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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009100 ID=TCONS_00009100|Name=TCONS_00009100|organism=Clytia hemisphaerica|type=transcript|length=1711bp
aaaatttatcatttagaGATTCGAAACATCAACACCACACTGATCCTCAA
GATGATTAAAAGCAGCTCATGATAAAATATAATGTCTGAATTGAAAAATG
GAAGTGATTGTAGATCATCGCCGTTGTTATCTGGCAATAAAAATCAAGAT
CGGGGAGATGTATGTTCCGGCAAAAATCGAAATCGGGGAGATGGTCAGAA
AATCGGATTCATTTCAACAATGGTTTTATCGATGGCAACTGGACAAGGAG
CTGCCATTATTATTTTACCTAATGATTTGAAAAATCTCGGTCCCGTCATA
TTTGTcatatacacattttttattgtCCTATTGTTAACTTTCATTGGTGT
TCTTactaaagaaattttcacatGTATGGTCAGTTTAACCAAGAATGAAA
ATAGGAACACACTCACTATAACAAAactttcatcaattttcatAAATAGT
ACATTTGGAGTTATAATTCAAGTAATATTCTACATCGTAATGGCGTTAGT
ACCAATAAGTTGTTTGATCGTATCAGCTACGTTACTAAGAGGCATTATTC
CGATGAGTGTACCGTATTATCAAGGTATCCGTATTTGGCTTGTTCCGTGT
TTTATAATAATCACACCGTTGACTTTTATACAGAGCATAGCACAGACACA
AAAATATACACTAATTGGAGTAGCAGCATGTATTATGTCTACGGCAACAT
TATACTGTGTCTGTTTATACCATTCAATAACACAACGAGTTACTATGTCC
GATTTTCTTGATACAGACGATTTTGCTCCCGCGCCTGATTATTTCCGGAC
ATTTGGCCATCTTCTATTCCTTTCGCCCAATATTTATTTACCGATGCTAA
TCATAAATTACAGCAAGCCAAAATTATTCGAGCTCCCTCTGTTTTTATCA
ACTTCACTCTTGTTTTGTACTATCGCACTTTCCGCTTCAATACCGTACGC
TGCATTTCGTCAAGAGATAGAACCTAACCTTTTCGACACGTTACAAAGAC
TGATGACTCAAAAGGTTGTTATGTATTGGTTGCTGTTTTTGGCCAGATTG
TTACTAGCAATTTATTTCATGATTTGTGCTTCTATACCACTCATCGTTTT
GTTCCAAAATATCGAAAGTGCTGTTTCTATGCCAAAAgatATGACCTACA
TCAAGGCCTTATCCCACATTGCACTGATGGCGTTTCTGCTGGCGGCCGCC
TTATTATTCCCTTTCATGGAACCGATGATCACGTTAACCGGTAGTTTCCC
GATTTGCGTAATCGGAATAAGTATCCCGATTTTATTGTATTATTTCATGG
CTGACAGACTTTCGTTATGTATGAAAATTGTTTTGGTGACCGTTGGCATA
GCAACCTTTTTGTCTAGCCTGGTGACAACGTATTTTAGCCTGAGAGAATT
ACTTGTGTTATTTAATAAAGAATATTATGAAAAATGGCATCAACAAAAAG
TACCCTGATGAGCCTTCATGCACGATTCAGTTTTAATATATATAtaagat
atttaattttgatGTGGTAATATTTTGTTTAATCTCGTCCCGAAACGTAC
ATTCATAAGtaaaagcccgaaggactagaagCGAATCTTTATCCCTtttt
caggcaagaaaaagttgcaataatttcaaaacgagacaagtgatgttcgt
gacgtaatttatgaaacggTCTATATACAGCAGTATTTTTGACGACGAAA
ATCAAGAagcg Run BLAST on NCBI protein sequence of TCONS_00009100-protein >TCONS_00009100-protein ID=TCONS_00009100-protein|Name=TCONS_00009100-protein|organism=Clytia hemisphaerica|type=polypeptide|length=458bp
MSELKNGSDCRSSPLLSGNKNQDRGDVCSGKNRNRGDGQKIGFISTMVLS
