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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00008938 ID=TCONS_00008938|Name=TCONS_00008938|organism=Clytia hemisphaerica|type=transcript|length=3050bp
AacttaatatttttaaaacttttgagtCCGTCCAGGTCTGTTTATTaatg
aacaatttttttaattaaaatttcagaggaaaagagatttgtttCAAACA
AAGAATTCGCCTTTTAGCAGATTGGAATAAGAATCaagcttcttataaaa
aagagattttataacatgtttcaaaacaaatcaacaaaaattacaaaaaa
acttcaaaaaaattttaaacattatctAGCATGCAAAATCTTCACTTTTA
GTTccttaaatttcatcattgaagGAAAGCCAAGGACAAAAGTTTGAAAG
GCCCATTTCATGATTGAGTTGAAAGGAAAACCAAGTTCAACAGATAGCTT
TATAACATACAATGATTCTAGAAAATGACCCACCAAAGTCCCTACAGCCA
CCAGTTGGAATAAGAGTAGATAATTTTTATGGCCTTTCAAGAATATATGA
CCAACCACTTCAAGATTGTCCAAGTAAACAGCAGGTTCTGGATGGAGTGC
AATAAAAAATATTGgaccaaatatcaaaaaataaatcaagtaTAAAAATA
GTGAGCACCTGTAGAACATTTTGTGAATCTTATCTAaataaattctttat
tttaatcAAATAATTTAAGTCATCTCATCAGATCACAGACATATGTAGGA
AAAAcgtaaaatttatcaatttatttctctttagaaagtttttctttGCG
ATATCTTCTCAATCTCATTAAAGATAAAACACCCAGGAACCAAGTTTGAA
AAGCCCACTTGAATACTGTTGACTTTGTCATATTCAAACTGTAAGCCATC
TTTATAATTAACAAGGTTTCAAGAATATGAATGGTAATTGAAATGAATAA
TGTGTTATACAACTGCTTGTGATAATTCAGATGCAAATTCAAAAGCAATT
TCCCAACAAACCCTAATTGACCTAAATAGATTTCAGGTTCAGGATGGTAA
ACCAAAAATGCAAGCATAGAGAAACCAATAATTATCAAAACATATTCATA
AATTGGTCCTCTATCAAAATATTTGTCAGTTTTCAttttactttgatttt
gattttctagAATAATAAGAAGAAATAATTTATAAGAAACCAGTTGCATG
GACTTTATGAAAACCAGCTATTATACCAATCTGTTGAACTGACAGAAAGT
AGAAAGTAGAAAGGCAGTAGTCTCAAATAGAATTTGGATAAACAGTGACT
ACCTTTCTTTACATTGGTGTAAAAATCTAATTGATGTTTTCCNATTTTAA
TCAAATAATTTAAGTCATCTCATCAGATCACAGACATATGTAGGAAAAAc
gtaaaatttatcaatttatttctctttagaaagtttttctttGCGATATC
TTCTCAATCTCATTAAAGATAAAACACCCAGGAACCAAGTTTGAAAAGCC
CACTTGAATACTGTTGACTTTGTCATATTCAAACTGTAAGCCATCTTTAT
AATTAACAAGGTTTCAAGAATATGAATGGTAATTGAAATGAATAATGTGT
TATACAACTGCTTGTGATAATTCAGATGCAAATTCAAAAGCAATTTCCCA
ACAAACCCTAATTGACCTAAATAGATTTCAGGTTCAGGATGGTAAACCAA
AAATGCAAGCATAGAGAAACCAATAATTATCAAAACATATTCATAAATTG
GTCCTCTATCAAAATATTTGTCAGTTTTCAttttactttgattttgattt
tctagAATAATAAGAAGAAATAATTTATAAGAAACCAGTTGCATGGACTT
TATGAAAACCAGCTATTATACCAATCTGTTGAACTGACAGAAAGTAGAAA
GTAGAAAGGCAGTAGTCTCAAATAGAATTTGGATAAACAGTGACTACCTT
TCTTTACATTGGTGTAAAAATCTAATTGATGTTTTCCAAATTACCCAGGC
