGCCCTTTCCGCCGACAAAATTTCTTCCTACGCTTACCTAACTCCTACGC
TCACTTTTCCCGCGTGATACCGTTCCAGCCCGACTGACGTGCCAGTCAAT
TTACTTCTATTTCAGCTATCTTCAACGATTGGATTCAAAAGTGGACATGT
CAGCACCAGAAGCTAACGACACGTCATTTGAGGATGTCCCTGTAATGATC
ATTTGTCCTCATTGTCGAATGAAAGTCGTCACAAAGACTAGTTACAGCAA
AAAGAAACCTTGTTGGTGAGCAGAGTTTTTGAGCTACAAAATCTTTGAAG
CCTTCGGACGTTCTTAACTGTTCGAATTTCAAGCCTAAAATGTTCTCAGA
ACGTTCTTACGAGTATTTTTGTGCAGTGCAGAAATGAGCATAACATTTGT
TTAATTAATATTTTAGCCATCAAAGCCTTATGTTCTTCTACGTTTGTTGT
TATAAAAAACGTGCAATTCTCATCGTAATTTTCATAAAAAACCGCCTAAT
CTAACTCCTTGTCGTACCAGAAATTAACAAAAATTCGAACTTTTCTTAAA
AAGACACCCCCTTCTTACAGACCCAGTAGGACTTTTTCAAAGAGTGGGGG
TAAAAAATAATGGAATTAAGCAAGATATCTTTTATGGATAGGCATTTAAA
TTTTGTTTTCAGATCAGAAAATTCAGTGGGGATTGGAAGAATAGCATAAT
AGTTTACAGTGAAGATTATTTGATTATCTTCAATGGGAAAAAAAATTGGA
CGATAATTTTAAATCAGGGACGATATTATGGCCGCAATCTTTTCATTGGG
AAAGGCAGGCTGCATCATTTAAGGCGTGCGATAGCACGTGCACACCTCCG
CACACATCTAAAATCCCTAAGGAGTGCAATCAATCATACCCCATAAATTT
AGATTCCACTACTAAAAGTTGTACATAACACTTCTTATCACACGTCTAAA
TAACAAAAATTAAGGTTTTAGGAGTGTGATTGACCACGCGCCTAGAGTTT
TCAAATGATAAAGCCTGGAAAGGGTCCAAGTGCGTCTGTGAGAAGGCGCG
GTGTAAAAAGCAACACAAAGAAAAGCTGGCCATTTAATTAATATTTCACT
TTAAACAACAGTCAGTGAATGGAAGTTTATCTGTTAAACTTCCATTGCCA
TTTATTTTTGTAGTTTCTGCTGCTGTTCCCAAGAAATCCTCATGATGTTC
AAACCGGTTCGACACAATTGTCCGAAATGTAATCAACGGATTGCCAAATA
TAACCGATTCGGATTCAATTTTCGAAGTCATTACAAAGTTTATGAGGAGA
AAAGTAAAGTCAATCAACCAATCGTTGAAGAAGAAAAAATGCAGAATAAT
AATAATAATGATTTCAGTGTGACCACGCCTCAAGAAAAACAACTGAGTGA
TAAAGAAATGTTATCACCCGTGGACATAAAGAAACCTACTGCTGTAAACA
AACCACAAAATAAAACGAAAAAATTTAAAATTTCACCAAAAAGTCGAAGC
AAGTCTACAAGCTCAACGTGACAACCTCGTGTTGTGGGTTTTCAAAATGA
TTTGATTTGAGAATTGTTTTATTCCAATTGGGAATGGATTGGACAAAATT
TATTATTTCATTGACTGTCACCAAACAAAACAAGACACGGAACAAATAGC
ATGCTGGGCATTGAACAAAGGCTAGATAATTTTTTGATAATTTATGTCCC
GGAGATTATCAAGAACGAACGAATCGTTGAGTTAAAAGCCTTTGCCTGGC
CCAAACAAAGGTTCTAGTGAACTATTGATCAGTGTCCAGCAGTAGCGTAG
ACAGGAGGGGTGCAAAATTTGTGTAGGAGAGCAGACTTTTATGACACAGT
AACTATCTATTCATATTATAAAAAGATAATTACTGTGTCATAAAAGTCTG
CTCTCCTACACAAATTTTGCGCCCCTCCTGTCTACGCTACTGTCCAGTCC
TGAATTATCTTACACGGATATCGAAAATTATAGCACCAATAATGTGAGAA
AGTGAAGAAATATTTAATATGGGTGACCATGCACTTTCAGAAGCCATGAT
CAGCTGACAACTCCAGATAAAACAAAATGAAAGCAAGTCCAAAAAATGAT
ATCCTGGTTCCATGATACTCAAATGAAAGCAAAATGTTTGATTTTTCAAA
AAGCTATATTTCGAACTAAACTTAGTACATCTTAGTACATATATGCCTGA