MATGQGAAIIILPNDLKNLGPVIFVIYTFFIVLLLTFIGVLTKEIFTCMV
SLTKNENRNTLTITKLSSIFINSTFGVIIQVIFYIVMALVPISCLIVSAT
LLRGIIPMSVPYYQGIRIWLVPCFIIITPLTFIQSIAQTQKYTLIGVAAC
IMSTATLYCVCLYHSITQRVTMSDFLDTDDFAPAPDYFRTFGHLLFLSPN
IYLPMLIINYSKPKLFELPLFLSTSLLFCTIALSASIPYAAFRQEIEPNL
FDTLQRLMTQKVVMYWLLFLARLLLAIYFMICASIPLIVLFQNIESAVSM
PKDMTYIKALSHIALMAFLLAAALLFPFMEPMITLTGSFPICVIGISIPI
LLYYFMADRLSLCMKIVLVTVGIATFLSSLVTTYFSLRELLVLFNKEYYE
KWHQQKVP Run BLAST on NCBI transcript from alignment at sc0000090:387233..391307+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00009100 ID=TCONS_00009100|Name=TCONS_00009100|organism=Clytia hemisphaerica|type=transcript|length=4075bp|location=Sequence derived from alignment at sc0000090:387233..391307+ (Clytia hemisphaerica)
aaaatttatcatttagaGATTCGAAACATCAACACCACACTGATCCTCAA
GATGATTAAAAGCAGCTCATGATAAAATATAATGTCTGAATTGAAAAATG
GAAGTGATTGTAGATCATCGCCGTTGTTATCTGGCAATAAAAATCAAGAT
CGGGGAGATGTATGTTCCGGCAAAAATCGAAATCGGGGAGATGGTCAGAA
AATCGGATTCATTTCAACAATGGTTTTATCGATGGCAACTGGACAAGGAG
CTGCCATTATTATTTTACCTAATGATTTGAAAAATCTCGGTCCCGTCATA
TTTGTcatatacacattttttattgtCCTATTGTTAACTTTCATTGGTGT
TCTTactaaagaaattttcacatGTATGGTCAGTTTAACCAAGAATGAAA
ATAGGAACACACTCACTATAACAAAactttcatcaattttcatAAATAGT
ACATTTGGAGTTATAATTCAAGTAATATTCTACATCGTAATGGCGTTAGT
ACCAATAAGTTGTTTGATCGTATCAGCTACGTTACTAAGAGGCATTATTC
CGATGAGTGTACCGTATTATCAAGGTATCCGTATTTGGCTTGTTCCGTGT
TTTATAATAATCACACCGTTGACTTTTATACAGAGCATAGCACAGACACA
AAAATATACACTAATTGGAGTAGCAGCATGTATTATGTCTACGGCAACAT
TATACTGTGTCTGTTTATACCATTCAATAACACAACGAGTTACTATGTCC
GATTTTCTTGATACAGACGATTTTGCTCCCGCGCCTGATTATTTCCGGAC
ATTTGGCCATCTTCTATTCCTTTCGCCCAATATTTATTTACCGATGCTAA
TCATAAATTACAGCAAGCCAAAATTATTCGAGCTCCCTCTGTTTTTATCA
ACTTCACTCTTGTTTTGTACTATCGCACTTTCCGCTTCAATACCGTACGC
TGCATTTCGTCAAGAGATAGAACCTAACCTTTTCGACACGTTACAAAGAC
TGATGACTCAAAAGGTTGTTATGTATTGGTTGCTGTTTTTGGCCAGATTG
TTACTAGCAATTTATTTCATGATTTGTGCTTCTATACCACTCATCGTTTT
GTTCCAAAATATCGAAAGTGCTGTTTCTATGCCAAAAggtaaaattcttt
tttttacttttaaaatgtcTTTTACTGATCTtcctagactatgttatagt
ctaagacgaatcactatctaagaaaaaagcccaaagccgaagaaaattcg
caaacgggttttttgccgaaaagagtttacagtcagAGTTTACAGGTAGA
GTTGTCAGCCGTTTCtccgaaactctcccgccgattttttcccgtatacc
gccatacCCCCATAtcttcccgcctttactatgtTCTTTTTCGATTTAAA
CATTGTGCGCAACTAATAGTTTGCCGATCCTGCATTTGCAAGTATCTTGG
TAGAccaagacacccccttctcatcacagacccggtagaatcttttcagc