TTGTTGGCTTGTATACTCGTTTACTCACTCTCTAGATTgaatagaaaaag
aaatttttccaataaaatcCTTACAtgtaaatttatgtttactaaTTTTA
TTAATATTcaatattaaaatcaaaaaaacttggTAGATAGAAGATATATC
TATGTGAGTTGGCCAACACAAAAGAATGTTGAGGACAACAAAAATGTGAA
GTTTTTTGGTGTAGCCAACAATGGTAGAGAGTGTAAAGAAGGACTGAATT
GGAATGGCGCtaaacttttatttaaaaactttttaagaaaataaatttga
taggAAAGCATTTAAAATCTGTCAGACAAATTTTGCCAGACTGCTGTGTC
TGGGAAGCATGGTCTGAATTTGGACGATTACCAGTACAGTATGTTACATC
TAGGTTTGGAAAACCAATGCTCTTGCACATCCGAGAGATGACACTACATT
GACTTTATTGATGTCAGGTAAAGTTGAGATATTGCCTTTTAACTGGCTAG
GCTTGCTCGCGATATAAGCAGACCTGAAATCGTCGGGTTTCTGTGTCGTC
CAAATTATATATACATGGTGTATAATCAAACAACTGgtgccaaattttaa
ctatggtGAAGGGGAAGGCGGTATTTATTCATATACAAACCACACCTGGG
AAGAAAATGCCACCTCAAACCAGTGAATACAACAAACAAGAACATTTGAA
AGGGGTGCCTTTCAGACACCGGTCAAAGACTATTCAATGTGTTACCAAGA
AAAATACGTCACATGaccaaatgttccaaaaattccttcaaaaaacaact
tCATCAATTTCTCCAAGATGTTCCCGACCAGCCACTGCTCCCTGCTTATC
TCCCTTACAGGATGGCTGACTGgaattcaattgttgaaatggtcaaacac
cggaccccacgggttgagtgagcagagaatttgctgaaacacGTCAAAGG
GAATCAAAGGTAAGGTAATCAAGAAGAAAGGAGCACCGTCATTCTAACAT
CCAATTTCAGTAGGCCAGGTTTTAAAAGACGCATCCACCTTGCTCTCCCT
TGACCGTCATATAACAATGTAGAGTGTAAATAGAATATAAAGCGCTTTTA
ATTCATTAATCCCTAATCCTATCAATTCCTAAAATATGGCTCATGGTCAT Run BLAST on NCBI protein sequence of TCONS_00008938-protein >TCONS_00008938-protein ID=TCONS_00008938-protein|Name=TCONS_00008938-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
MQLVSYKLFLLIILENQNQSKMKTDKYFDRGPIYEYVLIIIGFSMLAFLV
YHPEPEIYLGQLGFVGKLLLNLHLNYHKQLYNTLFISITIHILETLLIIK
MAYSLNMTKSTVFKWAFQTWFLGVLSLMRLRRYRKEKLSKEK Run BLAST on NCBI transcript from alignment at sc0000088:452843..455892 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00008938 ID=TCONS_00008938|Name=TCONS_00008938|organism=Clytia hemisphaerica|type=transcript|length=3050bp|location=Sequence derived from alignment at sc0000088:452843..455892 (Clytia hemisphaerica)
ATGACCATGAGCCATATTTTAGGAATTGATAGGATTAGGGATTAATGAAT
TAAAAGCGCTTTATATTCTATTTACACTCTACATTGTTATATGACGGTCA
AGGGAGAGCAAGGTGGATGCGTCTTTTAAAACCTGGCCTACTGAAATTGG
ATGTTAGAATGACGGTGCTCCTTTCTTCTTGATTACCTTACCTTTGATTC
CCTTTGACgtgtttcagcaaattctctgctcactcaacccgtggggtccg
gtgtttgaccatttcaacaattgaattcCAGTCAGCCATCCTGTAAGGGA
