TCONS_00009046 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009046
Unique NameTCONS_00009046
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length705

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009046 ID=TCONS_00009046|Name=TCONS_00009046|organism=Clytia hemisphaerica|type=transcript|length=705bp
TGCTGCGAGAATTGCATTCTCGGCTGCCGTCTCTTTGTCAAGCAGTAAAA
ATGGTAGATATGTTGCGATTGGAATTTCTAGTGAGTGGAAGTGAAAGTGC
ACATACAACATAATCTAGCATAATAAGAACCATAAACAACAACAGTTATC
TTTTCAGAGCTTTCATAATTTCGATTGAAGAAAAGCATAACTTTTCTTGT
ATCCTTTTCAGTGGATATGTTCAGTTATATATATTGAAAAAGGTGGCAAT
ATGCAGGTTTTCTCCATGGTTGATGGTATATAACCGTGAAATCAGCCCAG
CTGGGTAACTTACATCAGTGATCAGTGGAGGCTagcatgcatagccctca
aatgaatgacctggctggtcattaaaatataaaCTTTAATCTccaaacaa
aaatggtagagtaagaGCTGCGAAAGGAGACAAACGGAGCTGTGCTtagt
tgatttgttttgaaattttgctgctttgattggtcagtcatttgatggct
atgcatgtttacctccactgatgcaagttagcCGACTTCATGGTAGTATA
TAGTGTTAATTGGAGGGGGGTTAATTTTAGAAGCAAGTAAGGCCATCGCC
AGACGttcgcgctcgataggatcgttcatcggaacggctcgatgacggat
caatatgtgatcgatggatggattacttaacgatccggataggagatcaa
tagag
Run BLAST on NCBI

transcript from alignment at sc0000089:15819..16523

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009046 ID=TCONS_00009046|Name=TCONS_00009046|organism=Clytia hemisphaerica|type=transcript|length=705bp|location=Sequence derived from alignment at sc0000089:15819..16523 (Clytia hemisphaerica)
ctctattgatctcctatccggatcgttaagtaatccatccatcgatcaca
tattgatccgtcatcgagccgttccgatgaacgatcctatcgagcgcgaa
CGTCTGGCGATGGCCTTACTTGCTTCTAAAATTAACCCCCCTCCAATTAA
CACTATATACTACCATGAAGTCGgctaacttgcatcagtggaggtaaaca
tgcatagccatcaaatgactgaccaatcaaagcagcaaaatttcaaaaca
aatcaactaAGCACAGCTCCGTTTGTCTCCTTTCGCAGCtcttactctac
catttttgtttggAGATTAAAGtttatattttaatgaccagccaggtcat
tcatttgagggctatgcatgctAGCCTCCACTGATCACTGATGTAAGTTA
CCCAGCTGGGCTGATTTCACGGTTATATACCATCAACCATGGAGAAAACC
TGCATATTGCCACCTTTTTCAATATATATAACTGAACATATCCACTGAAA
AGGATACAAGAAAAGTTATGCTTTTCTTCAATCGAAATTATGAAAGCTCT
GAAAAGATAACTGTTGTTGTTTATGGTTCTTATTATGCTAGATTATGTTG
TATGTGCACTTTCACTTCCACTCACTAGAAATTCCAATCGCAACATATCT
ACCATTTTTACTGCTTGACAAAGAGACGGCAGCCGAGAATGCAATTCTCG
CAGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005058XLOC_005058Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009046-exon-sc0000089-1491911889:15819..16523TCONS_00009046-exon-sc0000089-1491911889:15819..16523Clytia hemisphaericaexon
TCONS_00009046-exon-sc0000089-1510915933:15819..16523TCONS_00009046-exon-sc0000089-1510915933:15819..16523Clytia hemisphaericaexon
TCONS_00009046-exon-sc0000089-1575043694:15819..16523TCONS_00009046-exon-sc0000089-1575043694:15819..16523Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089supercontigsc0000089:15819..16523 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.226624	0.348416	0.743844	0.336036	0.108875	0.507516	0.324902	0.396816	0.256889	0.316309	1.09189	0.851758	0.37641	0.709512	0.100479	0.363811	0.359085	0.62492	0.125337	0.683353	0.541061	0.743938	0.201821	0.313635	0.853232	0.584874	0	0.491254	0.101734	0.408304
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009046 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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