TCONS_00008848 (transcript) - C. hemisphaerica

Overview
NameTCONS_00008848
Unique NameTCONS_00008848
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length730

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00008848 ID=TCONS_00008848|Name=TCONS_00008848|organism=Clytia hemisphaerica|type=transcript|length=730bp
TTTGATTTCAAAACTCCTGGTCACGAGAAGTTATAGGAGAtcggaaaaaa
tttcaactatCGCAACAATCCTATAACAATCGTACCGGGATGAAATTGGA
ATCGATAACCTAAAGAATAACCAAGAAACCAATAATAAACAATAATCACA
ATGGCTTCAATAAAGACCACGATGAAGCAACAGATATCAAACTTAGTACA
CGGTCTTATATACAAGCCTGGTATGAGCAGACTTCCATGGCCTTTTGTTG
TTGTTGCCTTCTGTACAGAGCTTGTCTTCGGCATGACAAGGGCCTCAGCG
TACACCTACCTTCCAAAGCTTATCAAGaCTTTTGGCGTATCAGAGACAAA
CACAGGAAAAACGATGGGCTATATTGGATCGTCTCTTGTTGTTGGCAGTT
TTATTGCAAGTTTTGGAGTTGGTTACTTGGCGGATCGTTTGAATAAAAAG
CATTTGCTGATGTCATCACTATTTCTTGCTGCAGTTGGTTCGCTTGCTTT
TGGTGTCACTCAATCCATTCCATTCGCAATTTTTGTTAGATTTTTCCAAG
GAATACCAGGTCTTCTGGTGGTGGCTCAATCTTTACTACTCGACCAATGT
GACACTACAAACAGGTCGGTTGCAATGGCTTTCGTTTTGGCAGCGTTTTC
AGTTGGAATGGTTTTGGGTCCTGCCATTGGAGgctttttggcTTTCCCGG
ATGATATTTTCAATGGAATATTCAAAAGtc
Run BLAST on NCBI

transcript from alignment at sc0000088:336750..344251+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00008848 ID=TCONS_00008848|Name=TCONS_00008848|organism=Clytia hemisphaerica|type=transcript|length=7502bp|location=Sequence derived from alignment at sc0000088:336750..344251+ (Clytia hemisphaerica)
TTTGATTTCAAAACTCCTGGTCACGAGAAGTTATAGGAGGTAGGTTATTA
GTCAttctttgttttatttctaTACGTTTTCGCCTTCTTTGAAGCAATTT
GATGGTGTTGTTGTTTCAACGTACGAAAATAGATATATATGAAAATGATG
ATCCAGGAGCAGCCGGCggagattttttttataaatatgtgttcttatct
tatcttctaggagatcatgaactttcaattttgtaTTCAAATgatgttct
gatttctaggaaaccttaatcgcactatttgtctccctaaacttatgact
attttatggtttgatgtgttctaaaatctaggaaaaacagtttgtcaaga
taaacttgtaagatatttgtttttctccacgaaaggtgtgttctgaaaat
ttctagggttactatAGGCAACaaggcaacaagattacatcaatATTCTC
TTGATTATACTCCTGTatccttaaaagatgtgttctgaaggtttctaggg
ttacctagacaacaagaacacgttggATGACCTtaattatacccctgtct
cgtcagaacacatcattatttctaactgattaattttcgaagatctgatc
agaacagatcaaaatttctagctgaaatatgctctcagaacacatcggaa
aaaaggcTGCTTTCTATGATTGGGTATCTAGAAATTGTTGAAATACAAAG
TAGTAGCATTACTTTTGTTAAACTGACTTTAGTTAGTGGTAGAAATTAAA
AACTGGTATAAGATTAAAATGTTTCTTGCTGAAAGATGGAATTATTTTGC
CAGCAGTTGATTTTACGGTGAGATTTTAACTCGGCCGGTCGCTTTTTAAA
AACACACTATCAagttttgttattttctcttaATTGTATCTAtttataat
atcaaaaatttgataattattttcaatctttCATCGATCTATATAAAAAA
GATAAGGTCAACATCTCTGATGATATATTTTTTAGAtcggaaaaaatttc
aactatCGCAACAATCCTATAACAATCGTACCGGGATGAAATTGGAATCG
ATAACCTAAAGAATAACCAAGAAACCAATAATAAACAATAATCACAATGG
CTTCAATAAAGACCACGATGAAGCAACAGATATCAAACTTAGTACACGGT