GATAAGCAGGGAGCAGTGGCTGGTCGGGAACATCTTGGAGAAATTGATGa
agttgttttttgaaggaatttttggaacatttggtCATGTGACGTATTTT
TCTTGGTAACACATTGAATAGTCTTTGACCGGTGTCTGAAAGGCACCCCT
TTCAAATGTTCTTGTTTGTTGTATTCACTGGTTTGAGGTGGCATTTTCTT
CCCAGGTGTGGTTTGTATATGAATAAATACCGCCTTCCCCTTCaccatag
ttaaaatttggcacCAGTTGTTTGATTATACACCATGTATATATAATTTG
GACGACACAGAAACCCGACGATTTCAGGTCTGCTTATATCGCGAGCAAGC
CTAGCCAGTTAAAAGGCAATATCTCAACTTTACCTGACATCAATAAAGTC
AATGTAGTGTCATCTCTCGGATGTGCAAGAGCATTGGTTTTCCAAACCTA
GATGTAACATACTGTACTGGTAATCGTCCAAATTCAGACCATGCTTCCCA
GACACAGCAGTCTGGCAAAATTTGTCTGACAGATTTTAAATGCTTTccta
tcaaatttattttcttaaaaagtttttaaataaaagtttaGCGCCATTCC
AATTCAGTCCTTCTTTACACTCTCTACCATTGTTGGCTACACCAAAAAAC
TTCACATTTTTGTTGTCCTCAACATTCTTTTGTGTTGGCCAACTCACATA
GATATATCTTCTATCTAccaagtttttttgattttaatattgAATATTAA
TAAAAttagtaaacataaatttacaTGTAAGgattttattggaaaaattt
ctttttctattcAATCTAGAGAGTGAGTAAACGAGTATACAAGCCAACAA
GCCTGGGTAATTTGGAAAACATCAATTAGATTTTTACACCAATGTAAAGA
AAGGTAGTCACTGTTTATCCAAATTCTATTTGAGACTACTGCCTTTCTAC
TTTCTACTTTCTGTCAGTTCAACAGATTGGTATAATAGCTGGTTTTCATA
AAGTCCATGCAACTGGTTTCTTATAAATTATTTCTTCTTATTATTctaga
aaatcaaaatcaaagtaaaaTGAAAACTGACAAATATTTTGATAGAGGAC
CAATTTATGAATATGTTTTGATAATTATTGGTTTCTCTATGCTTGCATTT
TTGGTTTACCATCCTGAACCTGAAATCTATTTAGGTCAATTAGGGTTTGT
TGGGAAATTGCTTTTGAATTTGCATCTGAATTATCACAAGCAGTTGTATA
ACACATTATTCATTTCAATTACCATTCATATTCTTGAAACCTTGTTAATT
ATAAAGATGGCTTACAGTTTGAATATGACAAAGTCAACAGTATTCAAGTG
GGCTTTTCAAACTTGGTTCCTGGGTGTTTTATCTTTAATGAGATTGAGAA
GATATCGCaaagaaaaactttctaaagagaaataaattgataaattttac
gTTTTTCCTACATATGTCTGTGATCTGATGAGATGACTTAAATTATTTGA
TTAAAATNGGAAAACATCAATTAGATTTTTACACCAATGTAAAGAAAGGT
AGTCACTGTTTATCCAAATTCTATTTGAGACTACTGCCTTTCTACTTTCT
ACTTTCTGTCAGTTCAACAGATTGGTATAATAGCTGGTTTTCATAAAGTC
CATGCAACTGGTTTCTTATAAATTATTTCTTCTTATTATTctagaaaatc
aaaatcaaagtaaaaTGAAAACTGACAAATATTTTGATAGAGGACCAATT
TATGAATATGTTTTGATAATTATTGGTTTCTCTATGCTTGCATTTTTGGT
TTACCATCCTGAACCTGAAATCTATTTAGGTCAATTAGGGTTTGTTGGGA
AATTGCTTTTGAATTTGCATCTGAATTATCACAAGCAGTTGTATAACACA
TTATTCATTTCAATTACCATTCATATTCTTGAAACCTTGTTAATTATAAA
GATGGCTTACAGTTTGAATATGACAAAGTCAACAGTATTCAAGTGGGCTT
TTCAAACTTGGTTCCTGGGTGTTTTATCTTTAATGAGATTGAGAAGATAT
CGCaaagaaaaactttctaaagagaaataaattgataaattttacgTTTT
