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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00009094 ID=TCONS_00009094|Name=TCONS_00009094|organism=Clytia hemisphaerica|type=transcript|length=2977bpRun BLAST on NCBI transcript from alignment at sc0000090:294040..335991+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00009094 ID=TCONS_00009094|Name=TCONS_00009094|organism=Clytia hemisphaerica|type=transcript|length=41952bp|location=Sequence derived from alignment at sc0000090:294040..335991+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00009094 vs. Swiss-Prot (Human)
Match: SCAM2 (Secretory carrier-associated membrane protein 2 OS=Homo sapiens GN=SCAMP2 PE=1 SV=2) HSP 1 Score: 181.03 bits (458), Expect = 8.848e-50 Identity = 133/320 (41.56%), Postives = 181/320 (56.56%), Query Frame = 3
Query: 72 MSGQDINPFASPEDVNPFADPSVQAQTAPP--AQQEYNPFDGKMAXXXXXXXXXTYNNPPVSY--GNTAPATIDPQTAPTYQSKPFGGSVVAQDNTMRQRQEELERKAAELDKKEQELKQVQTNLXXXXXXXXXXXXXXXXX-XXYHDISADIPIQSQKTAKMVFYVWQLYCLTLLFNFICAMAYLXXXXXXXXXXXXXSILYLVLFPPMSFLCWYRPLYKALKNDSSXXXXXXXXXXXXXXXXXALYAIGIPGLGTVGWINGASFADDGHXXXXXXXXXXXXXXXXXXILKVILLRKIHHFYRSSGASLQKAQSEFATG 1016
MS D NPFA P DVNPF DPSV T P E+NPF A PV+ G++ PA + P PT Q P AQ +RQ QEEL+RKAAEL++KE+EL+ NL N P + CFY D S +IP Q+ KM++Y+W L+ +TL N + +A+ + G SIL+ ++F P +FLCWYRP+YKA ++D+SF++F+FFF+FF QI + +GIPGLG GWI S D+ A++ +M A FTL +L V LL+++H YR +GAS Q+AQ EF+ G
Sbjct: 1 MSAFDTNPFADPVDVNPFQDPSVTQLTNAPQGGLAEFNPFSETNAATTV----------PVTQLPGSSQPAVLQPSVEPT-QPTPQAVVSAAQAGLLRQ-QEELDRKAAELERKERELQNTVANLHVRQNNWPPLPSWCPVKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAWFSGNSSKGVDFGL-SILWFLIFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFVFFCQIGIYIIQLVGIPGLGDSGWIAALSTLDNHSLAISVIMMVVAGFFTLCAVLSVFLLQRVHSLYRRTGASFQQAQEEFSQG 307 The following BLAST results are available for this feature:
BLAST of TCONS_00009094 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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