AATATTTTACTTTCCGGACTAACTTTCATTTTATTGACTATCAGCCATTG
CAAGAGAAAGATAAGTGAGTCTTGGTCTCGAATCGGATTCAAGGTATTCA
AGGCGACCGGAGACAAGCACATTAAAATTTGATTGGTTACAATTACACGT
AGTAAAATAATCACTTTTTCGTACAATTTTAACAATTGTTGTAGATAGGT
ACATGCACATTTTTAGAAGATAGTGAAAAATTCGAAAAGAATAATTTCTT
AAGCTGTA

Coding sequence (CDS) from alignment at sc0000090:44134..47891-

>TCONS_00009127 ID=TCONS_00009127|Name=TCONS_00009127|organism=Clytia hemisphaerica|type=CDS|length=2106bp|location=Sequence derived from alignment at sc0000090:44134..47891- (Clytia hemisphaerica)
TTTCTGCTGCTGTTCCCAAGAAATCCTCATGATGTTCAAACCGGTTCGAC
ACAATTGTCCGAAATGTAATCAACGGATTGCCAAATATAACCGATTCGGA
TTCAATTTTCGAAGTCATTACAAAGTTTATGAGGAGAAAAGTAAAGTCAA
TCAACCAATCGTTGAAGAAGAAAAAATGCAGAATAATAATAATAATGATT
TCAGTGTGACCACGCCTCAAGAAAAACAACTGAGTGATAAAGAAATGTTA
TCACCCGTGGACATAAAGAAACCTACTGCTGTAAACAAACCACAAAATAA
AACGAAAAAATTTAAAATTTCACCAAAAAGTCGAAGCAAGTCTACAAGCT
CAACGTGACTATCTTCAACGATTGGATTCAAAAGTGGACATGTCAGCACC
AGAAGCTAACGACACGTCATTTGAGGATGTCCCTGTAATGATCATTTGTC
CTCATTGTCGAATGAAAGTCGTCACAAAGACTAGTTACAGCAAAAAGAAA
CCTTGTTGTTAGACAATTTTAAACAAAATAATAACATCATCAATCTCAGA
GATCACGCGACAAACATGAAACGAAAGCCGAAAAAGCAGACAAGCCGAAG
TATGAGTAAAGATGAAGAGCAAGTTCACCTGCTATCAGAAACAGATACTT
CCGATAATAGTTCTCCTTACCGTGAGAAGAAAAACAACGAACGCCAGAAA
CGTTTCTGCTGCTGTTCCCAAGAAATCCTCATGATGTTCAAACCGGTTCG
ACACAATTGTCCGAAATGTAATCAACGGATTGCCAAATATAACCGATTCG
GATTCAATTTTCGAAGTCATTACAAAGTTTATGAGGAGAAAAGTAAAGTC
AATCAACCAATCGTTGAAGAAGAAAAAATGCAGAATAATAATAATAATGA
TTTCAGTGTGACCACGCCTCAAGAAAAACAACTGAGTGATAAAGAAATGT
TATCACCCGTGGACATAAAGAAACCTACTGCTGTAAACAAACCACAAAAT
AAAACGAAAAAATTTAAAATTTCACCAAAAAGTCGAAGCAAGTCTACAAG
CTCAACGTGACTATCTTCAACGATTGGATTCAAAAGTGGACATGTCAGCA
CCAGAAGCTAACGACACGTCATTTGAGGATGTCCCTGTAATGATCATTTG
TCCTCATTGTCGAATGAAAGTCGTCACAAAGACTAGTTACAGCAAAAAGA
AACCTTGTTGTTAGACAATTTTAAACAAAATAATAACATCATCAATCTCA
GAGATCACGCGACAAACATGAAACGAAAGCCGAAAAAGCAGACAAGCCGA
AGTATGAGTAAAGATGAAGAGCAAGTTCACCTGCTATCAGAAACAGATAC
TTCCGATAATAGTTCTCCTTACCGTGAGAAGAAAAACAACGAACGCCAGA
AACGTTTCTGCTGCTGTTCCCAAGAAATCCTCATGATGTTCAAACCGGTT
CGACACAATTGTCCGAAATGTAATCAACGGATTGCCAAATATAACCGATT
CGGATTCAATTTTCGAAGTCATTACAAAGTTTATGAGGAGAAAAGTAAAG
TCAATCAACCAATCGTTGAAGAAGAAAAAATGCAGAATAATAATAATAAT
GATTTCAGTGTGACCACGCCTCAAGAAAAACAACTGAGTGATAAAGAAAT
GTTATCACCCGTGGACATAAAGAAACCTACTGCTGTAAACAAACCACAAA