TCCTACATATGTCTGTGATCTGATGAGATGACTTAAATTATTTgattaaa
ataaagaatttattTAGATAAGATTCACAAAATGTTCTACAGGTGCTCAC
TATTTTTAtacttgatttattttttgatatttggtcCAATATTTTTTATT
GCACTCCATCCAGAACCTGCTGTTTACTTGGACAATCTTGAAGTGGTTGG
TCATATATTCTTGAAAGGCCATAAAAATTATCTACTCTTATTCCAACTGG
TGGCTGTAGGGACTTTGGTGGGTCATTTTCTAGAATCATTGTATGTTATA
AAGCTATCTGTTGAACTTGGTTTTCCTTTCAACTCAATCATGAAATGGGC
CTTTCAAACTTTTGTCCTTGGCTTTCcttcaatgatgaaatttaaggAAC
TAAAAGTGAAGATTTTGCATGCTagataatgtttaaaatttttttgaagt
ttttttgtaatttttgttgatttgttttgaaacatgttataaaatctctt
ttttataagaagcttGATTCTTATTCCAATCTGCTAAAAGGCGAATTCTT
TGTTTGaaacaaatctcttttcctctgaaattttaattaaaaaaattgtt
cattAATAAACAGACCTGGACGGactcaaaagttttaaaaatattaagtT
Coding sequence (CDS) from alignment at sc0000088:452843..455892 >TCONS_00008938 ID=TCONS_00008938|Name=TCONS_00008938|organism=Clytia hemisphaerica|type=CDS|length=429bp|location=Sequence derived from alignment at sc0000088:452843..455892 (Clytia hemisphaerica)
ATGCAACTGGTTTCTTATAAATTATTTCTTCTTATTATTctagaaaatca
aaatcaaagtaaaaTGAAAACTGACAAATATTTTGATAGAGGACCAATTT
ATGAATATGTTTTGATAATTATTGGTTTCTCTATGCTTGCATTTTTGGTT
TACCATCCTGAACCTGAAATCTATTTAGGTCAATTAGGGTTTGTTGGGAA
ATTGCTTTTGAATTTGCATCTGAATTATCACAAGCAGTTGTATAACACAT
TATTCATTTCAATTACCATTCATATTCTTGAAACCTTGTTAATTATAAAG
ATGGCTTACAGTTTGAATATGACAAAGTCAACAGTATTCAAGTGGGCTTT
TCAAACTTGGTTCCTGGGTGTTTTATCTTTAATGAGATTGAGAAGATATC
GCaaagaaaaactttctaaagagaaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00008938-exon-sc0000088-1491911889:452843..455892 | TCONS_00008938-exon-sc0000088-1491911889:452843..455892 | Clytia hemisphaerica | exon |
| TCONS_00008938-exon-sc0000088-1510915933:452843..455892 | TCONS_00008938-exon-sc0000088-1510915933:452843..455892 | Clytia hemisphaerica | exon |
| TCONS_00008938-exon-sc0000088-1575043694:452843..455892 | TCONS_00008938-exon-sc0000088-1575043694:452843..455892 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000088 | supercontig | sc0000088:452843..455892 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR028110 | TMEM254 |
Blast
The following BLAST results are available for this feature:
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