CTTATATACAAGCCTGGTATGAGCAGACTTCCATGGCCTTTTGTTGTTGT
TGCCTTCTGTACAGAGGTAAGGAGTTATTTTCTTCCCTTTTTCTCGCCGC
TCTTCTCACTTATTTTAAATCAATCCTGTTGTATATGACATAGGGCACAA
GCGTCTTTTGGACGTCCAATGTACGTTTGTAGGACGTCCAAAGGTCTTAA
AGCTGTCCATTGAATGTCCATAAGACGTCGTGTGCCCACAGGGAGGACAT
AGGGCTATTTTGGAAACAATACCCCTCTTTCCTTGAGCAGCTGGAAGCCC
TTAGACACTTACCGGAATTTGAGAGACCCTTGTATTTTCATCTAAATTTT
TTAGACTTTCCTTTGATCTCTGAGTACCTATTACtaagaaattagaaatt
ttcatgaacttTCACATATCCCCTTAGCTTTTCTTTGCGCTCTGCTTTTG
GACAGGCTCCTGACACGGAGTAGAAATTTATTTTAGAATAGCCAAAACAT
TTCACTGACCAAGCAAGTGTGTTTAATCCATAGATCATTTTCCATAAGCT
ATAATTTAGCaaaatgtcaagaaatgaaCTCTAGTCATTAGATTCTTTAT
GTACTCTGGATCTGTATGActctaggctgctggcatccactaacggattc
gtgctccttatagaggatgcttaataagcgatatttcctttgtccagaga
tttgccgcctttagccgatatacggctaaagacatttttagctggcgagt
gtctacaaatataacattacgtaatgtttacattttctgtgaggcaccaa
atcatagattggaaaatatatttggattttgaaaaaaaagtaggcggaag
gaagtttgcttctttttcttcctcctttcttgtttaatgtggagattttg
taaaagaaaagattagaaattaaatttattgaatttaagtgccctgattg
atgtatcttctgtgtgcaccaacaaaattttgcttcataaaactacattt
tgatgcctgaatttggacttgtatgagtgtatattttttttaccacactg
gattctttgatcactttggctccagataattgttttgtcagttctacaga
tatgttgcagattatttcaaggtattttagttatgtatatacagtacatt
ttgggggttgtattgaatatttctgacattacttctttatgattctacaa
aagggagtcttggggagtgttgttgtttcttcagctttggcattccACTT
TTcgatactgtgtggcctttgtgttTAACTTTTTCATGTACTTAGCTTCA
ATccttttgaagagattggagtgtttttgGNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTCGCta
agattctgtaaaatacatcgaattaaaaaaaaccgaatcggaaagcggtt
ggtagatcattaagcagacctatactaccagGGGTTTTGTAgaagtctgc
gattcagactagtatGACTCGAGCACATGGATAACGCaatttttttcgag
taataGGAGTTCTAGTTATTGTGACTCAACAATTTTGACGTTTCAATGGA
AGCCAAATTGTATTGTAATGTCTTGCTTTCTACATAGTGCACTTTCCTCG
CTCTCTATTTTCAGCTTGTCTTCGGCATGACAAGGGCCTCAGCGTACACC
TACCTTCCAAAGCTTATCAAGGTATTAATTTAgacttttatttcaaatta
cgTTAGACAATAAGGCTATATTGTTCAAGAAAACGAGATTTTGATACACT
TCTTCCAGTGTTTCGAAAGAAAATGGTCGGTGTTCATGATTCAAAATGAC
ATGGTTCTATTTGAAGCGCAACGTTTCGGAATATTACATgagtaaaagta
aaagaaacGCATAAACACGTCTCGTATGAATAAACGTTCCAAccttttca
tttattttagaCTTTTGGCGTATCAGAGACAAACACAGGTACAATAGTTG
ATACAAACTGCAATCTTATCATAAGGGTATCTgttatgaaaataaaagtt
atgtAGTTTTTCACTAGAcctgttgttttttcattttgtaataCCGAAAA
TCGTAATTTCGAAATGATACCGTTATGAATTTTTGATCAAGTGTTGTTAA
AATGGTGctgacaaaaaagatttttgagatcgatatgaaattttattttt
tgattaagTTTACACCATCATTaagttcccagctggcacacaacgtcaaa
aaacGTCCATtagacattcataacgtccaaacaacgttgtgtgccagctg
ggttggtACGATTTTAACAGGCCTTTCAATGGCACTCCAAGTATTTTGAG
AACACATTATTTTTGGTTACTGTGTTTTAGGAAAAACGATGGGCTATATT
GGATCGTCTCTTGTTGTTGGCAGTTTTATTGCAAGGTAAAAGCTTAAGAT
TAACTCTTCTATAAGACTGATGATTTTTCTGCCcacttttcaaagaaatt
gcttccttcaaaaataactttgaatAGATTATGATGGGCTTTGATGggct