cagtggggataaaaataacagactgaaGCTCGAAAGAATCGATATTCTCA
TAATTTTTATgaatggggatttcaattcttttgtttccaagtcagaaaat
tcagtgaggatcatagatttataagcccgaagggctagatgtcgggcttt
aagccatcgcaggcccaaaaaaaaaaatttgaatatcggaaaaaatattt
ttgctattgttttcgaaattctattataatgtcatgtgacttaggtagga
tttcctacctaatcgcacgatgggttattttttcttatttggcacgccct
caaagagagcaattaatcgttaattgcattctgtagagagcaattaatcg
ttaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNaacgttttaattgcattcgaaatttattttgagagaaagaaaatca
ataaacaacaataaaagaaagacacatagagaagagaaaaatataaaaat
ctcagtcctaatttctttaatttactttcctaactgggaaaaagtagtga
aagccattgtgcgattagctcgtaatcacataataactcgtacaattcga
aaattgcactcgtgatttttttgtttcgaattttcctcgtcctttcggac
tcggaaaatcaataacaaaaaaacactcgtgcaattatattcgaattgca
ctcgttatcatgtgattacatatactaaccacggcacacttttcagcaaa
agcttgACATCTAGTcattcgggctttataaatctatggtggagatggga
aaaatagtaaatatttcaCATtgaggggggggtttcagggggtacccgat
tccgtaattccgccaattttttctccaatttccgccacaccgtcttaaat
tgaaccaaaattccgtcaccgaaaatccctttgaaattcaatatttttgt
cgaaaattccgcaaattttgaaaatcttttaccaattccgaaattccgca
aattttgaaaatcttttaccaattccgaaattccgcaaatttttttgcta
aattccgtttttccgcaccaaaattgtctaattttccgtctccgtcagag
aacccaatttccgtaattccgtctaaattttcgccaaattccgccactcc
gtccgaaaaaagggctgattccgctcctccgccaaccgtgAAACCCCCCC
cattgaggattggtttatttaattattttcagtggggacaaaagttGGAG
GATATTTTTCCACCGGTGACGatattttgactaatttttccagtgggtct
gtaagAAGGGGTAACCAAGCTGTGATAGCAGAAACATCAAGATAAGAAAA
TAATCTACAGGCTATCTCAAGCGTCGTCAATTAAAGAAAAGCAAGGCCAT
TGCCACAGAGCAAAAGAAGAAATAGTTTACGACGTACTTTTTCTGAGGTT
GAAATGTCCAAACAGAGGAAGGCGTCCTTTAAATTTCATTGATTGCATTG
TCAGAGAAACTAATGTCCGGCTAGAAGATCTGCCAACAATGATGAATGAT
AGGGAAGAGGTGGCAGGATGTTGTGAAGGTGtactcgactgcggtcgcat
aAACCAAACCAAGAACAGTATTAGGCTTCAAACTAAAAAGgtcaagaaca
tccaaaagccTTAAAACAAACGTGTATTAATCgacaaaaaaagattattt
tcgGTCGTTGAATTTTAGAATAGAAATGAAAGCGAATGCCCGCCCGATAT
CGCTTAATATAAGAGAAGTGATTGTAGATCATCAGACAAtcaaaattggt
ctttttgaaTTGCttctaaaaacacttttttcatgttttaattttctttc
agatATGACCTACATCAAGGCCTTATCCCACATTGCACTGATGGCGTTTC
TGCTGGCGGCCGCCTTATTATTCCCTTTCATGGAACCGATGATCACGTTA
ACCGGTAGTTTCCCGATTTGCGTAATCGGAATAAGTATCCCGATTTTATT
GTATTATTTCATGGCTGACAGACTTTCGTTATGTATGAAAATTGTTTTGG
TGACCGTTGGCATAGCAACCTTTTTGTCTAGCCTGGTGACAACGTATTTT
AGCCTGAGAGAATTACTTGTGTTATTTAATAAAGAATATTATGAAAAATG