ATAAAACGAAAAAATTTAAAATTTCACCAAAAAGTCGAAGCAAGTCTACA
AGCTCAACGTGACTATCTTCAACGATTGGATTCAAAAGTGGACATGTCAG
CACCAGAAGCTAACGACACGTCATTTGAGGATGTCCCTGTAATGATCATT
TGTCCTCATTGTCGAATGAAAGTCGTCACAAAGACTAGTTACAGCAAAAA
GAAACCTTGTTGTTAGACAATTTTAAACAAAATAATAACATCATCAATCT
CAGAGATCACGCGACAAACATGAAACGAAAGCCGAAAAAGCAGACAAGCC
GAAGTATGAGTAAAGATGAAGAGCAAGTTCACCTGCTATCAGAAACAGAT
ACTTCCGATAATAGTTCTCCTTACCGTGAGAAGAAAAACAACGAACGCCA
GAAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005113XLOC_005113Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009127-proteinTCONS_00009127-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009127-exon-sc0000090-1575043694:47697..47891TCONS_00009127-exon-sc0000090-1575043694:47697..47891Clytia hemisphaericaexon
TCONS_00009127-exon-sc0000090-1575043694:46327..46476TCONS_00009127-exon-sc0000090-1575043694:46327..46476Clytia hemisphaericaexon
TCONS_00009127-exon-sc0000090-1575043694:44134..45428TCONS_00009127-exon-sc0000090-1575043694:44134..45428Clytia hemisphaericaexon
TCONS_00009127-exon-sc0000090-1510915933:47697..47891TCONS_00009127-exon-sc0000090-1510915933:47697..47891Clytia hemisphaericaexon
TCONS_00009127-exon-sc0000090-1510915933:46327..46476TCONS_00009127-exon-sc0000090-1510915933:46327..46476Clytia hemisphaericaexon
TCONS_00009127-exon-sc0000090-1510915933:44134..45428TCONS_00009127-exon-sc0000090-1510915933:44134..45428Clytia hemisphaericaexon
TCONS_00009127-exon-sc0000090-1491911889:47697..47891TCONS_00009127-exon-sc0000090-1491911889:47697..47891Clytia hemisphaericaexon
TCONS_00009127-exon-sc0000090-1491911889:46327..46476TCONS_00009127-exon-sc0000090-1491911889:46327..46476Clytia hemisphaericaexon
TCONS_00009127-exon-sc0000090-1491911889:44134..45428TCONS_00009127-exon-sc0000090-1491911889:44134..45428Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000090supercontigsc0000090:44134..47891 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0991691	0.04847	0.0563619	0.308025	0.334338	0.238194	1.84871	1.93963	1.84243	1.17244	0.200943	1.3105	2.53187	1.62951	0.864401	0.545191	1.19113	1.63962	5.30116	4.58098	2.18132	1.93724	1.53812	1.90242	2.45254	3.30212	0.720865	0.594628	0.165373	0.168216
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009127 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top