TCONS_00009040 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009040
Unique NameTCONS_00009040
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length689

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009040 ID=TCONS_00009040|Name=TCONS_00009040|organism=Clytia hemisphaerica|type=transcript|length=689bp
CAAGCGTTAGTTTATTTGGTGCCAGGGGTATTGAATTGTTCCAGGGCAAA
CAACACAATTACGAAATACGAATGTTATTTTAAACAATGGGTTAATTGGT
GTAATTGTTTTCAAGAGATAGTGCCATTACCAGCAAAAATTCAACATATC
ATTTTGTTTATAGTCGCATCGGTACAACAAGCAAAGTCTTATCCGGTAAT
AGAGTCAACCCTAATGGCCATAAAATATTTCCACAGCGTGTCGGTCATGc
attaaaacattcgaaaatgttAGAACATGTTTTAGAGGCGGCAAAAAGAT
TGGTGGGGAAGAGCGCTATAAAGAAGGAACCTGTCACAGTAGACATGTTA
AGGAGAATGGTGAAAGTTTTGTCAACATCGAAGAATAACCTCAAAAGCTT
GAGATTGACTACGATTTTACTTACGTCTTTCGCTGGGTTTTTACGATTTT
CTGAATGTGTGAATTTACGAAGATCcgatataaaattttttgccaCACAT
GctgttctttttattgaaaagagtAAAACTGATATTTATAGGGTCGGACA
TTGGTTACATTTGGCAAGATTANCGAATGTGTGAATTTACGAAGATCtga
tataaaaatttttttgccacaCATGctgttctttttattgaaaagagtAA
AACTGATATTTATAGGGTCGGACATTGGTTACATTTGGC
Run BLAST on NCBI

protein sequence of TCONS_00009040-protein

>TCONS_00009040-protein ID=TCONS_00009040-protein|Name=TCONS_00009040-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
MLEHVLEAAKRLVGKSAIKKEPVTVDMLRRMVKVLSTSKNNLKSLRLTTI
LLTSFAGFLRFSECVNLRRSDIKFFATHAVLFIEKSKTDIYRVGHWLHLA
RLXNV
Run BLAST on NCBI

transcript from alignment at sc0000089:471625..472313-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009040 ID=TCONS_00009040|Name=TCONS_00009040|organism=Clytia hemisphaerica|type=transcript|length=689bp|location=Sequence derived from alignment at sc0000089:471625..472313- (Clytia hemisphaerica)
CAAGCGTTAGTTTATTTGGTGCCAGGGGTATTGAATTGTTCCAGGGCAAA
CAACACAATTACGAAATACGAATGTTATTTTAAACAATGGGTTAATTGGT
GTAATTGTTTTCAAGAGATAGTGCCATTACCAGCAAAAATTCAACATATC
ATTTTGTTTATAGTCGCATCGGTACAACAAGCAAAGTCTTATCCGGTAAT
AGAGTCAACCCTAATGGCCATAAAATATTTCCACAGCGTGTCGGTCATGC
ATTAAAACATTCGAAAATGTTAGAACATGTTTTAGAGGCGGCAAAAAGAT
TGGTGGGGAAGAGCGCTATAAAGAAGGAACCTGTCACAGTAGACATGTTA
AGGAGAATGGTGAAAGTTTTGTCAACATCGAAGAATAACCTCAAAAGCTT
GAGATTGACTACGATTTTACTTACGTCTTTCGCTGGGTTTTTACGATTTT
CTGAATGTGTGAATTTACGAAGATCCGATATAAAATTTTTTGCCACACAT
GCTGTTCTTTTTATTGAAAAGAGTAAAACTGATATTTATAGGGTCGGACA
TTGGTTACATTTGGCAAGATTANCGAATGTGTGAATTTACGAAGATCTGA
TATAAAAATTTTTTTGCCACACATGCTGTTCTTTTTATTGAAAAGAGTAA
AACTGATATTTATAGGGTCGGACATTGGTTACATTTGGC

Coding sequence (CDS) from alignment at sc0000089:471625..472313-

>TCONS_00009040 ID=TCONS_00009040|Name=TCONS_00009040|organism=Clytia hemisphaerica|type=CDS|length=318bp|location=Sequence derived from alignment at sc0000089:471625..472313- (Clytia hemisphaerica)
ATGTTAGAACATGTTTTAGAGGCGGCAAAAAGATTGGTGGGGAAGAGCGC
TATAAAGAAGGAACCTGTCACAGTAGACATGTTAAGGAGAATGGTGAAAG
TTTTGTCAACATCGAAGAATAACCTCAAAAGCTTGAGATTGACTACGATT
TTACTTACGTCTTTCGCTGGGTTTTTACGATTTTCTGAATGTGTGAATTT
ACGAAGATCCGATATAAAATTTTTTGCCACACATGCTGTTCTTTTTATTG
AAAAGAGTAAAACTGATATTTATAGGGTCGGACATTGGTTACATTTGGCA
AGATTANCGAATGTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005053XLOC_005053Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009040-proteinTCONS_00009040-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009040-exon-sc0000089-1575043694:471625..472313TCONS_00009040-exon-sc0000089-1575043694:471625..472313Clytia hemisphaericaexon
TCONS_00009040-exon-sc0000089-1510915933:471625..472313TCONS_00009040-exon-sc0000089-1510915933:471625..472313Clytia hemisphaericaexon
TCONS_00009040-exon-sc0000089-1491911889:471625..472313TCONS_00009040-exon-sc0000089-1491911889:471625..472313Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089supercontigsc0000089:471625..472313 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.73427	1.87187	1.44818	1.31177	0.124629	0.0787641	0.307824	0.522839	0.166356	0.308596	0.175365	0.519601	0.314998	0.513711	0.407657	0.961181	0.917645	0.609178	0.748505	0.246654	0.5562	0.614323	1.6226	1.26588	0.338087	0.0842563	0.202696	0	1.72352	0.856113
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013762Integrase-like_cat
IPR011010DNA_brk_join_enz
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006310DNA recombination
GO:0015074DNA integration
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006310 DNA recombination
molecular_function GO:0003677 DNA binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009040 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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