ttttaatttatttagattttttaaagggtagattttaaatttgttcATTA
ATTTAGTTCAGTATTCACTGCagacgatttaaaaaaaaaaatgaaaagga
taTAAATCTTAAAGCTCACGATAATCTCGTCAAACTTGTCTAGATTTTTC
TGACGCACTCAATATCACAATTAATAGTAAGTTCATAAGCCAACGTTTAA
GCATATTTACATCTAAGAATGAACAGTATATAATTAAACATGAGCGAGAt
aatgtatctggaattctctacggctacagTTAAAGCGGCGAGGGAAATGG
AGAGTAAGGCAAGTTATTTCGGGTGAAAGCAAGTCCGATATTTGATGTAC
GGCATTATGttgactttgcttatacggtgttttggtgtttttcccgtaca
tagaaaacgacatgtcgcctttggtgacgacctGAACGGGCTGCCCCGCA
ACCGCAACCGTAGAATATCTTCGATACATAATCTCTCTATACTCTTAGCA
TGTACAACTTTTGGTTACCTATTAAAAACACTATATAGGGAAAAGTTTAC
TTACGCTGACATGACTCCCGCTTAGCAGCAAAACGAGTAAGCACTTCAAT
TGCAAAGAAACAACATTTCATTCAAGCAAAAGCTTTTCCTTGCAGTTTTG
GAGTTGGTTACTTGGCGGATCGTTTGAATAAAAAGCATTTGCTGATGTCA
TCACTATTTCTTGCTGCAGTTGGTTCGCTTGCTTTTGGTGTCACTCAATC
CATTCCATTCGCAATTTTTGTTAGATTTTTCCAAGGAATACCAGGTACGT
TGATTTCACCAGAAAGTTTGCTCcgtgatttttttaatattaccgagttt
atgtatgtgtgtttttcagcgacggagacggtaaggttctaatatGACTA
GATCATAACCAACTGAGGACGAgtgtaaatcagcacttttaccgtcctcg
attttgcgggtcagaactgtgggtttttccaaatcgcttcaatCACTttg
ccgtcctcaaaagtgcaaatacataaacccGCTATTGCTCGTTTGGGAAA
AACTATACTTGTgtattaattttgaatttccttATTGGTAGGTCTTCTGG
TGGTGGCTCAATCTTTACTACTCGACCAATGTGACACTACAAACAGGGTA
AATATGTAATATTTGATCCATTTTTGGCTTTGAGATATTCACATCTCGGG
GGGGAGATTAAGCAAATTAGGCacggggatgtgccgctggtcagggtcct
tttcttaggctctgaagatatctgacagggtctcaAATTTACTAATTATC
AAATTGTATATCTGAAagggtcgacttttggtaatttttgacaattttca
gggtggaaattagaaaaatttccaatttttcgtCTTTCGTCTAGATTTAG
TCATTCTAGtcaattttcagggtgaaaatgggaaaattatTTCTCTCTAA
CAGGGTCCAAAAATTACCAAATATTCATATTTGagagggtccatttttca
aactccagtagcacgtccccgtcggccgtcaaggtcagtgccccctcTGG
GGCTCACATTTCATATAGAATAAGAGCAACAAAGACACGCTTAAGAATTT
CCATCAACATTTCCAAATGGATACAGATAGAGGAACTATTTCTTGATGGT
TATCTGTCAACGTATCTCAAATACAGTACACTTTTGTATTTTAACCAAGT
CGTCTTTAGCACTTGGCAATATGACTATATCTTCCTTTCCTAAGATTGAA
TGCGTAAATGCACAATTTAATAGTATTTTGATTCTTTCGACGTGGGTTTT
ACTTGTCTActtgtaaaagaaaaaattgattgGAAATAGCCTTAAGAGAC
TCTGATGAAAAAATACAATACCACATAGTAAGACAATATTTAGATCTAGT
ATCAAATTTGGTTCTTAACGTTAGTTCGTTTGATTTTCAGTCGGTTGCAA
TGGCTTTCGTTTTGGCAGCGTTTTCAGTTGGAATGGTTTTGGGTCCTGCC
ATTGGAGGTTcgtgtttttgacttttgcttaaAGAGGTAATATAATGTGA
ATGAATGTGGACCTTTCCAAAACAAAAGCTGCTATACTTTATGTCGACGA
GGTCTATTACCCACCCCTAATgaaacagtagcgtagacaggaggggcgca
aaatttgtgtaggagagcagatttttatgacactgatTATCTATCTATAA
TACTAGGTCAGCGTGTTTCAAACACACTGTTGGCGATCGCTTATTTCCGA
CAAAATCATCGGAGAAAGAACCTTCTGTAGTACGTTCActaagaaattaa
ttttcactTTGTCCATTTATTTGTTTAGTCGTAGAAGGCAAGGTTTATTA
CTTTACACCCTGCGATGCGGATCTGTCTCTGATAAATTATGGCAAGATTA
GAGCAGCTAGACGATATTATAAGTCGAGTAAAATGGTCGAGTGAACCTTA
CCTCCTTAAAACCTAATACGATCGTTTTTTTTGTTACTAAGGCCATGCAA