GCATCAACAAAAAGTACCCTGATGAGCCTTCATGCACGATTCAGTTTTAA
TATATATAtaagatatttaattttgatGTGGTAATATTTTGTTTAATCTC
GTCCCGAAACGTACATTCATAAGtaaaagcccgaaggactagaagCGAAT
CTTTATCCCTttttcaggcaagaaaaagttgcaataatttcaaaacgaga
caagtgatgttcgtgacgtaatttatgaaacggTCTATATACAGCAGTAT
TTTTGACGACGAAAATCAAGAagcg Coding sequence (CDS) from alignment at sc0000090:387233..391307+ >TCONS_00009100 ID=TCONS_00009100|Name=TCONS_00009100|organism=Clytia hemisphaerica|type=CDS|length=2754bp|location=Sequence derived from alignment at sc0000090:387233..391307+ (Clytia hemisphaerica)
ATGTCTGAATTGAAAAATGGAAGTGATTGTAGATCATCGCCGTTGTTATC
TGGCAATAAAAATCAAGATCGGGGAGATGTATGTTCCGGCAAAAATCGAA
ATCGGGGAGATGGTCAGAAAATCGGATTCATTTCAACAATGGTTTTATCG
ATGGCAACTGGACAAGGAGCTGCCATTATTATTTTACCTAATGATTTGAA
AAATCTCGGTCCCGTCATATTTGTcatatacacattttttattgtCCTAT
TGTTAACTTTCATTGGTGTTCTTactaaagaaattttcacatGTATGGTC
AGTTTAACCAAGAATGAAAATAGGAACACACTCACTATAACAAAactttc
atcaattttcatAAATAGTACATTTGGAGTTATAATTCAAGTAATATTCT
ACATCGTAATGGCGTTAGTACCAATAAGTTGTTTGATCGTATCAGCTACG
TTACTAAGAGGCATTATTCCGATGAGTGTACCGTATTATCAAGGTATCCG
TATTTGGCTTGTTCCGTGTTTTATAATAATCACACCGTTGACTTTTATAC
AGAGCATAGCACAGACACAAAAATATACACTAATTGGAGTAGCAGCATGT
ATTATGTCTACGGCAACATTATACTGTGTCTGTTTATACCATTCAATAAC
ACAACGAGTTACTATGTCCGATTTTCTTGATACAGACGATTTTGCTCCCG
CGCCTGATTATTTCCGGACATTTGGCCATCTTCTATTCCTTTCGCCCAAT
ATTTATTTACCGATGCTAATCATAAATTACAGCAAGCCAAAATTATTCGA
GCTCCCTCTGTTTTTATCAACTTCACTCTTGTTTTGTACTATCGCACTTT
CCGCTTCAATACCGTACGCTGCATTTCGTCAAGAGATAGAACCTAACCTT
TTCGACACGTTACAAAGACTGATGACTCAAAAGGTTGTTATGTATTGGTT
GCTGTTTTTGGCCAGATTGTTACTAGCAATTTATTTCATGATTTGTGCTT
CTATACCACTCATCGTTTTGTTCCAAAATATCGAAAGTGCTGTTTCTATG
CCAAAAgatATGACCTACATCAAGGCCTTATCCCACATTGCACTGATGGC
GTTTCTGCTGGCGGCCGCCTTATTATTCCCTTTCATGGAACCGATGATCA
CGTTAACCGGTAGTTTCCCGATTTGCGTAATCGGAATAAGTATCCCGATT
TTATTGTATTATTTCATGGCTGACAGACTTTCGTTATGTATGAAAATTGT
TTTGGTGACCGTTGGCATAGCAACCTTTTTGTCTAGCCTGGTGACAACGT
ATTTTAGCCTGAGAGAATTACTTGTGTTATTTAATAAAGAATATTATGAA
AAATGGCATCAACAAAAAGTACCCTGAATGTCTGAATTGAAAAATGGAAG
TGATTGTAGATCATCGCCGTTGTTATCTGGCAATAAAAATCAAGATCGGG
GAGATGTATGTTCCGGCAAAAATCGAAATCGGGGAGATGGTCAGAAAATC
GGATTCATTTCAACAATGGTTTTATCGATGGCAACTGGACAAGGAGCTGC
CATTATTATTTTACCTAATGATTTGAAAAATCTCGGTCCCGTCATATTTG
TcatatacacattttttattgtCCTATTGTTAACTTTCATTGGTGTTCTT
