TCONS_00009036 (transcript) - C. hemisphaerica

Overview
NameTCONS_00009036
Unique NameTCONS_00009036
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length381

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00009036 ID=TCONS_00009036|Name=TCONS_00009036|organism=Clytia hemisphaerica|type=transcript|length=381bp
GTGGAACAGAAGCAGTTGACAACATTTGGCACTGATCATCCAAGTTTGCT
AATAACGCAAAGAAATATCGCAGATTCTTTGGTAGACATTGAACAAAAAG
AGGAAGCCGTTGTCATTTACAAAAAGGTCGCGTCAAAACAATTGAACGTT
CTTGGTGAACAACACCCATACTTACTCATCACGAAACACAATTTAGCTGT
TTGCTTACACAAAATGGGAAGAATTGAAGAAGCTTTGGAGATATTTAGAG
AAGTGGAGCAAGTGAGAATGACAACACTTGATGAAAACCATCCATCATTG
GTGAACACCAAGAAGTTTATCGAAATGTGCTTGGAAGATTTGAGATCAAG
TAATAAAAGCGTCATGAGCACCAGTGAGCAT
Run BLAST on NCBI

protein sequence of TCONS_00009036-protein

>TCONS_00009036-protein ID=TCONS_00009036-protein|Name=TCONS_00009036-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
VEQKQLTTFGTDHPSLLITQRNIADSLVDIEQKEEAVVIYKKVASKQLNV
LGEQHPYLLITKHNLAVCLHKMGRIEEALEIFREVEQVRMTTLDENHPSL
VNTKKFIEMCLEDLRSSNKSVMSTSEH
Run BLAST on NCBI

transcript from alignment at sc0000089:424724..425378-

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00009036 ID=TCONS_00009036|Name=TCONS_00009036|organism=Clytia hemisphaerica|type=transcript|length=655bp|location=Sequence derived from alignment at sc0000089:424724..425378- (Clytia hemisphaerica)
GTGGAACAGAAGCAGTTGACAACATTTGGCACTGATCATCCAAGTTTGCT
AATAACGCAAAGAAATATCGCAGATTCTTTGGTAGACATTGAACAAAAAG
AGGAAGCCGTTGTCATTTACAAAAAGGTCGCGTCAAAACAATTGAACGTT
CTTGGTGAACAACACCCATACTTACTCATCACGAAACACAATTTAGCTGT
TTGCTTACACAAAATGGGAAGAATTGAAGAAGCTTTGGAGATATTTAGAG
AAGTGGAGCAAGTGAGAATGACAACACTTGATGAAAACCATCCATCATTG
GTGAACACCAAGAAGTTTATCGAAATGTGCTTGGAAGATTTGAGATCAAG
TAATAAAAGGTTAGTGGAGGTCTTATTCAGATTTTTATGGTAATATGTTA
TATACCAAGAAAGGTTCTGTAATGATGTCATCCATTGAATTCAAATTCAA
ATTATATGGAAAAGGATTTTTAAGCATTTTGCGCAGTTTTACTTTTCTTG
AATTAGGTTCAAATTTTCGTTTTAACGTGACGAGCCCTGCGGAAGTATGC
TCATGGCAGAATGTTCAAATGATGGACAGTCTCTGTGAAATTCGACAATC
AAATAATGAATAAAATTATCTGTTTTCTTTCAGCGTCATGAGCACCAGTG
AGCAT

Coding sequence (CDS) from alignment at sc0000089:424724..425378-

>TCONS_00009036 ID=TCONS_00009036|Name=TCONS_00009036|organism=Clytia hemisphaerica|type=CDS|length=762bp|location=Sequence derived from alignment at sc0000089:424724..425378- (Clytia hemisphaerica)
CGTCATGAGCACCAGTGAGCATGTGGAACAGAAGCAGTTGACAACATTTG
GCACTGATCATCCAAGTTTGCTAATAACGCAAAGAAATATCGCAGATTCT
TTGGTAGACATTGAACAAAAAGAGGAAGCCGTTGTCATTTACAAAAAGGT
CGCGTCAAAACAATTGAACGTTCTTGGTGAACAACACCCATACTTACTCA
TCACGAAACACAATTTAGCTGTTTGCTTACACAAAATGGGAAGAATTGAA
GAAGCTTTGGAGATATTTAGAGAAGTGGAGCAAGTGAGAATGACAACACT
TGATGAAAACCATCCATCATTGGTGAACACCAAGAAGTTTATCGAAATGT
GCTTGGAAGATTTGAGATCAAGTAATAAAAGCGTCATGAGCACCAGTGAG
CATGTGGAACAGAAGCAGTTGACAACATTTGGCACTGATCATCCAAGTTT
GCTAATAACGCAAAGAAATATCGCAGATTCTTTGGTAGACATTGAACAAA
AAGAGGAAGCCGTTGTCATTTACAAAAAGGTCGCGTCAAAACAATTGAAC
GTTCTTGGTGAACAACACCCATACTTACTCATCACGAAACACAATTTAGC
TGTTTGCTTACACAAAATGGGAAGAATTGAAGAAGCTTTGGAGATATTTA
GAGAAGTGGAGCAAGTGAGAATGACAACACTTGATGAAAACCATCCATCA
TTGGTGAACACCAAGAAGTTTATCGAAATGTGCTTGGAAGATTTGAGATC
AAGTAATAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005052XLOC_005052Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009036-proteinTCONS_00009036-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00009036-exon-sc0000089-1575043694:425020..425378TCONS_00009036-exon-sc0000089-1575043694:425020..425378Clytia hemisphaericaexon
TCONS_00009036-exon-sc0000089-1575043694:424724..424745TCONS_00009036-exon-sc0000089-1575043694:424724..424745Clytia hemisphaericaexon
TCONS_00009036-exon-sc0000089-1510915933:425020..425378TCONS_00009036-exon-sc0000089-1510915933:425020..425378Clytia hemisphaericaexon
TCONS_00009036-exon-sc0000089-1510915933:424724..424745TCONS_00009036-exon-sc0000089-1510915933:424724..424745Clytia hemisphaericaexon
TCONS_00009036-exon-sc0000089-1491911889:425020..425378TCONS_00009036-exon-sc0000089-1491911889:425020..425378Clytia hemisphaericaexon
TCONS_00009036-exon-sc0000089-1491911889:424724..424745TCONS_00009036-exon-sc0000089-1491911889:424724..424745Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000089supercontigsc0000089:424724..425378 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.219807	0.530375	1.48959	0	0.861198	0.8359	0.412116	5.00436	1.91594	1.28244	0.377078	0	0.317418	9.56187	8.654	0	0	0	0	0.664376	0.59294	0	0	0.228939	0.699758
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011991WHTH_DNA-bd_dom
IPR011990TPR-like_helical_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00009036 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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