TCONS_00008921 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008921
Unique NameTCONS_00008921
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length569

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008921 ID=TCONS_00008921|Name=TCONS_00008921|organism=Clytia hemisphaerica|type=transcript|length=569bp
GGACACAAATCTATATGACCCAAATCGTCAATATGCCAACTTCCTTGAAA
AATGTCTTCTGATTGTGAAAAAGCATTTGCCAAAGAGAAAacctccaaaa
aaaatttcaaagattccAAGAGATCGTCGTATTCTTATGAGAAAACGTAA
AAGACtctccaaaaaaatttcaaaaccaataaaacaaatcagAAACTAAT
TGACACTGAACTGATGCTACAGCAATCCCACAAAAATGAACGCGATAAAG
CAGAGCTGGATGCCTCACTGAAAATCAAAAGCAATCCTAAATACTTCTAC
TCCTATGCAAAAAGATTCACAAAAACTTAACCTAAAGTTGGCCCActgaa
aaatccaaccaccaACAAATTAACATCTGACTCGCAAGAGATGgcaaaca
tcttacaaaagcaATACTGTTCAGTATTTACCACTCCCAAAACAGACTAC
AGTTTTATGAATTCAAATGAGACAAAAGACTCCTCAACCCTTGAGCACAT
TACTTTCACAGAAGATGACTTCATCCAACAAATTGACACTATTCCAGCCA
ACTCGTCAGCCGGACCAGA
Run BLAST on NCBI

transcript from alignment at sc0000088:254408..254976

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008921 ID=TCONS_00008921|Name=TCONS_00008921|organism=Clytia hemisphaerica|type=transcript|length=569bp|location=Sequence derived from alignment at sc0000088:254408..254976 (Clytia hemisphaerica)
TCTGGTCCGGCTGACGAGTTGGCTGGAATAGTGTCAATTTGTTGGATGAA
GTCATCTTCTGTGAAAGTAATGTGCTCAAGGGTTGAGGAGTCTTTTGTCT
CATTTGAATTCATAAAACTGTAGTCTGTTTTGGGAGTGGTAAATACTGAA
CAGTATtgcttttgtaagatgtttgcCATCTCTTGCGAGTCAGATGTTAA
TTTGTtggtggttggatttttcagTGGGCCAACTTTAGGTTAAGTTTTTG
TGAATCTTTTTGCATAGGAGTAGAAGTATTTAGGATTGCTTTTGATTTTC
AGTGAGGCATCCAGCTCTGCTTTATCGCGTTCATTTTTGTGGGATTGCTG
TAGCATCAGTTCAGTGTCAATTAGTTTctgatttgttttattggttttga
aatttttttggagaGTCTTTTACGTTTTCTCATAAGAATACGACGATCTC
TTggaatctttgaaattttttttggaggtTTTCTCTTTGGCAAATGCTTT
TTCACAATCAGAAGACATTTTTCAAGGAAGTTGGCATATTGACGATTTGG
GTCATATAGATTTGTGTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_005000XLOC_005000Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008921-exon-sc0000088-1491911889:254408..254976TCONS_00008921-exon-sc0000088-1491911889:254408..254976Clytia hemisphaericaexon
TCONS_00008921-exon-sc0000088-1510915933:254408..254976TCONS_00008921-exon-sc0000088-1510915933:254408..254976Clytia hemisphaericaexon
TCONS_00008921-exon-sc0000088-1575043694:254408..254976TCONS_00008921-exon-sc0000088-1575043694:254408..254976Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000088supercontigsc0000088:254408..254976 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.02961	1.69513	1.31034	1.38413	0	0	0.223648	0	0.601182	0.477106	0.163524	0.451261	0.335561	0	0.16363	0.200466	0.431646	0.111968	0.563545	0.289665	0.80103	0	0	0.481316	0	0.619391	1.9028	0.585334	1.39006	0.609879
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008921 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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