actaaagaaattttcacatGTATGGTCAGTTTAACCAAGAATGAAAATAG
GAACACACTCACTATAACAAAactttcatcaattttcatAAATAGTACAT
TTGGAGTTATAATTCAAGTAATATTCTACATCGTAATGGCGTTAGTACCA
ATAAGTTGTTTGATCGTATCAGCTACGTTACTAAGAGGCATTATTCCGAT
GAGTGTACCGTATTATCAAGGTATCCGTATTTGGCTTGTTCCGTGTTTTA
TAATAATCACACCGTTGACTTTTATACAGAGCATAGCACAGACACAAAAA
TATACACTAATTGGAGTAGCAGCATGTATTATGTCTACGGCAACATTATA
CTGTGTCTGTTTATACCATTCAATAACACAACGAGTTACTATGTCCGATT
TTCTTGATACAGACGATTTTGCTCCCGCGCCTGATTATTTCCGGACATTT
GGCCATCTTCTATTCCTTTCGCCCAATATTTATTTACCGATGCTAATCAT
AAATTACAGCAAGCCAAAATTATTCGAGCTCCCTCTGTTTTTATCAACTT
CACTCTTGTTTTGTACTATCGCACTTTCCGCTTCAATACCGTACGCTGCA
TTTCGTCAAGAGATAGAACCTAACCTTTTCGACACGTTACAAAGACTGAT
GACTCAAAAGGTTGTTATGTATTGGTTGCTGTTTTTGGCCAGATTGTTAC
TAGCAATTTATTTCATGATTTGTGCTTCTATACCACTCATCGTTTTGTTC
CAAAATATCGAAAGTGCTGTTTCTATGCCAAAAgatATGACCTACATCAA
GGCCTTATCCCACATTGCACTGATGGCGTTTCTGCTGGCGGCCGCCTTAT
TATTCCCTTTCATGGAACCGATGATCACGTTAACCGGTAGTTTCCCGATT
TGCGTAATCGGAATAAGTATCCCGATTTTATTGTATTATTTCATGGCTGA
CAGACTTTCGTTATGTATGAAAATTGTTTTGGTGACCGTTGGCATAGCAA
CCTTTTTGTCTAGCCTGGTGACAACGTATTTTAGCCTGAGAGAATTACTT
GTGTTATTTAATAAAGAATATTATGAAAAATGGCATCAACAAAAAGTACC
CTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00009100-exon-sc0000090-1491911889:387233..388370 | TCONS_00009100-exon-sc0000090-1491911889:387233..388370 | Clytia hemisphaerica | exon |
| TCONS_00009100-exon-sc0000090-1510915933:387233..388370 | TCONS_00009100-exon-sc0000090-1510915933:387233..388370 | Clytia hemisphaerica | exon |
| TCONS_00009100-exon-sc0000090-1575043694:387233..388370 | TCONS_00009100-exon-sc0000090-1575043694:387233..388370 | Clytia hemisphaerica | exon |
| TCONS_00009100-exon-sc0000090-1491911889:390735..391307 | TCONS_00009100-exon-sc0000090-1491911889:390735..391307 | Clytia hemisphaerica | exon |
| TCONS_00009100-exon-sc0000090-1510915933:390735..391307 | TCONS_00009100-exon-sc0000090-1510915933:390735..391307 | Clytia hemisphaerica | exon |
| TCONS_00009100-exon-sc0000090-1575043694:390735..391307 | TCONS_00009100-exon-sc0000090-1575043694:390735..391307 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000090 | supercontig | sc0000090:387233..391307 + |
Blast
The following BLAST results are available for this feature:
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