TTCCAATTCAGCAAACTTATTTCACTATCAAAATCgttgtagtaaaaaac
aaaatgtttacgcatgcgttttaaaacaGCTGTGAAATTATTGTCTCGCT
TAACGAAGTAAATCAATNNGGTACATAACACATGATCAAAGCAAAAGTAA
AGCGTAGACCCTAGAGAAAAAAGTTACTTTGAGGAAGGGGATGGGATATA
gcctgaaaaaaatttaaaatctctcCTATTCAGACAAAATGTAAGGAAAC
TAATGAGTTTATAAAGGTAAGCGAGNCCAAACCTGGTCATTGCAGTCTGT
TATATTGCATTGCTGATTGGGACGTCTTTTATGTATTATCAGCCTTACTA
CAGGTATGtcaatttaaaagttttgtttttaaactgagattgatatcgtt
tgcttactcatcaattctaattcacaagctttttcacattggattgacac
agatgtgaaGCAAgagtaaaagaaaaataattttatacacTGTCTTGATA
CGAAATATGNGATAATTgttgtgtcataaaaatctgctctcccacacaaa
ttttgcgccccctaCTGGAATCTGGATTTTTATAGGATATAAAAATTACC
CCGTTTTTTTTACTCCTTTCTATTTCAATCGCGCTTCTAATTTTATTCCT
CAATTTGAAATTTACAAAGAATTTAAGTTAGTTCGACGCTTTGCTGTCGG
GATTTCTTGTACTGAGTTataaaaagtcatattttttctgttttgtttat
gtgGTTTCTTACATTATATACTTTCCTGTCAAAactctttttttcatatt
taaggctttttggcTTTCCCGGATGATATTTTCAATGGAATATTCAAAAG
tc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_004966XLOC_004966Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00008848-exon-sc0000088-1491911889:336750..336788TCONS_00008848-exon-sc0000088-1491911889:336750..336788Clytia hemisphaericaexon
TCONS_00008848-exon-sc0000088-1510915933:336750..336788TCONS_00008848-exon-sc0000088-1510915933:336750..336788Clytia hemisphaericaexon
TCONS_00008848-exon-sc0000088-1575043694:336750..336788TCONS_00008848-exon-sc0000088-1575043694:336750..336788Clytia hemisphaericaexon
TCONS_00008848-exon-sc0000088-1491911889:337735..337965TCONS_00008848-exon-sc0000088-1491911889:337735..337965Clytia hemisphaericaexon
TCONS_00008848-exon-sc0000088-1510915933:337735..337965TCONS_00008848-exon-sc0000088-1510915933:337735..337965Clytia hemisphaericaexon
TCONS_00008848-exon-sc0000088-1575043694:337735..337965TCONS_00008848-exon-sc0000088-1575043694:337735..337965Clytia hemisphaericaexon
TCONS_00008848-exon-sc0000088-1491911889:340014..340070TCONS_00008848-exon-sc0000088-1491911889:340014..340070Clytia hemisphaericaexon
TCONS_00008848-exon-sc0000088-1510915933:340014..340070TCONS_00008848-exon-sc0000088-1510915933:340014..340070Clytia hemisphaericaexon
TCONS_00008848-exon-sc0000088-1575043694:340014..340070TCONS_00008848-exon-sc0000088-1575043694:340014..340070Clytia hemisphaericaexon
TCONS_00008848-exon-sc0000088-1491911889:340310..340337TCONS_00008848-exon-sc0000088-1491911889:340310..340337Clytia hemisphaericaexon
TCONS_00008848-exon-sc0000088-1510915933:340310..340337TCONS_00008848-exon-sc0000088-1510915933:340310..340337Clytia hemisphaericaexon
TCONS_00008848-exon-sc0000088-1575043694:340310..340337TCONS_00008848-exon-sc0000088-1575043694:340310..340337Clytia hemisphaericaexon
TCONS_00008848-exon-sc0000088-1491911889:340730..340784TCONS_00008848-exon-sc0000088-1491911889:340730..340784Clytia hemisphaericaexon
TCONS_00008848-exon-sc0000088-1510915933:340730..340784TCONS_00008848-exon-sc0000088-1510915933:340730..340784Clytia hemisphaericaexon
TCONS_00008848-exon-sc0000088-1575043694:340730..340784TCONS_00008848-exon-sc0000088-1575043694:340730..340784Clytia hemisphaericaexon
TCONS_00008848-exon-sc0000088-1491911889:341545..341693TCONS_00008848-exon-sc0000088-1491911889:341545..341693Clytia hemisphaericaexon
TCONS_00008848-exon-sc0000088-1510915933:341545..341693TCONS_00008848-exon-sc0000088-1510915933:341545..341693Clytia hemisphaericaexon
TCONS_00008848-exon-sc0000088-1575043694:341545..341693TCONS_00008848-exon-sc0000088-1575043694:341545..341693Clytia hemisphaericaexon
TCONS_00008848-exon-sc0000088-1491911889:341991..342046TCONS_00008848-exon-sc0000088-1491911889:341991..342046Clytia hemisphaericaexon
TCONS_00008848-exon-sc0000088-1510915933:341991..342046TCONS_00008848-exon-sc0000088-1510915933:341991..342046Clytia hemisphaericaexon
TCONS_00008848-exon-sc0000088-1575043694:341991..342046TCONS_00008848-exon-sc0000088-1575043694:341991..342046Clytia hemisphaericaexon
TCONS_00008848-exon-sc0000088-1491911889:342840..342906TCONS_00008848-exon-sc0000088-1491911889:342840..342906Clytia hemisphaericaexon
TCONS_00008848-exon-sc0000088-1510915933:342840..342906TCONS_00008848-exon-sc0000088-1510915933:342840..342906Clytia hemisphaericaexon
TCONS_00008848-exon-sc0000088-1575043694:342840..342906TCONS_00008848-exon-sc0000088-1575043694:342840..342906Clytia hemisphaericaexon
TCONS_00008848-exon-sc0000088-1491911889:344204..344251TCONS_00008848-exon-sc0000088-1491911889:344204..344251Clytia hemisphaericaexon
TCONS_00008848-exon-sc0000088-1510915933:344204..344251TCONS_00008848-exon-sc0000088-1510915933:344204..344251Clytia hemisphaericaexon
TCONS_00008848-exon-sc0000088-1575043694:344204..344251TCONS_00008848-exon-sc0000088-1575043694:344204..344251Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000088supercontigsc0000088:336750..344251 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.49992	7.96133	5.0763	4.58125	0.367322	0	2.88907	0.314689	5.19991	4.54898	3.4764	7.39364	9.65958	5.28555	3.81384	3.40068	2.67765	1.09189	8.00537	7.74459	2.33202	0	3.85045	4.52206	0	1.48141	0.239771	0.298949	1.23462	1.6171
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00008848 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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